Clone BO08176 Report

Search the DGRC for BO08176

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:81
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptPH4alphaNE3-RA
Protein status:BO08176.pep: validated full length
Sequenced Size:1477

Clone Sequence Records

BO08176.3prime Sequence

912 bp (871 high quality bases) assembled on 2006-01-06

> BO08176.3prime
ATGGTCTAGAAAGCTTGCGTCATATTCGTGTATCCAGGCTGTCATTACCC
ATTTGGAACCATGAAAGACGGGACAAGCGGCGTGCATAGTGGTGGGCTCC
ATGTCGTGGGTGTCGCCATTAAGATTGTACCAGAACAGAACTTTTCCCCG
TTCGGCAGGTACTTTAACATTTAAACGCGGGAAGACAGTGGCACCTCCGT
AAGGAGCATCATTTAGATAAAACATAAAGGTGGCCATCCGATCACCAAAT
CCTTTAGATTCCGAGTTTCTCTTTTTGAAGAAGTCATAGTAATTAGTGTA
GGGAGCTCCAAAGCCGTATTTGATAATATTAATGGGATTTCCCTGGCGGA
TTTGTAGGCCAGTGATATCCCGCATCCTCTGAGTCAAGCTATCCAAAAGT
GGTCCACCGAGCGGTGTGCGGTAACTGCTCCTTGCCTCATTCTTATTATC
GTCAAACATTTCTGTGGGTTTCAGTAGTGGCTCCGCCAAGGTTATTAGCT
GCTGGATATCCTTATCCGGCAGGATGTCATGGTACACCACTATATGGGGC
TCCAGAGAGATCTCCTCCATTTTGAGGGGAGCCAGGATCAGGAAGGCGGA
GGTGGTGCTGTTGTAGCGACAGTGGAGTTTTGAAGGGTTCGGAGAGAACG
AGGAACGGCACAGTCTCTTGTAGCCTTCACCCAACTTGGGCGAACTGTCT
ATTGCCTCGTAAGGATTGGCCTTGAATTGGTCCAGCAAGCTAATCGAATT
GTCTGCGAGATCAGGTTGATCCAGAAGTACCTCATGGGCTTCATCTCTCC
GGTCCAATTCCACTAAACAGCGAGCCTGCAGCAGGGCCACATCCTGGCGA
TTCATTCCCAGCACCTCATAAACCCCCGGAGTACTCCTCTTTCATCCGAG
CTTTGCTGATGG

BO08176.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG31017-PA 1446 PH4alphaNE3-RA 586..1443 876..19 4290 100 Minus
CG31017-PA 1446 PH4alphaNE3-RA 551..589 912..874 195 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:07:48
Subject Length Description Subject Range Query Range Score Percent Strand
PH4alphaNE3-RA 1627 CG31017-RA 558..1450 912..19 4445 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30605076..30605663 804..217 2940 100 Minus
3R 32079331 3R 30605704..30605884 228..48 875 98.9 Minus
3R 32079331 3R 30604913..30605020 912..804 495 99.1 Minus
Blast to na_te.dros performed on 2015-02-11 22:07:46 has no hits.

BO08176.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:16 Download gff for BO08176.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31017-PA 551..1446 18..912 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:31:34 Download gff for BO08176.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31017-PA 551..1446 18..912 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:47:38 Download gff for BO08176.3prime
Subject Subject Range Query Range Percent Splice Strand
PH4alphaNE3-RA 558..1457 10..912 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:44:13 Download gff for BO08176.3prime
Subject Subject Range Query Range Percent Splice Strand
PH4alphaNE3-RA 558..1457 10..912 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:44:13 Download gff for BO08176.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30604913..30605020 804..912 99 -> Minus
3R 30605077..30605663 217..803 100 -> Minus
3R 30605716..30605884 48..216 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:47:38 Download gff for BO08176.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26430635..26430742 804..912 99 -> Minus
arm_3R 26430799..26431385 217..803 100 -> Minus
arm_3R 26431438..26431606 48..216 100 -> Minus

BO08176.5prime Sequence

862 bp (845 high quality bases) assembled on 2006-01-06

> BO08176.5prime
GAAGTTATCAGTCGACATGTTTTGCAAAGTTGAAAGCACATTGAATTGGG
AGAGCCGTCAGGAATTTCTAGATACGGAATCAGCGAAAATGGACTTAATG
CAATTGGACGTCGAATTAATTGATAATCTAATGAATTACGCCGAAAAAAT
AGATGAGAAGGCTTCCCAACTAAAGAGACTAGCCCAGGAACTAAGACAGC
CTTTGCACTCTGCGAAAGGTAGAGAAGAGGAGTACTTGGGCAATCCTCTC
CACAGTTTTCCACTCATTCGACACATGTACCAGGATTGGCGGTACCTGGA
AGAGTTTATGAAGAAACCAGTGGGAGAAGAGGAAATCCAATTTCTAAGAA
GAAAGTTACCGGAACTGCCCTGGCAGGTGGACACCGAGGAAGCCAGCGTC
TCAATCTTCAGAATAGCTGAAACCTATGGAATGATGCCCTGGGATATGGC
CAACGGTCTCATCGACAATGTTCGGTTCAACTCCACACTGCCAGCTCTGG
ATTGTTTTGAAGTCGCAAAGATGTACTTCAAGTGGGGCTACTTCAAGCAG
GCATTACAGTGGATAACCATCAGCAAAGCTCGGATGAAAGAGGAGTACTC
CGGGGTTTATGAGGTGCTGGGAATGAATCGCCAGGATGTGGCCCTGCTGC
AGGCTCGCTGTTTAGTGGAATTGGACCGGAGAGATGAAGCCCATGAGGTA
CTTCTGGATCAACCTGATCTCGCAGACAATTCGATTAGCTTGCTGGACCA
ATTCAAGGCCAATCCTTACGAGGCAATAGACAGTTCGCCCAAGTTGGGTG
AAGGCTACAAGAGACTGTGCCGTTCCTCGTTCTCTCCGAACCCTTCAAAA
CTCCACTGTCGC

BO08176.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG31017-PA 1446 PH4alphaNE3-RA 1..846 17..862 4230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:34:03
Subject Length Description Subject Range Query Range Score Percent Strand
PH4alphaNE3-RA 1627 CG31017-RA 8..853 17..862 4230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:33:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30604827..30605020 481..674 970 100 Plus
3R 32079331 3R 30605076..30605264 674..862 945 100 Plus
3R 32079331 3R 30604188..30604348 17..177 805 100 Plus
3R 32079331 3R 30604405..30604558 176..329 770 100 Plus
3R 32079331 3R 30604615..30604767 328..480 765 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:33:59 has no hits.

BO08176.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:17 Download gff for BO08176.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31017-PA 1..846 17..862 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:31:36 Download gff for BO08176.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31017-PA 1..846 17..862 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:33:32 Download gff for BO08176.5prime
Subject Subject Range Query Range Percent Splice Strand
PH4alphaNE3-RA 8..853 17..862 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:46:58 Download gff for BO08176.5prime
Subject Subject Range Query Range Percent Splice Strand
PH4alphaNE3-RA 8..853 17..862 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:46:58 Download gff for BO08176.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30605077..30605264 675..862 100   Plus
3R 30604188..30604348 17..177 100 -> Plus
3R 30604407..30604558 178..329 100 -> Plus
3R 30604617..30604767 330..480 100 -> Plus
3R 30604827..30605020 481..674 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:33:32 Download gff for BO08176.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26429910..26430070 17..177 100 -> Plus
arm_3R 26430129..26430280 178..329 100 -> Plus
arm_3R 26430339..26430489 330..480 100 -> Plus
arm_3R 26430549..26430742 481..674 100 -> Plus
arm_3R 26430799..26430986 675..862 100   Plus

BO08176.complete Sequence

1477 bp assembled on 2007-10-17

GenBank Submission: FJ631089

> BO08176.complete
GAAGTTATCAGTCGACATGTTTTGCAAAGTTGAAAGCACATTGAATTGGG
AGAGCCGTCAGGAATTTCTAGATACGGAATCAGCGAAAATGGACTTAATG
CAATTGGACGTCGAATTAATTGATAATCTAATGAATTACGCCGAAAAAAT
AGATGAGAAGGCTTCCCAACTAAAGAGACTAGCCCAGGAACTAAGACAGC
CTTTGCACTCTGCGAAAGGTAGAGAAGAGGAGTACTTGGGCAATCCTCTC
CACAGTTTTCCACTCATTCGACACATGTACCAGGATTGGCGGTACCTGGA
AGAGTTTATGAAGAAACCAGTGGGAGAAGAGGAAATCCAATTTCTAAGAA
GAAAGTTACCGGAACTGCCCTGGCAGGTGGACACCGAGGAAGCCAGCGTC
TCAATCTTCAGAATAGCTGAAACCTATGGAATGATGCCCTGGGATATGGC
CAACGGTCTCATCGACAATGTTCGGTTCAACTCCACACTGCCAGCTCTGG
ATTGTTTTGAAGTCGCAAAGATGTACTTCAAGTGGGGCTACTTCAAGCAG
GCATTACAGTGGATAACCATCAGCAAAGCTCGGATGAAAGAGGAGTACTC
CGGGGTTTATGAGGTGCTGGGAATGAATCGCCAGGATGTGGCCCTGCTGC
AGGCTCGCTGTTTAGTGGAATTGGACCGGAGAGATGAAGCCCATGAGGTA
CTTCTGGATCAACCTGATCTCGCAGACAATTCGATTAGCTTGCTGGACCA
ATTCAAGGCCAATCCTTACGAGGCAATAGACAGTTCGCCCAAGTTGGGTG
AAGGCTACAAGAGACTGTGCCGTTCCTCGTTCTCTCCGAACCCTTCAAAA
CTCCACTGTCGCTACAACAGCACCACCTCCGCCTTCCTGATCCTGGCTCC
CCTCAAAATGGAGGAGATCTCTCTGGAGCCCCATATAGTGGTGTACCATG
ACATCCTGCCGGATAAGGATATCCAGCAGCTAATAACCTTGGCGGAGCCA
CTACTGAAACCCACAGAAATGTTTGACGATAATAAGAATGAGGCAAGGAG
CAGTTACCGCACACCGCTCGGTGGACCACTTTTGGATAGCTTGACTCAGA
GGATGCGGGATATCACTGGCCTACAAATCCGCCAGGGAAATCCCATTAAT
ATTATCAAATACGGCTTTGGAGCTCCCTACACTAATTACTATGACTTCTT
CAAAAAGAGAAACTCGGAATCTAAAGGATTTGGTGATCGGATGGCCACCT
TTATGTTTTATCTAAATGATGCTCCTTACGGAGGTGCCACTGTCTTCCCG
CGTTTAAATGTTAAAGTACCTGCCGAACGGGGAAAAGTTCTGTTCTGGTA
CAATCTTAATGGCGACACCCACGACATGGAGCCCACCACTATGCACGCCG
CTTGTCCCGTCTTTCATGGTTCCAAATGGGTAATGACAGCCTGGATACAC
GAATATGACGCAAGCTTTCTAGACCAT

BO08176.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
PH4alphaNE3-RA 1446 CG31017-PA 1..1443 17..1459 7215 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:23:12
Subject Length Description Subject Range Query Range Score Percent Strand
PH4alphaNE3-RA 1627 CG31017-RA 8..1450 17..1459 7215 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30605076..30605663 674..1261 2940 100 Plus
3R 32079331 3R 30604827..30605020 481..674 970 100 Plus
3R 32079331 3R 30605704..30605884 1250..1430 875 98.9 Plus
3R 32079331 3R 30604188..30604348 17..177 805 100 Plus
3R 32079331 3R 30604405..30604558 176..329 770 100 Plus
3R 32079331 3R 30604615..30604767 328..480 765 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:23:09 has no hits.

BO08176.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:28 Download gff for BO08176.complete
Subject Subject Range Query Range Percent Splice Strand
PH4alphaNE3-RA 1..1446 17..1460 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:05:44 Download gff for BO08176.complete
Subject Subject Range Query Range Percent Splice Strand
PH4alphaNE3-RA 8..1457 17..1468 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:13:42 Download gff for BO08176.complete
Subject Subject Range Query Range Percent Splice Strand
PH4alphaNE3-RA 15..1450 24..1461 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:38:21 Download gff for BO08176.complete
Subject Subject Range Query Range Percent Splice Strand
PH4alphaNE3-RA 15..1450 24..1461 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:09:34 Download gff for BO08176.complete
Subject Subject Range Query Range Percent Splice Strand
PH4alphaNE3-RA 15..1450 24..1461 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:09:34 Download gff for BO08176.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30604195..30604348 24..177 100 -> Plus
3R 30604407..30604558 178..329 100 -> Plus
3R 30604617..30604767 330..480 100 -> Plus
3R 30604827..30605020 481..674 100 -> Plus
3R 30605077..30605663 675..1261 100 -> Plus
3R 30605716..30605884 1262..1430 100 -> Plus
3R 30605939..30605967 1431..1461 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:13:42 Download gff for BO08176.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26429917..26430070 24..177 100 -> Plus
arm_3R 26430129..26430280 178..329 100 -> Plus
arm_3R 26430339..26430489 330..480 100 -> Plus
arm_3R 26430549..26430742 481..674 100 -> Plus
arm_3R 26430799..26431385 675..1261 100 -> Plus
arm_3R 26431438..26431606 1262..1430 100 -> Plus
arm_3R 26431661..26431689 1431..1461 93   Plus

BO08176.pep Sequence

Translation from 16 to 1477

> BO08176.pep
MFCKVESTLNWESRQEFLDTESAKMDLMQLDVELIDNLMNYAEKIDEKAS
QLKRLAQELRQPLHSAKGREEEYLGNPLHSFPLIRHMYQDWRYLEEFMKK
PVGEEEIQFLRRKLPELPWQVDTEEASVSIFRIAETYGMMPWDMANGLID
NVRFNSTLPALDCFEVAKMYFKWGYFKQALQWITISKARMKEEYSGVYEV
LGMNRQDVALLQARCLVELDRRDEAHEVLLDQPDLADNSISLLDQFKANP
YEAIDSSPKLGEGYKRLCRSSFSPNPSKLHCRYNSTTSAFLILAPLKMEE
ISLEPHIVVYHDILPDKDIQQLITLAEPLLKPTEMFDDNKNEARSSYRTP
LGGPLLDSLTQRMRDITGLQIRQGNPINIIKYGFGAPYTNYYDFFKKRNS
ESKGFGDRMATFMFYLNDAPYGGATVFPRLNVKVPAERGKVLFWYNLNGD
THDMEPTTMHAACPVFHGSKWVMTAWIHEYDASFLDH

BO08176.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:44:15
Subject Length Description Subject Range Query Range Score Percent Strand
PH4alphaNE3-PA 481 CG31017-PA 1..481 1..481 2560 100 Plus
CG31016-PC 536 CG31016-PC 22..516 11..485 914 37.6 Plus
CG31016-PB 536 CG31016-PB 22..516 11..485 914 37.6 Plus
PH4alphaPV-PA 525 CG31015-PA 42..516 27..484 717 34.9 Plus
CG18233-PB 515 CG18233-PB 27..498 13..478 621 30.6 Plus