Clone Sequence Records
BO08176.3prime Sequence
912 bp (871 high quality bases) assembled on 2006-01-06
> BO08176.3prime
ATGGTCTAGAAAGCTTGCGTCATATTCGTGTATCCAGGCTGTCATTACCC
ATTTGGAACCATGAAAGACGGGACAAGCGGCGTGCATAGTGGTGGGCTCC
ATGTCGTGGGTGTCGCCATTAAGATTGTACCAGAACAGAACTTTTCCCCG
TTCGGCAGGTACTTTAACATTTAAACGCGGGAAGACAGTGGCACCTCCGT
AAGGAGCATCATTTAGATAAAACATAAAGGTGGCCATCCGATCACCAAAT
CCTTTAGATTCCGAGTTTCTCTTTTTGAAGAAGTCATAGTAATTAGTGTA
GGGAGCTCCAAAGCCGTATTTGATAATATTAATGGGATTTCCCTGGCGGA
TTTGTAGGCCAGTGATATCCCGCATCCTCTGAGTCAAGCTATCCAAAAGT
GGTCCACCGAGCGGTGTGCGGTAACTGCTCCTTGCCTCATTCTTATTATC
GTCAAACATTTCTGTGGGTTTCAGTAGTGGCTCCGCCAAGGTTATTAGCT
GCTGGATATCCTTATCCGGCAGGATGTCATGGTACACCACTATATGGGGC
TCCAGAGAGATCTCCTCCATTTTGAGGGGAGCCAGGATCAGGAAGGCGGA
GGTGGTGCTGTTGTAGCGACAGTGGAGTTTTGAAGGGTTCGGAGAGAACG
AGGAACGGCACAGTCTCTTGTAGCCTTCACCCAACTTGGGCGAACTGTCT
ATTGCCTCGTAAGGATTGGCCTTGAATTGGTCCAGCAAGCTAATCGAATT
GTCTGCGAGATCAGGTTGATCCAGAAGTACCTCATGGGCTTCATCTCTCC
GGTCCAATTCCACTAAACAGCGAGCCTGCAGCAGGGCCACATCCTGGCGA
TTCATTCCCAGCACCTCATAAACCCCCGGAGTACTCCTCTTTCATCCGAG
CTTTGCTGATGG
BO08176.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31017-PA | 1446 | PH4alphaNE3-RA | 586..1443 | 876..19 | 4290 | 100 | Minus |
CG31017-PA | 1446 | PH4alphaNE3-RA | 551..589 | 912..874 | 195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:07:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PH4alphaNE3-RA | 1627 | CG31017-RA | 558..1450 | 912..19 | 4445 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:07:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30605076..30605663 | 804..217 | 2940 | 100 | Minus |
3R | 32079331 | 3R | 30605704..30605884 | 228..48 | 875 | 98.9 | Minus |
3R | 32079331 | 3R | 30604913..30605020 | 912..804 | 495 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:07:46 has no hits.
BO08176.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:16 Download gff for
BO08176.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31017-PA | 551..1446 | 18..912 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:31:34 Download gff for
BO08176.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31017-PA | 551..1446 | 18..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:47:38 Download gff for
BO08176.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaNE3-RA | 558..1457 | 10..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:44:13 Download gff for
BO08176.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaNE3-RA | 558..1457 | 10..912 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:44:13 Download gff for
BO08176.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30604913..30605020 | 804..912 | 99 | -> | Minus |
3R | 30605077..30605663 | 217..803 | 100 | -> | Minus |
3R | 30605716..30605884 | 48..216 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:47:38 Download gff for
BO08176.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26430635..26430742 | 804..912 | 99 | -> | Minus |
arm_3R | 26430799..26431385 | 217..803 | 100 | -> | Minus |
arm_3R | 26431438..26431606 | 48..216 | 100 | -> | Minus |
BO08176.5prime Sequence
862 bp (845 high quality bases) assembled on 2006-01-06
> BO08176.5prime
GAAGTTATCAGTCGACATGTTTTGCAAAGTTGAAAGCACATTGAATTGGG
AGAGCCGTCAGGAATTTCTAGATACGGAATCAGCGAAAATGGACTTAATG
CAATTGGACGTCGAATTAATTGATAATCTAATGAATTACGCCGAAAAAAT
AGATGAGAAGGCTTCCCAACTAAAGAGACTAGCCCAGGAACTAAGACAGC
CTTTGCACTCTGCGAAAGGTAGAGAAGAGGAGTACTTGGGCAATCCTCTC
CACAGTTTTCCACTCATTCGACACATGTACCAGGATTGGCGGTACCTGGA
AGAGTTTATGAAGAAACCAGTGGGAGAAGAGGAAATCCAATTTCTAAGAA
GAAAGTTACCGGAACTGCCCTGGCAGGTGGACACCGAGGAAGCCAGCGTC
TCAATCTTCAGAATAGCTGAAACCTATGGAATGATGCCCTGGGATATGGC
CAACGGTCTCATCGACAATGTTCGGTTCAACTCCACACTGCCAGCTCTGG
ATTGTTTTGAAGTCGCAAAGATGTACTTCAAGTGGGGCTACTTCAAGCAG
GCATTACAGTGGATAACCATCAGCAAAGCTCGGATGAAAGAGGAGTACTC
CGGGGTTTATGAGGTGCTGGGAATGAATCGCCAGGATGTGGCCCTGCTGC
AGGCTCGCTGTTTAGTGGAATTGGACCGGAGAGATGAAGCCCATGAGGTA
CTTCTGGATCAACCTGATCTCGCAGACAATTCGATTAGCTTGCTGGACCA
ATTCAAGGCCAATCCTTACGAGGCAATAGACAGTTCGCCCAAGTTGGGTG
AAGGCTACAAGAGACTGTGCCGTTCCTCGTTCTCTCCGAACCCTTCAAAA
CTCCACTGTCGC
BO08176.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31017-PA | 1446 | PH4alphaNE3-RA | 1..846 | 17..862 | 4230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:34:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PH4alphaNE3-RA | 1627 | CG31017-RA | 8..853 | 17..862 | 4230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:33:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30604827..30605020 | 481..674 | 970 | 100 | Plus |
3R | 32079331 | 3R | 30605076..30605264 | 674..862 | 945 | 100 | Plus |
3R | 32079331 | 3R | 30604188..30604348 | 17..177 | 805 | 100 | Plus |
3R | 32079331 | 3R | 30604405..30604558 | 176..329 | 770 | 100 | Plus |
3R | 32079331 | 3R | 30604615..30604767 | 328..480 | 765 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:33:59 has no hits.
BO08176.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:17 Download gff for
BO08176.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31017-PA | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:31:36 Download gff for
BO08176.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31017-PA | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:33:32 Download gff for
BO08176.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaNE3-RA | 8..853 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:46:58 Download gff for
BO08176.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaNE3-RA | 8..853 | 17..862 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:46:58 Download gff for
BO08176.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30605077..30605264 | 675..862 | 100 | | Plus |
3R | 30604188..30604348 | 17..177 | 100 | -> | Plus |
3R | 30604407..30604558 | 178..329 | 100 | -> | Plus |
3R | 30604617..30604767 | 330..480 | 100 | -> | Plus |
3R | 30604827..30605020 | 481..674 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:33:32 Download gff for
BO08176.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26429910..26430070 | 17..177 | 100 | -> | Plus |
arm_3R | 26430129..26430280 | 178..329 | 100 | -> | Plus |
arm_3R | 26430339..26430489 | 330..480 | 100 | -> | Plus |
arm_3R | 26430549..26430742 | 481..674 | 100 | -> | Plus |
arm_3R | 26430799..26430986 | 675..862 | 100 | | Plus |
BO08176.complete Sequence
1477 bp assembled on 2007-10-17
GenBank Submission: FJ631089
> BO08176.complete
GAAGTTATCAGTCGACATGTTTTGCAAAGTTGAAAGCACATTGAATTGGG
AGAGCCGTCAGGAATTTCTAGATACGGAATCAGCGAAAATGGACTTAATG
CAATTGGACGTCGAATTAATTGATAATCTAATGAATTACGCCGAAAAAAT
AGATGAGAAGGCTTCCCAACTAAAGAGACTAGCCCAGGAACTAAGACAGC
CTTTGCACTCTGCGAAAGGTAGAGAAGAGGAGTACTTGGGCAATCCTCTC
CACAGTTTTCCACTCATTCGACACATGTACCAGGATTGGCGGTACCTGGA
AGAGTTTATGAAGAAACCAGTGGGAGAAGAGGAAATCCAATTTCTAAGAA
GAAAGTTACCGGAACTGCCCTGGCAGGTGGACACCGAGGAAGCCAGCGTC
TCAATCTTCAGAATAGCTGAAACCTATGGAATGATGCCCTGGGATATGGC
CAACGGTCTCATCGACAATGTTCGGTTCAACTCCACACTGCCAGCTCTGG
ATTGTTTTGAAGTCGCAAAGATGTACTTCAAGTGGGGCTACTTCAAGCAG
GCATTACAGTGGATAACCATCAGCAAAGCTCGGATGAAAGAGGAGTACTC
CGGGGTTTATGAGGTGCTGGGAATGAATCGCCAGGATGTGGCCCTGCTGC
AGGCTCGCTGTTTAGTGGAATTGGACCGGAGAGATGAAGCCCATGAGGTA
CTTCTGGATCAACCTGATCTCGCAGACAATTCGATTAGCTTGCTGGACCA
ATTCAAGGCCAATCCTTACGAGGCAATAGACAGTTCGCCCAAGTTGGGTG
AAGGCTACAAGAGACTGTGCCGTTCCTCGTTCTCTCCGAACCCTTCAAAA
CTCCACTGTCGCTACAACAGCACCACCTCCGCCTTCCTGATCCTGGCTCC
CCTCAAAATGGAGGAGATCTCTCTGGAGCCCCATATAGTGGTGTACCATG
ACATCCTGCCGGATAAGGATATCCAGCAGCTAATAACCTTGGCGGAGCCA
CTACTGAAACCCACAGAAATGTTTGACGATAATAAGAATGAGGCAAGGAG
CAGTTACCGCACACCGCTCGGTGGACCACTTTTGGATAGCTTGACTCAGA
GGATGCGGGATATCACTGGCCTACAAATCCGCCAGGGAAATCCCATTAAT
ATTATCAAATACGGCTTTGGAGCTCCCTACACTAATTACTATGACTTCTT
CAAAAAGAGAAACTCGGAATCTAAAGGATTTGGTGATCGGATGGCCACCT
TTATGTTTTATCTAAATGATGCTCCTTACGGAGGTGCCACTGTCTTCCCG
CGTTTAAATGTTAAAGTACCTGCCGAACGGGGAAAAGTTCTGTTCTGGTA
CAATCTTAATGGCGACACCCACGACATGGAGCCCACCACTATGCACGCCG
CTTGTCCCGTCTTTCATGGTTCCAAATGGGTAATGACAGCCTGGATACAC
GAATATGACGCAAGCTTTCTAGACCAT
BO08176.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:23:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PH4alphaNE3-RA | 1446 | CG31017-PA | 1..1443 | 17..1459 | 7215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:23:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PH4alphaNE3-RA | 1627 | CG31017-RA | 8..1450 | 17..1459 | 7215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:23:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30605076..30605663 | 674..1261 | 2940 | 100 | Plus |
3R | 32079331 | 3R | 30604827..30605020 | 481..674 | 970 | 100 | Plus |
3R | 32079331 | 3R | 30605704..30605884 | 1250..1430 | 875 | 98.9 | Plus |
3R | 32079331 | 3R | 30604188..30604348 | 17..177 | 805 | 100 | Plus |
3R | 32079331 | 3R | 30604405..30604558 | 176..329 | 770 | 100 | Plus |
3R | 32079331 | 3R | 30604615..30604767 | 328..480 | 765 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:23:09 has no hits.
BO08176.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:28 Download gff for
BO08176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaNE3-RA | 1..1446 | 17..1460 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:05:44 Download gff for
BO08176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaNE3-RA | 8..1457 | 17..1468 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:13:42 Download gff for
BO08176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaNE3-RA | 15..1450 | 24..1461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:38:21 Download gff for
BO08176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaNE3-RA | 15..1450 | 24..1461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:09:34 Download gff for
BO08176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaNE3-RA | 15..1450 | 24..1461 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:09:34 Download gff for
BO08176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30604195..30604348 | 24..177 | 100 | -> | Plus |
3R | 30604407..30604558 | 178..329 | 100 | -> | Plus |
3R | 30604617..30604767 | 330..480 | 100 | -> | Plus |
3R | 30604827..30605020 | 481..674 | 100 | -> | Plus |
3R | 30605077..30605663 | 675..1261 | 100 | -> | Plus |
3R | 30605716..30605884 | 1262..1430 | 100 | -> | Plus |
3R | 30605939..30605967 | 1431..1461 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:13:42 Download gff for
BO08176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26429917..26430070 | 24..177 | 100 | -> | Plus |
arm_3R | 26430129..26430280 | 178..329 | 100 | -> | Plus |
arm_3R | 26430339..26430489 | 330..480 | 100 | -> | Plus |
arm_3R | 26430549..26430742 | 481..674 | 100 | -> | Plus |
arm_3R | 26430799..26431385 | 675..1261 | 100 | -> | Plus |
arm_3R | 26431438..26431606 | 1262..1430 | 100 | -> | Plus |
arm_3R | 26431661..26431689 | 1431..1461 | 93 | | Plus |
BO08176.pep Sequence
Translation from 16 to 1477
> BO08176.pep
MFCKVESTLNWESRQEFLDTESAKMDLMQLDVELIDNLMNYAEKIDEKAS
QLKRLAQELRQPLHSAKGREEEYLGNPLHSFPLIRHMYQDWRYLEEFMKK
PVGEEEIQFLRRKLPELPWQVDTEEASVSIFRIAETYGMMPWDMANGLID
NVRFNSTLPALDCFEVAKMYFKWGYFKQALQWITISKARMKEEYSGVYEV
LGMNRQDVALLQARCLVELDRRDEAHEVLLDQPDLADNSISLLDQFKANP
YEAIDSSPKLGEGYKRLCRSSFSPNPSKLHCRYNSTTSAFLILAPLKMEE
ISLEPHIVVYHDILPDKDIQQLITLAEPLLKPTEMFDDNKNEARSSYRTP
LGGPLLDSLTQRMRDITGLQIRQGNPINIIKYGFGAPYTNYYDFFKKRNS
ESKGFGDRMATFMFYLNDAPYGGATVFPRLNVKVPAERGKVLFWYNLNGD
THDMEPTTMHAACPVFHGSKWVMTAWIHEYDASFLDH
BO08176.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:44:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PH4alphaNE3-PA | 481 | CG31017-PA | 1..481 | 1..481 | 2560 | 100 | Plus |
CG31016-PC | 536 | CG31016-PC | 22..516 | 11..485 | 914 | 37.6 | Plus |
CG31016-PB | 536 | CG31016-PB | 22..516 | 11..485 | 914 | 37.6 | Plus |
PH4alphaPV-PA | 525 | CG31015-PA | 42..516 | 27..484 | 717 | 34.9 | Plus |
CG18233-PB | 515 | CG18233-PB | 27..498 | 13..478 | 621 | 30.6 | Plus |