Clone Sequence Records
BO08177.3prime Sequence
926 bp (841 high quality bases) assembled on 2006-01-06
> BO08177.3prime
ATGGTCTAGGAAAGCTTGCCGTCTGGCTCTTGTCATCACTTTTGACACCC
TTTCCTCCGGACAGCAGGTCCTGGATTTCGATTATTGTCTTGCCCTTGGT
CTCCGGCACGAAGAACAGAGAGTAGAAGAAGGCGATGACCGCGATCGCGG
TAAAGATCCAAAAGGTCGGACCCGGCCCGATCGAGCTCTTGAGGATTGGG
AAGAGCAGCGTGACCACGAAGGCCGACAGCCAGTTGCTGGTGCCGGCAAT
CGATCCTGCCACACTCTTCACATCCTCCGAGAAGAGTTCCGCCATCACCA
GCCACGGCACCGGTCCGAATCCAATCGAGAAGAAGATTATGAAAATGCAG
ATACTGCTGATCGGCAACCAACCGAAATTGTCCATTGAAGCCGGATCGTT
CTCCTTTAGCTGAAAGTACACGCCCATCAGTGCAGTGGACACGGCCATCA
GAACGCCAGAGATAAGGAGCAGGATGCGACGGCCAGCCTTGTCGATAATG
GCCACGGCAACCAGCGTGCTGGTCACTTGGGTGACTCCAATGATAAGCGT
GGCATCGCTGCCACTTATGTCAGAGCCCGTATCCTCGAAAATGGAGGCGG
AGTAGAAGAGAACGGCGTTGATTCCCGTCCACTGCTGGAAGACCTGCAGG
AGCACAGCGATTCCAAGACCCTTCAGGACGATGGGTCGACGAAGGGAGGA
CAGAATGTTGACCTGTGGCATATCAATCTGCTTCTGGGACTCCTCCAGGA
TCTCCTTGAGCTCGTCATCGATATCGGCATCCTTGCCGCGCAGCCACTGC
AAGGCCTTGGCGGCATCATCGTTGCGTCCCTTCATGGCCAGGTAGACGGG
TGACTCCGGCATGAGAAAGTGTATGATAGCAAAGATTACGGGCAGAATAG
CGCACAGGATATTGATGGTGAGCAGG
BO08177.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6484-PA | 1398 | CG6484-RA | 489..1395 | 926..20 | 4485 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:06:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6484-RA | 1590 | CG6484-RA | 558..1464 | 926..20 | 4505 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:06:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17582133..17582828 | 20..715 | 3480 | 100 | Plus |
| 2R | 25286936 | 2R | 17583240..17583455 | 711..926 | 1050 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:06:33 has no hits.
BO08177.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:17 Download gff for
BO08177.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6484-PA | 489..1398 | 17..926 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:31:38 Download gff for
BO08177.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6484-PA | 489..1398 | 17..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:11:00 Download gff for
BO08177.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6484-RA | 558..1464 | 20..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:24:21 Download gff for
BO08177.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6484-RA | 558..1464 | 20..926 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:24:21 Download gff for
BO08177.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17582133..17582825 | 20..712 | 100 | <- | Plus |
| 2R | 17583242..17583455 | 713..926 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:11:00 Download gff for
BO08177.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13469638..13470330 | 20..712 | 100 | <- | Plus |
| arm_2R | 13470747..13470960 | 713..926 | 99 | | Plus |
BO08177.5prime Sequence
802 bp (799 high quality bases) assembled on 2006-01-06
> BO08177.5prime
GAAGTTATCAGTCGACATGTCCAAGGGATCGGTGTTGCCACAATATATTG
CTGGCTTGTCGGCCAGCTTTGGTGCCCTCTGCATGGGCGCCTCCATTGGT
TGGTCCTCGCCCGTGGAGAATATGATAACGGTGAACACGGAATACGGCTT
TCCCATTAGCTCCAGTCAGTTCGGCTGGGTATCCTCGCTGCTGACCCTGG
GCGCCACTGTGATCTGCATTCCCATTGGTTTCGCCATCGATTGGATCGGC
AGGAGACCCACTATGTTAGCCCTAATTCCACCGTACATGGTGGGCTGGGT
GCTGATGCTGTTCGCCAAAAACGTGACCATGCTCTACTTCGGACGATTCA
TTCTTGGCATGTGCGGCGGAGCCTTTTGCGTAACAGCTCCCATGTACTGT
ACAGAGATTACGGCGACAGCACTACGAGGCACCATCGGATCCTTTTTCCA
GCTGCTGATTGTGTCGGGCGTGCTGTACGGCTATTTGGTGGGCGCCTTCC
TGCCCCTGCTCACCATCAATATCCTGTGCGCTATTCTGCCCGTAATCTTT
GCTATCATACACTTCTTCATGCCGGAGTCACCCGTCTACCTGGCCATGAA
GGGACGCAACGATGATGCCGCCAAGGCCTTGCAGTGGCTGCGCGGCAAGG
ATGCCGATATCGATGACGAGCTCAAGGAGATCCTGGAGGAGTCCCAGAAG
CAGATTGATATGCCACAGGTCAACATTCTGTCCTCCCTTCGTCGACCCAT
CGTCCTGAAGGGTCTTGGAATCGCTGTGCTCCTGCAGGTCTTCCAGCAGT
GG
BO08177.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6484-PA | 1398 | CG6484-RA | 1..786 | 17..802 | 3930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:01:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6484-RA | 1590 | CG6484-RA | 65..855 | 12..802 | 3940 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:01:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17583240..17583948 | 720..12 | 3530 | 99.9 | Minus |
| 2R | 25286936 | 2R | 17582742..17582828 | 802..716 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:01:42 has no hits.
BO08177.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:18 Download gff for
BO08177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6484-PA | 1..786 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:31:39 Download gff for
BO08177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6484-PA | 1..786 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:46:10 Download gff for
BO08177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6484-RA | 65..855 | 12..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:37:18 Download gff for
BO08177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6484-RA | 65..855 | 12..802 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:37:18 Download gff for
BO08177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17582742..17582825 | 719..802 | 100 | <- | Minus |
| 2R | 17583242..17583948 | 12..718 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:46:10 Download gff for
BO08177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13470247..13470330 | 719..802 | 100 | <- | Minus |
| arm_2R | 13470747..13471453 | 12..718 | 99 | | Minus |
BO08177.complete Sequence
1430 bp assembled on 2008-08-15
> BO08177.complete
GAAGTTATCAGTCGACATGTCCAAGGGATCGGTGTTGCCACAATATATTG
CTGGCTTGTCGGCCAGCTTTGGTGCCCTCTGCATGGGCGCCTCCATTGGT
TGGTCCTCGCCCGTGGAGAATATGATAACGGTGAACACGGAATACGGCTT
TCCCATTAGCTCCAGTCAGTTCGGCTGGGTATCCTCGCTGCTGACCCTGG
GCGCCACTGTGATCTGCATTCCCATTGGTTTCGCCATCGATTGGATCGGC
AGGAGACCCACTATGTTAGCCCTAATTCCACCGTACATGGTGGGCTGGGT
GCTGATGCTGTTCGCCAAAAACGTGACCATGCTCTACTTCGGACGATTCA
TTCTTGGCATGTGCGGCGGAGCCTTTTGCGTAACAGCTCCCATGTACTGT
ACAGAGATTACGGCGACAGCACTACGAGGCACCATCGGATCCTTTTTCCA
GCTGCTGATTGTGTCGGGCGTGCTGTACGGCTATTTGGTGGGCGCCTTCC
TGCCCCTGCTCACCATCAATATCCTGTGCGCTATTCTGCCCGTAATCTTT
GCTATCATACACTTCTTCATGCCGGAGTCACCCGTCTACCTGGCCATGAA
GGGACGCAACGATGATGCCGCCAAGGCCTTGCAGTGGCTGCGCGGCAAGG
ATGCCGATATCGATGACGAGCTCAAGGAGATCCTGGAGGAGTCCCAGAAG
CAGATTGATATGCCACAGGTCAACATTCTGTCCTCCCTTCGTCGACCCAT
CGTCCTGAAGGGTCTTGGAATCGCTGTGCTCCTGCAGGTCTTCCAGCAGT
GGACGGGAATCAACGCCGTTCTCTTCTACTCCGCCTCCATTTTCGAGGAT
ACGGGCTCTGACATAAGTGGCAGCGATGCCACGCTTATCATTGGAGTCAC
CCAAGTGACCAGCACGCTGGTTGCCGTGGCCATTATCGACAAGGCTGGCC
GTCGCATCCTGCTCCTTATCTCTGGCGTTCTGATGGCCGTGTCCACTGCA
CTGATGGGCGTGTACTTTCAGCTAAAGGAGAACGATCCGGCTTCAATGGA
CAATTTCGGTTGGTTGCCGATCAGCAGTATCTGCATTTTCATAATCTTCT
TCTCGATTGGATTCGGACCGGTGCCGTGGCTGGTGATGGCGGAACTCTTC
TCGGAGGATGTGAAGAGTGTGGCAGGATCGATTGCCGGCACCAGCAACTG
GCTGTCGGCCTTCGTGGTCACGCTGCTCTTCCCAATCCTCAAGAGCTCGA
TCGGGCCGGGTCCGACCTTTTGGATCTTTACCGCGATCGCGGTCATCGCC
TTCTTCTACTCTCTGTTCTTCGTGCCGGAGACCAAGGGCAAGACAATAAT
CGAAATCCAGGACCTGCTGTCCGGAGGAAAGGGTGTCAAAAGTGATGACA
AGAGCCAGACGGCAAGCTTTCCTAGACCAT
BO08177.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:22:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6484-RA | 1398 | CG6484-PA | 1..1395 | 17..1411 | 6975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:22:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6484-RA | 1590 | CG6484-RA | 65..1464 | 12..1411 | 6985 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:22:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17583240..17583948 | 720..12 | 3530 | 99.9 | Minus |
| 2R | 25286936 | 2R | 17582133..17582828 | 1411..716 | 3480 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:22:10 has no hits.
BO08177.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:47:48 Download gff for
BO08177.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6484-RA | 62..1461 | 12..1411 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:50:53 Download gff for
BO08177.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6484-RA | 70..1464 | 17..1413 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:10:32 Download gff for
BO08177.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6484-RA | 67..1461 | 17..1413 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:14 Download gff for
BO08177.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6484-RA | 70..1464 | 17..1413 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:14 Download gff for
BO08177.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17582130..17582825 | 719..1413 | 99 | <- | Minus |
| 2R | 17583242..17583943 | 17..718 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:50:53 Download gff for
BO08177.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13469635..13470330 | 719..1413 | 99 | <- | Minus |
| arm_2R | 13470747..13471448 | 17..718 | 100 | | Minus |
BO08177.pep Sequence
Translation from 16 to 1429
> BO08177.pep
MSKGSVLPQYIAGLSASFGALCMGASIGWSSPVENMITVNTEYGFPISSS
QFGWVSSLLTLGATVICIPIGFAIDWIGRRPTMLALIPPYMVGWVLMLFA
KNVTMLYFGRFILGMCGGAFCVTAPMYCTEITATALRGTIGSFFQLLIVS
GVLYGYLVGAFLPLLTINILCAILPVIFAIIHFFMPESPVYLAMKGRNDD
AAKALQWLRGKDADIDDELKEILEESQKQIDMPQVNILSSLRRPIVLKGL
GIAVLLQVFQQWTGINAVLFYSASIFEDTGSDISGSDATLIIGVTQVTST
LVAVAIIDKAGRRILLLISGVLMAVSTALMGVYFQLKENDPASMDNFGWL
PISSICIFIIFFSIGFGPVPWLVMAELFSEDVKSVAGSIAGTSNWLSAFV
VTLLFPILKSSIGPGPTFWIFTAIAVIAFFYSLFFVPETKGKTIIEIQDL
LSGGKGVKSDDKSQTASFPRP
BO08177.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:31:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6484-PA | 465 | CG6484-PA | 1..465 | 1..465 | 2369 | 100 | Plus |
| CG10960-PA | 471 | CG10960-PA | 14..461 | 8..455 | 1239 | 51.7 | Plus |
| CG10960-PC | 471 | CG10960-PC | 14..461 | 8..455 | 1239 | 51.7 | Plus |
| CG10960-PB | 539 | CG10960-PB | 82..529 | 8..455 | 1239 | 51.7 | Plus |
| sut4-PA | 444 | CG1380-PA | 6..436 | 9..448 | 1210 | 51.8 | Plus |
