Clone Sequence Records
BO08180.3prime Sequence
851 bp (800 high quality bases) assembled on 2006-01-06
> BO08180.3prime
ATGGTCTAGAAAGCTTGCATCATAATTTCTCCTTTTCTTTTTCTGTTCTT
GGGGATCAGTATCACTCTCCTCCAGTTCGCTCTTGTTGCGTCGCTTCTCA
TAAATGAGAATGATGATGCACAGAATCAGCACCTCAGCACAGATGCCCAG
GAAAGGCCACAAGGCGGCAAATTTGCCCTTAACACGCACAGTTGTGACGT
CGCTGGCAGGAGTGGTGGTGTTCCCACCGTAGACATTGGCCGCATTTCGT
CCAATGCATTTGTATTCGCCTCTGTCGTCCAATGTCACATTATCCAGTGT
CAGAATGGCGTTAGGAACACCATTATCGTCTGGTTTGAGAATGAAGCGAT
CTGTGGCATTTGTCAGCGTTACATTGGCAAAGGTCCATGTCAACTCTGGT
TTGGTACCCACAACGCTGCAGGTCACCGACATCTTTTCACCCTCCACAAC
GGCTGTATTTGAAGGCACTCGTACAACAACGCGGGCAATTACTTCGATTT
CCTTGGACACGCCGTCAAACTCGCAACTGTATTTGCCATCGTCGTTCGTA
TCCGTCTTATCGATGATGAACTTGTTCTCGTCTGCGATTAACTTAAAGCG
ACCTCTGAGAGAAGGTACATCCGTCACAGCGGTGCCGTTCTTTTTCCATA
TGAGCACGCCGCCCGGCGTACCGTCTTTCACGTTGCAGCTGAGAACGAGC
GGCGATCTGATGTCGTANAATTTCATTTGATGCTCGGCATTATCATAGTT
TGGCACCAGCTTATCCATCTTGACGGGCAAGAGCGTCTGGTGCTGCAGAT
GCACCTGATGCCCCTGGCCACCCATCAGCATGTGACCGCCAGCACCCAGC
A
BO08180.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31605-PG | 897 | Bsg-RG | 62..894 | 851..19 | 4146 | 99.8 | Minus |
CG31605-PD | 798 | Bsg-RD | 73..795 | 765..43 | 3596 | 99.8 | Minus |
CG31605-PC | 798 | Bsg-RC | 73..795 | 765..43 | 3596 | 99.8 | Minus |
CG31605-PE | 798 | Bsg-RE | 73..795 | 765..43 | 3596 | 99.8 | Minus |
CG31605-PF | 798 | Bsg-RF | 73..795 | 765..43 | 3596 | 99.8 | Minus |
CG31605-PH | 798 | Bsg-RH | 73..795 | 765..43 | 3596 | 99.8 | Minus |
CG31605-PI | 798 | Bsg-RI | 73..795 | 765..43 | 3596 | 99.8 | Minus |
CG31605-PB | 798 | Bsg-RB | 73..795 | 765..43 | 3596 | 99.8 | Minus |
CG31605-PA | 798 | Bsg-RA | 73..795 | 765..43 | 3596 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:08:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bsg-RG | 8453 | CG31605-RG | 1595..2427 | 851..19 | 4154 | 99.9 | Minus |
Bsg-RB | 2744 | CG31605-RB | 445..1167 | 765..43 | 3604 | 99.9 | Minus |
Bsg-RH | 3001 | CG31605-RH | 702..1424 | 765..43 | 3604 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:08:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8107237..8107448 | 378..167 | 1030 | 99.1 | Minus |
2L | 23513712 | 2L | 8106839..8107000 | 647..486 | 810 | 100 | Minus |
2L | 23513712 | 2L | 8107747..8107881 | 177..43 | 675 | 100 | Minus |
2L | 23513712 | 2L | 8105691..8105810 | 765..646 | 589 | 99.2 | Minus |
2L | 23513712 | 2L | 8107065..8107173 | 486..378 | 545 | 100 | Minus |
2L | 23513712 | 2L | 8103417..8103503 | 851..765 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:08:21 has no hits.
BO08180.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:23 Download gff for
BO08180.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bsg-PG | 63..897 | 15..850 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:31:46 Download gff for
BO08180.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31605-PG | 63..897 | 15..850 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:47:40 Download gff for
BO08180.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bsg-RG | 1596..2434 | 11..850 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:44:59 Download gff for
BO08180.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bsg-RG | 1596..2434 | 11..850 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:44:59 Download gff for
BO08180.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8107238..8107438 | 177..377 | 100 | -> | Minus |
2L | 8107748..8107880 | 44..176 | 100 | -> | Minus |
2L | 8103418..8103503 | 765..850 | 100 | -> | Minus |
2L | 8105692..8105809 | 647..764 | 99 | -> | Minus |
2L | 8106840..8107000 | 486..646 | 100 | -> | Minus |
2L | 8107066..8107173 | 378..485 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:47:40 Download gff for
BO08180.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8103418..8103503 | 765..850 | 100 | -> | Minus |
arm_2L | 8105692..8105809 | 647..764 | 99 | -> | Minus |
arm_2L | 8106840..8107000 | 486..646 | 100 | -> | Minus |
arm_2L | 8107066..8107173 | 378..485 | 100 | -> | Minus |
arm_2L | 8107238..8107438 | 177..377 | 100 | -> | Minus |
arm_2L | 8107748..8107880 | 44..176 | 100 | -> | Minus |
BO08180.5prime Sequence
926 bp (837 high quality bases) assembled on 2006-01-06
> BO08180.5prime
GAAGTTATCAGTCGACATGATGGGTGGCGGTGGTGGCGTTGCTGGTGCGG
GCTTTTCCGCGGGCGCCAGTGGCCCAATGCTGGGTGCTGGCGGTCACATG
CTGATGGGTGGCCAGGGGCATCAGGTGCATCTGCAGCACCAGACGCTCTT
GCCCGTCAAGATGGATAAGCTGGTGCCAAACTATGATAATGCCGAGCATC
AAATGAAATTTTACGACATCAGATCGCCGCTCGTTCTCAGCTGCAACGTG
AAAGACGGTACGCCGGGCGGCGTGCTCATATGGAAAAAGAACGGCACCGC
TGTGACGGATGTACCTTCTCTCAGAGGTCGCTTTAAGTTAATCGCAGACG
AGAACAAGTTCATCATCGATAAGACGGATACGAACGACGATGGCAAATAC
AGTTGCGAGTTTGACGGCGTGTCCAAGGAAATCGAAGTAATTGCCCGCGT
TGTTGTACGAGTGCCTTCAAATACAGCCGTTGTGGAGGGTGAAAAGATGT
CGGTGACCTGCAGCGTTGTGGGTACCAAACCAGAGTTGACATGGACCTTT
GCCAATGTAACGCTGACAAATGCCACAGATCGCTTCATTCTCAAACCAGA
CGATAATGGTGTTCCTAACGCCATTCTGACACTGGATAATGTGACATTGG
ACGACAGAGGCGAATACAAATGCATTGGACGAAATGCGGCCAATGTCTAC
GGTGGGAACACCACCACTCCTGCCAGCGACGTCACAACTGTGCGTGTTAA
GGGCAAATTTGCCGCCTTGTGGCCTTTCCTGGGCATCTGTGCTGAGGTGC
TGATTCTGTGCATCATCATTCTCATTTATGAGAAGCGACGCAACAAGAGC
GAACTGGAGGAGAGTGATACTGATCCCCAAGAACAGAAAAAGAAAAGGAG
AAATTATGATGCAAGCTTTCTAGACC
BO08180.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31605-PG | 897 | Bsg-RG | 1..894 | 17..910 | 4470 | 100 | Plus |
CG31605-PD | 798 | Bsg-RD | 73..795 | 164..886 | 3615 | 100 | Plus |
CG31605-PC | 798 | Bsg-RC | 73..795 | 164..886 | 3615 | 100 | Plus |
CG31605-PE | 798 | Bsg-RE | 73..795 | 164..886 | 3615 | 100 | Plus |
CG31605-PF | 798 | Bsg-RF | 73..795 | 164..886 | 3615 | 100 | Plus |
CG31605-PH | 798 | Bsg-RH | 73..795 | 164..886 | 3615 | 100 | Plus |
CG31605-PI | 798 | Bsg-RI | 73..795 | 164..886 | 3615 | 100 | Plus |
CG31605-PB | 798 | Bsg-RB | 73..795 | 164..886 | 3615 | 100 | Plus |
CG31605-PA | 798 | Bsg-RA | 73..795 | 164..886 | 3615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:08:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bsg-RG | 8453 | CG31605-RG | 1533..2427 | 16..910 | 4475 | 100 | Plus |
Bsg-RB | 2744 | CG31605-RB | 445..1167 | 164..886 | 3615 | 100 | Plus |
Bsg-RH | 3001 | CG31605-RH | 702..1424 | 164..886 | 3615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:07:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8107237..8107448 | 551..762 | 1030 | 99.1 | Plus |
2L | 23513712 | 2L | 8106839..8107000 | 282..443 | 810 | 100 | Plus |
2L | 23513712 | 2L | 8103355..8103503 | 16..164 | 745 | 100 | Plus |
2L | 23513712 | 2L | 8107747..8107881 | 752..886 | 675 | 100 | Plus |
2L | 23513712 | 2L | 8105691..8105810 | 164..283 | 600 | 100 | Plus |
2L | 23513712 | 2L | 8107065..8107173 | 443..551 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:08:01 has no hits.
BO08180.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:24 Download gff for
BO08180.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bsg-PG | 1..897 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:31:47 Download gff for
BO08180.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31605-PG | 1..897 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:24:47 Download gff for
BO08180.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bsg-RG | 1528..2434 | 10..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:26:21 Download gff for
BO08180.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bsg-RG | 1528..2434 | 10..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:26:21 Download gff for
BO08180.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8103350..8103503 | 10..164 | 98 | -> | Plus |
2L | 8105692..8105809 | 165..282 | 100 | -> | Plus |
2L | 8106840..8107000 | 283..443 | 100 | -> | Plus |
2L | 8107066..8107173 | 444..551 | 100 | -> | Plus |
2L | 8107238..8107438 | 552..752 | 100 | -> | Plus |
2L | 8107748..8107880 | 753..885 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:24:47 Download gff for
BO08180.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8106840..8107000 | 283..443 | 100 | -> | Plus |
arm_2L | 8107066..8107173 | 444..551 | 100 | -> | Plus |
arm_2L | 8103350..8103503 | 10..164 | 98 | -> | Plus |
arm_2L | 8105692..8105809 | 165..282 | 100 | -> | Plus |
arm_2L | 8107238..8107438 | 552..752 | 100 | -> | Plus |
arm_2L | 8107748..8107880 | 753..885 | 100 | -> | Plus |
BO08180.complete Sequence
928 bp (928 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631091
> BO08180.complete
GAAGTTATCAGTCGACATGATGGGTGGCGGTGGTGGCGTTGCTGGTGCGG
GCTTTTCCGCGGGCGCCAGTGGCCCAATGCTGGGTGCTGGCGGTCACATG
CTGATGGGTGGCCAGGGGCATCAGGTGCATCTGCAGCACCAGACGCTCTT
GCCCGTCAAGATGGATAAGCTGGTGCCAAACTATGATAATGCCGAGCATC
AAATGAAATTTTACGACATCAGATCGCCGCTCGTTCTCAGCTGCAACGTG
AAAGACGGTACGCCGGGCGGCGTGCTCATATGGAAAAAGAACGGCACCGC
TGTGACGGATGTACCTTCTCTCAGAGGTCGCTTTAAGTTAATCGCAGACG
AGAACAAGTTCATCATCGATAAGACGGATACGAACGACGATGGCAAATAC
AGTTGCGAGTTTGACGGCGTGTCCAAGGAAATCGAAGTAATTGCCCGCGT
TGTTGTACGAGTGCCTTCAAATACAGCCGTTGTGGAGGGTGAAAAGATGT
CGGTGACCTGCAGCGTTGTGGGTACCAAACCAGAGTTGACATGGACCTTT
GCCAATGTAACGCTGACAAATGCCACAGATCGCTTCATTCTCAAACCAGA
CGATAATGGTGTTCCTAACGCCATTCTGACACTGGATAATGTGACATTGG
ACGACAGAGGCGAATACAAATGCATTGGACGAAATGCGGCCAATGTCTAC
GGTGGGAACACCACCACTCCTGCCAGCGACGTCACAACTGTGCGTGTTAA
GGGCAAATTTGCCGCCTTGTGGCCTTTCCTGGGCATCTGTGCTGAGGTGC
TGATTCTGTGCATCATCATTCTCATTTATGAGAAGCGACGCAACAAGAGC
GAACTGGAGGAGAGTGATACTGATCCCCAAGAACAGAAAAAGAAAAGGAG
AAATTATGATGCAAGCTTTCTAGACCAT
BO08180.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:52:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bsg-RG | 1947 | CG31605-PG | 1050..1944 | 16..910 | 4475 | 100 | Plus |
Bsg-RB | 798 | CG31605-PB | 73..795 | 164..886 | 3615 | 100 | Plus |
Bsg-RH | 798 | CG31605-PH | 73..795 | 164..886 | 3615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bsg-RG | 8453 | CG31605-RG | 1533..2427 | 16..910 | 4475 | 100 | Plus |
Bsg-RB | 2744 | CG31605-RB | 445..1167 | 164..886 | 3615 | 100 | Plus |
Bsg-RH | 3001 | CG31605-RH | 702..1424 | 164..886 | 3615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8107237..8107448 | 551..762 | 1030 | 99.1 | Plus |
2L | 23513712 | 2L | 8106839..8107000 | 282..443 | 810 | 100 | Plus |
2L | 23513712 | 2L | 8103355..8103503 | 16..164 | 745 | 100 | Plus |
2L | 23513712 | 2L | 8107747..8107881 | 752..886 | 675 | 100 | Plus |
2L | 23513712 | 2L | 8105691..8105810 | 164..283 | 600 | 100 | Plus |
2L | 23513712 | 2L | 8107065..8107173 | 443..551 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:52:02 has no hits.
BO08180.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:25 Download gff for
BO08180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bsg-RG | 1045..1947 | 10..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:33:24 Download gff for
BO08180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bsg-RG | 1463..2369 | 10..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:36:43 Download gff for
BO08180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bsg-RG | 1534..2427 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:26 Download gff for
BO08180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bsg-RG | 1463..2369 | 10..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:11:55 Download gff for
BO08180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bsg-RG | 1534..2427 | 17..912 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:11:55 Download gff for
BO08180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8103356..8103503 | 17..164 | 100 | -> | Plus |
2L | 8105692..8105809 | 165..282 | 100 | -> | Plus |
2L | 8106840..8107000 | 283..443 | 100 | -> | Plus |
2L | 8107066..8107173 | 444..551 | 100 | -> | Plus |
2L | 8107238..8107438 | 552..752 | 100 | -> | Plus |
2L | 8107748..8107880 | 753..885 | 100 | -> | Plus |
2L | 8110481..8110505 | 886..912 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:36:43 Download gff for
BO08180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8103356..8103503 | 17..164 | 100 | -> | Plus |
arm_2L | 8105692..8105809 | 165..282 | 100 | -> | Plus |
arm_2L | 8106840..8107000 | 283..443 | 100 | -> | Plus |
arm_2L | 8107066..8107173 | 444..551 | 100 | -> | Plus |
arm_2L | 8107238..8107438 | 552..752 | 100 | -> | Plus |
arm_2L | 8107748..8107880 | 753..885 | 100 | -> | Plus |
arm_2L | 8110481..8110505 | 886..912 | 92 | | Plus |
BO08180.pep Sequence
Translation from 16 to 928
> BO08180.pep
MMGGGGGVAGAGFSAGASGPMLGAGGHMLMGGQGHQVHLQHQTLLPVKMD
KLVPNYDNAEHQMKFYDIRSPLVLSCNVKDGTPGGVLIWKKNGTAVTDVP
SLRGRFKLIADENKFIIDKTDTNDDGKYSCEFDGVSKEIEVIARVVVRVP
SNTAVVEGEKMSVTCSVVGTKPELTWTFANVTLTNATDRFILKPDDNGVP
NAILTLDNVTLDDRGEYKCIGRNAANVYGGNTTTPASDVTTVRVKGKFAA
LWPFLGICAEVLILCIIILIYEKRRNKSELEESDTDPQEQKKKRRNYDAS
FLDH
BO08180.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bsg-PG | 648 | CG31605-PG | 351..648 | 1..298 | 1566 | 100 | Plus |
Bsg-PB | 265 | CG31605-PB | 24..265 | 49..290 | 1262 | 99.6 | Plus |
Bsg-PH | 265 | CG31605-PH | 24..265 | 49..290 | 1262 | 99.6 | Plus |
Bsg-PF | 265 | CG31605-PF | 24..265 | 49..290 | 1262 | 99.6 | Plus |
Bsg-PA | 265 | CG31605-PA | 24..265 | 49..290 | 1262 | 99.6 | Plus |