Clone Sequence Records
BO08182.3prime Sequence
945 bp (786 high quality bases) assembled on 2006-01-06
> BO08182.3prime
ATGGTCTAGAAAGCTTGCGTCAATGTTCAGCGAGGACATTAACTCTTCGA
CGGTGATATCTATATCCTGAAAGGCCACGCCCAGCCAGGCGACCACCAGG
CAGTAGTGCTGGAAAAGCTGGAGCAGCAGTTCACCCTCGTCCAGCATTTC
CAGCCGCTCGATTCGCTGCCTCTCGGCCGCCGAGATGCTCTCGTACACCT
GGACCATGTCCCAGGCGCGGGCGCCAGTCCAGCCGCTGTCCTTGAAGCGG
TTCCTCTGCGTATCCAGCGACAAGCAGGATTCAACGCCGGCCAGGCTGCA
GCCGCGTCCGCGCAGATTGTTGAGCATCACATCGCCGAAACGGTCGTTCA
TGTTGACCTGTTCGTAGTTGACAAAGACGGCTGCTTGGAACTTTTGCGCA
ATCCATTTGAGCAGGTTACGGCAGTTTTGCGCCTCGATATAGACCAGAAC
GCACTCGGCGAGAAATATGGTGGGCAGGGAGTAATCAACTTCTGCCTGCT
GCAGCTTGCTGTCCACCTCGTCGAGGTTGCGCAGGTCAACGCCCATCAGG
TGGTAGCTTGGTCCATGCAGATCCGTGGGACTGAGCCGCACCTCACCATC
CTCGTCGTGAATCCTGGCCAGCAGGGCCTTGTTGCGCTTAATTGTGTAGC
ACTTGCGGGCGGTGACCGTGGGGAAGTCCAGCTCAATGAAGTTCTTCACC
TGGTGGGCGGTGTCCCTCAGCCGGAAGTAGAGTGTGTCGAAGCCGCAGCC
CAAATTGATGATCTGGCAGTTGCCCGAGGTTTTCTTTAGAAACTTCTCGA
CGCACATCTCCACGCCCTTGACACGGGCAAAGTAGCCGCGATTGATCTCC
GGCGCCTTGCGCTCTTGGTTGCGCACAAAGTACCCGATGTAGTCGTCCTT
CCAGTAGCCCAAGCGCACCGCACATCGCTTGCAATCGCTGGCATC
BO08182.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3793-PA | 1014 | CG3793-RA | 85..1011 | 945..19 | 4635 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:46:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3793-RA | 1582 | CG3793-RA | 241..1167 | 945..19 | 4635 | 100 | Minus |
CG3793-RB | 1738 | CG3793-RB | 241..1179 | 945..19 | 4505 | 98.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:46:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15764781..15765217 | 785..349 | 2155 | 99.5 | Minus |
2L | 23513712 | 2L | 15765270..15765577 | 360..53 | 1540 | 100 | Minus |
2L | 23513712 | 2L | 15764460..15764621 | 945..784 | 810 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 15:46:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc | 4725 | Doc DMW1DOC 4725bp Derived from X17551 (g8821) (Rel. 29, Last updated, Version 2). | 520..556 | 778..742 | 113 | 78.4 | Minus |
BO08182.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:25 Download gff for
BO08182.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3793-PA | 85..1014 | 18..945 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:31:49 Download gff for
BO08182.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3793-PA | 85..1014 | 18..945 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 15:59:53 Download gff for
BO08182.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3793-RA | 241..1167 | 19..945 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:31:11 Download gff for
BO08182.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3793-RA | 241..1167 | 19..945 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:31:11 Download gff for
BO08182.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15764460..15764621 | 784..945 | 100 | -> | Minus |
2L | 15764783..15765208 | 358..783 | 100 | -> | Minus |
2L | 15765273..15765577 | 53..357 | 100 | -> | Minus |
2L | 15765675..15765708 | 19..52 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 15:59:53 Download gff for
BO08182.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15764460..15764621 | 784..945 | 100 | -> | Minus |
arm_2L | 15764783..15765208 | 358..783 | 100 | -> | Minus |
arm_2L | 15765273..15765577 | 53..357 | 100 | -> | Minus |
arm_2L | 15765675..15765708 | 19..52 | 100 | | Minus |
BO08182.5prime Sequence
799 bp (798 high quality bases) assembled on 2006-01-06
> BO08182.5prime
GAAGTTATCAGTCGACATGGAGCCGCCAGCGTCGGCCGGAATCGCCGGCT
CGACGCACAAGTTCCATCCGTGCGACGAGGCTGTGATAGCCACCAACGAC
GATGCCAGCGATTGCAAGCGATGTGCGGTGCGCTTGGGCTACTGGAAGGA
CGACTACATCGGGTACTTTGTGCGCAACCAAGAGCGCAAGGCGCCGGAGA
TCAATCGCGGCTACTTTGCCCGTGTCAAGGGCGTGGAGATGTGCGTCGAG
AAGTTTCTAAAGAAAACCTCGGGCAACTGCCAGATCATCAATTTGGGCTG
CGGCTTCGACACACTCTACTTCCGGCTGAGGGACACCGCCCACCAGGTGA
AGAACTTCATTGAGCTGGACTTCCCCACGGTCACCGCCCGCAAGTGCTAC
ACAATTAAGCGCAACAAGGCCCTGCTGGCCAGGATTCACGACGAGGATGG
TGAGGTGCGGCTCAGTCCCACGGATCTGCATGGACCAAGCTACCACCTGA
TGGGCGTTGACCTGCGCAACCTCGACGAGGTGGACAGCAAGCTGCAGCAG
GCAGAAGTTGATTACTCCCTGCCCACCATATTTCTCGCCGAGTGCGTTCT
GGTCTATATCGAGGCGCAAAACTGCCGTAACCTGCTCAAATGGATTGCGC
AAAAGTTCCAAGCAGCCGTCTTTGTCAACTACGAACAGGTCAACATGAAC
GACCGTTTCGGCGATGTGATGCTCAACAATCTGCGCGGACGCGGCTGCAG
CCTGGCCGGCGTTGAATCCTGCTTGTCGCTGGATACGCAGAGGAACCGC
BO08182.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3793-PA | 1014 | CG3793-RA | 1..783 | 17..799 | 3915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:35:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3793-RB | 1738 | CG3793-RB | 156..939 | 16..799 | 3920 | 100 | Plus |
CG3793-RA | 1582 | CG3793-RA | 156..939 | 16..799 | 3920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:35:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15764781..15765217 | 261..697 | 2155 | 99.5 | Plus |
2L | 23513712 | 2L | 15764375..15764621 | 16..262 | 1235 | 100 | Plus |
2L | 23513712 | 2L | 15765270..15765383 | 686..799 | 570 | 100 | Plus |
Blast to na_te.dros performed 2015-02-04 20:35:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc | 4725 | Doc DMW1DOC 4725bp Derived from X17551 (g8821) (Rel. 29, Last updated, Version 2). | 520..556 | 268..304 | 113 | 78.4 | Plus |
BO08182.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:26 Download gff for
BO08182.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3793-PA | 1..783 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:31:50 Download gff for
BO08182.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3793-PA | 1..783 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:27:51 Download gff for
BO08182.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3793-RA | 150..939 | 9..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:52:19 Download gff for
BO08182.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3793-RA | 150..939 | 9..799 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:52:19 Download gff for
BO08182.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15764369..15764621 | 9..262 | 98 | -> | Plus |
2L | 15764783..15765208 | 263..688 | 100 | -> | Plus |
2L | 15765273..15765383 | 689..799 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:27:51 Download gff for
BO08182.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15764369..15764621 | 9..262 | 98 | -> | Plus |
arm_2L | 15764783..15765208 | 263..688 | 100 | -> | Plus |
arm_2L | 15765273..15765383 | 689..799 | 100 | | Plus |
BO08182.complete Sequence
1045 bp (1045 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631092
> BO08182.complete
GAAGTTATCAGTCGACATGGAGCCGCCAGCGTCGGCCGGAATCGCCGGCT
CGACGCACAAGTTCCATCCGTGCGACGAGGCTGTGATAGCCACCAACGAC
GATGCCAGCGATTGCAAGCGATGTGCGGTGCGCTTGGGCTACTGGAAGGA
CGACTACATCGGGTACTTTGTGCGCAACCAAGAGCGCAAGGCGCCGGAGA
TCAATCGCGGCTACTTTGCCCGTGTCAAGGGCGTGGAGATGTGCGTCGAG
AAGTTTCTAAAGAAAACCTCGGGCAACTGCCAGATCATCAATTTGGGCTG
CGGCTTCGACACACTCTACTTCCGGCTGAGGGACACCGCCCACCAGGTGA
AGAACTTCATTGAGCTGGACTTCCCCACGGTCACCGCCCGCAAGTGCTAC
ACAATTAAGCGCAACAAGGCCCTGCTGGCCAGGATTCACGACGAGGATGG
TGAGGTGCGGCTCAGTCCCACGGATCTGCATGGACCAAGCTACCACCTGA
TGGGCGTTGACCTGCGCAACCTCGACGAGGTGGACAGCAAGCTGCAGCAG
GCAGAAGTTGATTACTCCCTGCCCACCATATTTCTCGCCGAGTGCGTTCT
GGTCTATATCGAGGCGCAAAACTGCCGTAACCTGCTCAAATGGATTGCGC
AAAAGTTCCAAGCAGCCGTCTTTGTCAACTACGAACAGGTCAACATGAAC
GACCGTTTCGGCGATGTGATGCTCAACAATCTGCGCGGACGCGGCTGCAG
CCTGGCCGGCGTTGAATCCTGCTTGTCGCTGGATACGCAGAGGAACCGCT
TCAAGGACAGCGGCTGGACTGGCGCCCGCGCCTGGGACATGGTCCAGGTG
TACGAGAGCATCTCGGCGGCCGAGAGGCAGCGAATCGAGCGGCTGGAAAT
GCTGGACGAGGGTGAACTGCTGCTCCAGCTTTTCCAGCACTACTGCCTGG
TGGTCGCCTGGCTGGGCGTGGCCTTTCAGGATATAGATATCACCGTCGAA
GAGTTAATGTCCTCGCTGAACATTGACGCAAGCTTTCTAGACCAT
BO08182.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:07:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3793-RA | 1014 | CG3793-PA | 1..1011 | 17..1027 | 5055 | 100 | Plus |
CG3793-RB | 1026 | CG3793-PB | 1..1023 | 17..1027 | 4900 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:07:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3793-RA | 1582 | CG3793-RA | 156..1167 | 16..1027 | 5060 | 100 | Plus |
CG3793-RB | 1738 | CG3793-RB | 156..1179 | 16..1027 | 4905 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:07:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15764781..15765217 | 261..697 | 2155 | 99.5 | Plus |
2L | 23513712 | 2L | 15765270..15765577 | 686..993 | 1540 | 100 | Plus |
2L | 23513712 | 2L | 15764375..15764621 | 16..262 | 1235 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 20:07:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc | 4725 | Doc DMW1DOC 4725bp Derived from X17551 (g8821) (Rel. 29, Last updated, Version 2). | 520..556 | 268..304 | 113 | 78.4 | Plus |
BO08182.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:27 Download gff for
BO08182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3793-RA | 1..1014 | 17..1028 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:33:26 Download gff for
BO08182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3793-RA | 140..1157 | 9..1027 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:23 Download gff for
BO08182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3793-RA | 157..1167 | 17..1029 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:27 Download gff for
BO08182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3793-RA | 140..1157 | 9..1027 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:11 Download gff for
BO08182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3793-RA | 157..1167 | 17..1029 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:11 Download gff for
BO08182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15764376..15764621 | 17..262 | 100 | -> | Plus |
2L | 15764783..15765208 | 263..688 | 100 | -> | Plus |
2L | 15765273..15765577 | 689..993 | 100 | -> | Plus |
2L | 15765675..15765708 | 994..1029 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:23 Download gff for
BO08182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15764376..15764621 | 17..262 | 100 | -> | Plus |
arm_2L | 15764783..15765208 | 263..688 | 100 | -> | Plus |
arm_2L | 15765273..15765577 | 689..993 | 100 | -> | Plus |
arm_2L | 15765675..15765708 | 994..1029 | 94 | | Plus |
BO08182.pep Sequence
Translation from 16 to 1045
> BO08182.pep
MEPPASAGIAGSTHKFHPCDEAVIATNDDASDCKRCAVRLGYWKDDYIGY
FVRNQERKAPEINRGYFARVKGVEMCVEKFLKKTSGNCQIINLGCGFDTL
YFRLRDTAHQVKNFIELDFPTVTARKCYTIKRNKALLARIHDEDGEVRLS
PTDLHGPSYHLMGVDLRNLDEVDSKLQQAEVDYSLPTIFLAECVLVYIEA
QNCRNLLKWIAQKFQAAVFVNYEQVNMNDRFGDVMLNNLRGRGCSLAGVE
SCLSLDTQRNRFKDSGWTGARAWDMVQVYESISAAERQRIERLEMLDEGE
LLLQLFQHYCLVVAWLGVAFQDIDITVEELMSSLNIDASFLDH
BO08182.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3793-PA | 337 | CG3793-PA | 1..337 | 1..337 | 1783 | 100 | Plus |
CG3793-PB | 341 | CG3793-PB | 1..341 | 1..337 | 1768 | 98.8 | Plus |