Clone BO08183 Report

Search the DGRC for BO08183

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:81
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptCG10949-RA
Protein status:BO08183.pep: validated full length
Sequenced Size:1411

Clone Sequence Records

BO08183.3prime Sequence

927 bp (806 high quality bases) assembled on 2006-01-06

> BO08183.3prime
ATGGTCTAGAAAGCTTGCGTTAATGACCTGACAAGGTGCCACATCCTCGA
TCTCCTCGCCATCGAGGGCTTTGATTTGGCACTGGCACAGGAACTGCACG
ATCTTACGCTCGGCACTTGCCCGCTCAGACGGACTCAGTCCGTCCAGCAG
CATCTGAGCCTTGGCAAGCAGGCTGTTGGCAGGCTGTGTACTTCGCTGTT
CTCGCTCCTGCTCCTGTTCGTGGTGAATCTGGGCCTGCAGCTCCCGGGAT
TGCTGAAGCACGGTCTCCATGTTGGCAATCACGGTGGTCAACAGTTTGTC
GGAGATGGCGGCAGACGGTACAGAGTCCCCAGGGAGAGAGGAGGACTCCT
CTACGACGGGATTTACCCTGGCGATTGTGTGAATTATTTCCTCACTGGTG
GCCGGCGTGGTGGTGGTCACCTGGAGCTGCTGTGGTGGCTCCAAGTCCTG
CCGTGCCGTCGCTTCGCTGAGGATAAAATCGTACGGCGTTGCTTGCTCCG
CCTCCGATAGTATCTCAATCTCTTCATCGTAGGCCAACTCAAGATCATCC
TCCAGATCGTCGTTGTCCGTACTGTAGGGGTAATCAGCGCCCCAGATTTG
CTCACCACTGGAGATCACCATTCCCTCCGGCTGTTTGCTGGTCTTTCCCG
AAGGATTTCCTGCTTTGGGTGGTCGTCCACGTCGCTTGATGTTCTCCAAA
ACCAGGGGCACTCCTTTGCGGAAGTGGCGGCCCAGAAAGAGAAGGTCGTT
AAAGTACCTCCACGTGATGGGCGTGGACTGGTTGATCTGATGACTGCGGA
ACTCCCGCCCGAAACGATCACGCAGCTTCTTCCAGCGGGTGTAGCAAAGT
TCCTCCGACACATTTAGGTTTTCAGAAATCTCTCGCCAGGCTTCGTTTTT
CGCTGCTAGGTTCTTGGAGACTCTGAT

BO08183.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG10949-PA 1380 CG10949-RA 469..1377 927..19 4520 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:02:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG10949-RB 1689 CG10949-RB 683..1591 927..19 4530 99.9 Minus
CG10949-RA 1539 CG10949-RA 533..1441 927..19 4530 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:02:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20415271..20416107 19..855 4170 99.9 Plus
2L 23513712 2L 20416164..20416236 855..927 365 100 Plus
Blast to na_te.dros performed on 2015-02-11 18:02:14 has no hits.

BO08183.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:27 Download gff for BO08183.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10949-PA 469..1380 16..927 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:31:51 Download gff for BO08183.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10949-PA 469..1380 16..927 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:46:13 Download gff for BO08183.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10949-RA 533..1448 11..927 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:39:57 Download gff for BO08183.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10949-RA 533..1448 11..927 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:39:57 Download gff for BO08183.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20415264..20416106 11..854 99 <- Plus
2L 20416164..20416236 855..927 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:46:13 Download gff for BO08183.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20415264..20416106 11..854 99 <- Plus
arm_2L 20416164..20416236 855..927 100   Plus

BO08183.5prime Sequence

908 bp (750 high quality bases) assembled on 2006-01-06

> BO08183.5prime
GAAGTTATCAGTCGACATGGACGACGATGAGCTGATTAAATTGATAGAGA
GACACCCGATCCTGTACGACAAGGACTGCGCGAGGAGCGTGAAGAATGCG
GCGCAAAAGGACGCGGCCTGGAAGGCCATCTCCCAGAAGTTAGGAGCCTC
GGAACGGGCGTGCATTACGCGCTGGAAGAGCATTCGCGATCGTTTCGGCA
AGGAGTTTCGCCGTTTCCAGGAGCGTCCGGATGAGCCCACCTACTGGGAC
ATGTTTCCGCGACTGCTCTTTCTCAAGGATCACTACAAACAGGGACTGGC
AAGGAACGAGAGTCTCGACGGGATGCGTTTTGAGCCCAGGGAGCGGAAAA
AGCGCACAAAAGTGGACATGGAGCAGGAGAGGCGGAGAAAGGACGAGGAG
GAGGAGGACTCCCAGGATGACCTGCTGAACGAGCAGCTCATTGAGCTGGT
CAAGTCTCATCCCGTGCTGTATGATCGTCACAAGATCAGAGTCTCCAAGA
ACCTAGCAGCGAAAAACGAAGCCTGGCGAGAGATTTCTGAAAACCTAAAT
GTGTCGGAGGAACTTTGCTACAACCGCTGGAAGAAGCTGCGTGATCGTTT
CGGGCGGGAGTTCCGCAGTCATCAGATCAACCAGTCCACGCCCATCACGT
GGAGGTACTTTAACGACCTTCTCTTTCTGGGCCGCCACTTCCGCAAAGGA
GTGCCCCTGGTTTTGGAGAACATCAAGCGACGTGGACGACCACCCAAAGC
AGGAAATCCTTCGGGAAAGACCAGCAAACAGCCGGAGGGAATGGTGATCT
CCAGTGGTGAGCAAATCTGGGGCGCTGATTACCCCTACAGTACGGACAAC
GACGATCTGGAGGATGATCTTGAGTTGGCCTACGATGAAGAGATTGAGAT
ACTATCGG

BO08183.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG10949-PA 1380 CG10949-RA 1..892 17..908 4460 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:38:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG10949-RB 1689 CG10949-RB 215..1106 17..908 4460 100 Plus
CG10949-RA 1539 CG10949-RA 65..956 17..908 4460 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:38:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20416164..20416704 557..17 2705 100 Minus
2L 23513712 2L 20415756..20416107 908..557 1760 100 Minus
Blast to na_te.dros performed on 2015-02-13 13:38:28 has no hits.

BO08183.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:28 Download gff for BO08183.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10949-PA 1..892 17..908 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:31:53 Download gff for BO08183.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10949-PA 1..892 17..908 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:10:58 Download gff for BO08183.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10949-RA 62..956 12..908 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:04:22 Download gff for BO08183.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10949-RA 62..956 12..908 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:04:22 Download gff for BO08183.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20415756..20416106 558..908 100 <- Minus
2L 20416164..20416707 12..557 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:10:58 Download gff for BO08183.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20415756..20416106 558..908 100 <- Minus
arm_2L 20416164..20416707 12..557 99   Minus

BO08183.complete Sequence

1411 bp (1411 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631093

> BO08183.complete
GAAGTTATCAGTCGACATGGACGACGATGAGCTGATTAAATTGATAGAGA
GACACCCGATCCTGTACGACAAGGACTGCGCGAGGAGCGTGAAGAATGCG
GCGCAAAAGGACGCGGCCTGGAAGGCCATCTCCCAGAAGTTAGGAGCCTC
GGAACGGGCGTGCATTACGCGCTGGAAGAGCATTCGCGATCGTTTCGGCA
AGGAGTTTCGCCGTTTCCAGGAGCGTCCGGATGAGCCCACCTACTGGGAC
ATGTTTCCGCGACTGCTCTTTCTCAAGGATCACTACAAACAGGGACTGGC
AAGGAACGAGAGTCTCGACGGGATGCGTTTTGAGCCCAGGGAGCGGAAAA
AGCGCACAAAAGTGGACATGGAGCAGGAGAGGCGGAGAAAGGACGAGGAG
GAGGAGGACTCCCAGGATGACCTGCTGAACGAGCAGCTCATTGAGCTGGT
CAAGTCTCATCCCGTGCTGTATGATCGTCACAAGATCAGAGTCTCCAAGA
ACCTAGCAGCGAAAAACGAAGCCTGGCGAGAGATTTCTGAAAACCTAAAT
GTGTCGGAGGAACTTTGCTACAACCGCTGGAAGAAGCTGCGTGATCGTTT
CGGGCGGGAGTTCCGCAGTCATCAGATCAACCAGTCCACGCCCATCACGT
GGAGGTACTTTAACGACCTTCTCTTTCTGGGCCGCCACTTCCGCAAAGGA
GTGCCCCTGGTTTTGGAGAACATCAAGCGACGTGGACGACCACCCAAAGC
AGGAAATCCTTCGGGAAAGACCAGCAAACAGCCGGAGGGAATGGTGATCT
CCAGTGGTGAGCAAATCTGGGGCGCTGATTACCCCTACAGTACGGACAAC
GACGATCTGGAGGATGATCTTGAGTTGGCCTACGATGAAGAGATTGAGAT
ACTATCGGAGGCGGAGCAAGCAACGCCGTACGATTTTATCCTCAGCGAAG
CGACGGCACGGCAGGACTTGGAGCCACCACAGCAGCTCCAGGTGACCACC
ACCACGCCGGCCACCAGTGAGGAAATAATTCACACAATCGCCAGGGTAAA
TCCCGTCGTAGAGGAGTCCTCCTCTCTCCCTGGGGACTCTGTACCGTCTG
CCGCCATCTCCGACAAACTGTTGACCACCGTGATTGCCAACATGGAGACC
GTGCTTCAGCAATCCCGGGAGCTGCAGGCCCAGATTCACCACGAACAGGA
GCAGGAGCGAGAACAGCGAAGTACACAGCCTGCCAACAGCCTGCTTGCCA
AGGCTCAGATGCTGCTGGACGGACTGAGTCCGTCTGAGCGGGCAAGTGCC
GAGCGTAAGATCGTGCAGTTCCTGTGCCAGTGCCAAATCAAAGCCCTCGA
TGGCGAGGAGATCGAGGATGTGGCACCTTGTCAGGTCATTAACGCAAGCT
TTCTAGACCAT

BO08183.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:14:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG10949-RB 1380 CG10949-PB 1..1377 17..1393 6885 100 Plus
CG10949-RA 1380 CG10949-PA 1..1377 17..1393 6885 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:14:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG10949-RB 1689 CG10949-RB 215..1591 17..1393 6885 100 Plus
CG10949-RA 1539 CG10949-RA 65..1441 17..1393 6885 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:14:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20415271..20416107 1393..557 4185 100 Minus
2L 23513712 2L 20416164..20416704 557..17 2705 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:14:03 has no hits.

BO08183.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:28 Download gff for BO08183.complete
Subject Subject Range Query Range Percent Splice Strand
CG10949-RA 1..1380 17..1396 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:33:28 Download gff for BO08183.complete
Subject Subject Range Query Range Percent Splice Strand
CG10949-RA 212..1598 12..1401 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:16:42 Download gff for BO08183.complete
Subject Subject Range Query Range Percent Splice Strand
CG10949-RA 65..1441 17..1395 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:28 Download gff for BO08183.complete
Subject Subject Range Query Range Percent Splice Strand
CG10949-RA 212..1598 12..1401 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:16:27 Download gff for BO08183.complete
Subject Subject Range Query Range Percent Splice Strand
CG10949-RA 65..1441 17..1395 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:16:27 Download gff for BO08183.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20415268..20416106 558..1395 99 <- Minus
2L 20416164..20416704 17..557 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:16:42 Download gff for BO08183.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20415268..20416106 558..1395 99 <- Minus
arm_2L 20416164..20416704 17..557 100   Minus

BO08183.pep Sequence

Translation from 16 to 1411

> BO08183.pep
MDDDELIKLIERHPILYDKDCARSVKNAAQKDAAWKAISQKLGASERACI
TRWKSIRDRFGKEFRRFQERPDEPTYWDMFPRLLFLKDHYKQGLARNESL
DGMRFEPRERKKRTKVDMEQERRRKDEEEEDSQDDLLNEQLIELVKSHPV
LYDRHKIRVSKNLAAKNEAWREISENLNVSEELCYNRWKKLRDRFGREFR
SHQINQSTPITWRYFNDLLFLGRHFRKGVPLVLENIKRRGRPPKAGNPSG
KTSKQPEGMVISSGEQIWGADYPYSTDNDDLEDDLELAYDEEIEILSEAE
QATPYDFILSEATARQDLEPPQQLQVTTTTPATSEEIIHTIARVNPVVEE
SSSLPGDSVPSAAISDKLLTTVIANMETVLQQSRELQAQIHHEQEQEREQ
RSTQPANSLLAKAQMLLDGLSPSERASAERKIVQFLCQCQIKALDGEEIE
DVAPCQVINASFLDH

BO08183.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG10949-PB 459 CG10949-PB 1..459 1..459 2381 100 Plus
CG10949-PA 459 CG10949-PA 1..459 1..459 2381 100 Plus
Adf1-PC 262 CG15845-PC 9..245 129..391 173 25.7 Plus
Adf1-PB 253 CG15845-PB 2..236 131..391 170 25.6 Plus
Adf1-PA 253 CG15845-PA 2..236 131..391 170 25.6 Plus