Clone Sequence Records
BO08183.3prime Sequence
927 bp (806 high quality bases) assembled on 2006-01-06
> BO08183.3prime
ATGGTCTAGAAAGCTTGCGTTAATGACCTGACAAGGTGCCACATCCTCGA
TCTCCTCGCCATCGAGGGCTTTGATTTGGCACTGGCACAGGAACTGCACG
ATCTTACGCTCGGCACTTGCCCGCTCAGACGGACTCAGTCCGTCCAGCAG
CATCTGAGCCTTGGCAAGCAGGCTGTTGGCAGGCTGTGTACTTCGCTGTT
CTCGCTCCTGCTCCTGTTCGTGGTGAATCTGGGCCTGCAGCTCCCGGGAT
TGCTGAAGCACGGTCTCCATGTTGGCAATCACGGTGGTCAACAGTTTGTC
GGAGATGGCGGCAGACGGTACAGAGTCCCCAGGGAGAGAGGAGGACTCCT
CTACGACGGGATTTACCCTGGCGATTGTGTGAATTATTTCCTCACTGGTG
GCCGGCGTGGTGGTGGTCACCTGGAGCTGCTGTGGTGGCTCCAAGTCCTG
CCGTGCCGTCGCTTCGCTGAGGATAAAATCGTACGGCGTTGCTTGCTCCG
CCTCCGATAGTATCTCAATCTCTTCATCGTAGGCCAACTCAAGATCATCC
TCCAGATCGTCGTTGTCCGTACTGTAGGGGTAATCAGCGCCCCAGATTTG
CTCACCACTGGAGATCACCATTCCCTCCGGCTGTTTGCTGGTCTTTCCCG
AAGGATTTCCTGCTTTGGGTGGTCGTCCACGTCGCTTGATGTTCTCCAAA
ACCAGGGGCACTCCTTTGCGGAAGTGGCGGCCCAGAAAGAGAAGGTCGTT
AAAGTACCTCCACGTGATGGGCGTGGACTGGTTGATCTGATGACTGCGGA
ACTCCCGCCCGAAACGATCACGCAGCTTCTTCCAGCGGGTGTAGCAAAGT
TCCTCCGACACATTTAGGTTTTCAGAAATCTCTCGCCAGGCTTCGTTTTT
CGCTGCTAGGTTCTTGGAGACTCTGAT
BO08183.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10949-PA | 1380 | CG10949-RA | 469..1377 | 927..19 | 4520 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:02:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10949-RB | 1689 | CG10949-RB | 683..1591 | 927..19 | 4530 | 99.9 | Minus |
CG10949-RA | 1539 | CG10949-RA | 533..1441 | 927..19 | 4530 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:02:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20415271..20416107 | 19..855 | 4170 | 99.9 | Plus |
2L | 23513712 | 2L | 20416164..20416236 | 855..927 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:02:14 has no hits.
BO08183.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:27 Download gff for
BO08183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10949-PA | 469..1380 | 16..927 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:31:51 Download gff for
BO08183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10949-PA | 469..1380 | 16..927 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:46:13 Download gff for
BO08183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10949-RA | 533..1448 | 11..927 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:39:57 Download gff for
BO08183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10949-RA | 533..1448 | 11..927 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:39:57 Download gff for
BO08183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20415264..20416106 | 11..854 | 99 | <- | Plus |
2L | 20416164..20416236 | 855..927 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:46:13 Download gff for
BO08183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20415264..20416106 | 11..854 | 99 | <- | Plus |
arm_2L | 20416164..20416236 | 855..927 | 100 | | Plus |
BO08183.5prime Sequence
908 bp (750 high quality bases) assembled on 2006-01-06
> BO08183.5prime
GAAGTTATCAGTCGACATGGACGACGATGAGCTGATTAAATTGATAGAGA
GACACCCGATCCTGTACGACAAGGACTGCGCGAGGAGCGTGAAGAATGCG
GCGCAAAAGGACGCGGCCTGGAAGGCCATCTCCCAGAAGTTAGGAGCCTC
GGAACGGGCGTGCATTACGCGCTGGAAGAGCATTCGCGATCGTTTCGGCA
AGGAGTTTCGCCGTTTCCAGGAGCGTCCGGATGAGCCCACCTACTGGGAC
ATGTTTCCGCGACTGCTCTTTCTCAAGGATCACTACAAACAGGGACTGGC
AAGGAACGAGAGTCTCGACGGGATGCGTTTTGAGCCCAGGGAGCGGAAAA
AGCGCACAAAAGTGGACATGGAGCAGGAGAGGCGGAGAAAGGACGAGGAG
GAGGAGGACTCCCAGGATGACCTGCTGAACGAGCAGCTCATTGAGCTGGT
CAAGTCTCATCCCGTGCTGTATGATCGTCACAAGATCAGAGTCTCCAAGA
ACCTAGCAGCGAAAAACGAAGCCTGGCGAGAGATTTCTGAAAACCTAAAT
GTGTCGGAGGAACTTTGCTACAACCGCTGGAAGAAGCTGCGTGATCGTTT
CGGGCGGGAGTTCCGCAGTCATCAGATCAACCAGTCCACGCCCATCACGT
GGAGGTACTTTAACGACCTTCTCTTTCTGGGCCGCCACTTCCGCAAAGGA
GTGCCCCTGGTTTTGGAGAACATCAAGCGACGTGGACGACCACCCAAAGC
AGGAAATCCTTCGGGAAAGACCAGCAAACAGCCGGAGGGAATGGTGATCT
CCAGTGGTGAGCAAATCTGGGGCGCTGATTACCCCTACAGTACGGACAAC
GACGATCTGGAGGATGATCTTGAGTTGGCCTACGATGAAGAGATTGAGAT
ACTATCGG
BO08183.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10949-PA | 1380 | CG10949-RA | 1..892 | 17..908 | 4460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:38:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10949-RB | 1689 | CG10949-RB | 215..1106 | 17..908 | 4460 | 100 | Plus |
CG10949-RA | 1539 | CG10949-RA | 65..956 | 17..908 | 4460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:38:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20416164..20416704 | 557..17 | 2705 | 100 | Minus |
2L | 23513712 | 2L | 20415756..20416107 | 908..557 | 1760 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:38:28 has no hits.
BO08183.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:28 Download gff for
BO08183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10949-PA | 1..892 | 17..908 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:31:53 Download gff for
BO08183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10949-PA | 1..892 | 17..908 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:10:58 Download gff for
BO08183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10949-RA | 62..956 | 12..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:04:22 Download gff for
BO08183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10949-RA | 62..956 | 12..908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:04:22 Download gff for
BO08183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20415756..20416106 | 558..908 | 100 | <- | Minus |
2L | 20416164..20416707 | 12..557 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:10:58 Download gff for
BO08183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20415756..20416106 | 558..908 | 100 | <- | Minus |
arm_2L | 20416164..20416707 | 12..557 | 99 | | Minus |
BO08183.complete Sequence
1411 bp (1411 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631093
> BO08183.complete
GAAGTTATCAGTCGACATGGACGACGATGAGCTGATTAAATTGATAGAGA
GACACCCGATCCTGTACGACAAGGACTGCGCGAGGAGCGTGAAGAATGCG
GCGCAAAAGGACGCGGCCTGGAAGGCCATCTCCCAGAAGTTAGGAGCCTC
GGAACGGGCGTGCATTACGCGCTGGAAGAGCATTCGCGATCGTTTCGGCA
AGGAGTTTCGCCGTTTCCAGGAGCGTCCGGATGAGCCCACCTACTGGGAC
ATGTTTCCGCGACTGCTCTTTCTCAAGGATCACTACAAACAGGGACTGGC
AAGGAACGAGAGTCTCGACGGGATGCGTTTTGAGCCCAGGGAGCGGAAAA
AGCGCACAAAAGTGGACATGGAGCAGGAGAGGCGGAGAAAGGACGAGGAG
GAGGAGGACTCCCAGGATGACCTGCTGAACGAGCAGCTCATTGAGCTGGT
CAAGTCTCATCCCGTGCTGTATGATCGTCACAAGATCAGAGTCTCCAAGA
ACCTAGCAGCGAAAAACGAAGCCTGGCGAGAGATTTCTGAAAACCTAAAT
GTGTCGGAGGAACTTTGCTACAACCGCTGGAAGAAGCTGCGTGATCGTTT
CGGGCGGGAGTTCCGCAGTCATCAGATCAACCAGTCCACGCCCATCACGT
GGAGGTACTTTAACGACCTTCTCTTTCTGGGCCGCCACTTCCGCAAAGGA
GTGCCCCTGGTTTTGGAGAACATCAAGCGACGTGGACGACCACCCAAAGC
AGGAAATCCTTCGGGAAAGACCAGCAAACAGCCGGAGGGAATGGTGATCT
CCAGTGGTGAGCAAATCTGGGGCGCTGATTACCCCTACAGTACGGACAAC
GACGATCTGGAGGATGATCTTGAGTTGGCCTACGATGAAGAGATTGAGAT
ACTATCGGAGGCGGAGCAAGCAACGCCGTACGATTTTATCCTCAGCGAAG
CGACGGCACGGCAGGACTTGGAGCCACCACAGCAGCTCCAGGTGACCACC
ACCACGCCGGCCACCAGTGAGGAAATAATTCACACAATCGCCAGGGTAAA
TCCCGTCGTAGAGGAGTCCTCCTCTCTCCCTGGGGACTCTGTACCGTCTG
CCGCCATCTCCGACAAACTGTTGACCACCGTGATTGCCAACATGGAGACC
GTGCTTCAGCAATCCCGGGAGCTGCAGGCCCAGATTCACCACGAACAGGA
GCAGGAGCGAGAACAGCGAAGTACACAGCCTGCCAACAGCCTGCTTGCCA
AGGCTCAGATGCTGCTGGACGGACTGAGTCCGTCTGAGCGGGCAAGTGCC
GAGCGTAAGATCGTGCAGTTCCTGTGCCAGTGCCAAATCAAAGCCCTCGA
TGGCGAGGAGATCGAGGATGTGGCACCTTGTCAGGTCATTAACGCAAGCT
TTCTAGACCAT
BO08183.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:14:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10949-RB | 1380 | CG10949-PB | 1..1377 | 17..1393 | 6885 | 100 | Plus |
CG10949-RA | 1380 | CG10949-PA | 1..1377 | 17..1393 | 6885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:14:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10949-RB | 1689 | CG10949-RB | 215..1591 | 17..1393 | 6885 | 100 | Plus |
CG10949-RA | 1539 | CG10949-RA | 65..1441 | 17..1393 | 6885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:14:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20415271..20416107 | 1393..557 | 4185 | 100 | Minus |
2L | 23513712 | 2L | 20416164..20416704 | 557..17 | 2705 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:14:03 has no hits.
BO08183.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:28 Download gff for
BO08183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10949-RA | 1..1380 | 17..1396 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:33:28 Download gff for
BO08183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10949-RA | 212..1598 | 12..1401 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:16:42 Download gff for
BO08183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10949-RA | 65..1441 | 17..1395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:28 Download gff for
BO08183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10949-RA | 212..1598 | 12..1401 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:16:27 Download gff for
BO08183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10949-RA | 65..1441 | 17..1395 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:16:27 Download gff for
BO08183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20415268..20416106 | 558..1395 | 99 | <- | Minus |
2L | 20416164..20416704 | 17..557 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:16:42 Download gff for
BO08183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20415268..20416106 | 558..1395 | 99 | <- | Minus |
arm_2L | 20416164..20416704 | 17..557 | 100 | | Minus |
BO08183.pep Sequence
Translation from 16 to 1411
> BO08183.pep
MDDDELIKLIERHPILYDKDCARSVKNAAQKDAAWKAISQKLGASERACI
TRWKSIRDRFGKEFRRFQERPDEPTYWDMFPRLLFLKDHYKQGLARNESL
DGMRFEPRERKKRTKVDMEQERRRKDEEEEDSQDDLLNEQLIELVKSHPV
LYDRHKIRVSKNLAAKNEAWREISENLNVSEELCYNRWKKLRDRFGREFR
SHQINQSTPITWRYFNDLLFLGRHFRKGVPLVLENIKRRGRPPKAGNPSG
KTSKQPEGMVISSGEQIWGADYPYSTDNDDLEDDLELAYDEEIEILSEAE
QATPYDFILSEATARQDLEPPQQLQVTTTTPATSEEIIHTIARVNPVVEE
SSSLPGDSVPSAAISDKLLTTVIANMETVLQQSRELQAQIHHEQEQEREQ
RSTQPANSLLAKAQMLLDGLSPSERASAERKIVQFLCQCQIKALDGEEIE
DVAPCQVINASFLDH
BO08183.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10949-PB | 459 | CG10949-PB | 1..459 | 1..459 | 2381 | 100 | Plus |
CG10949-PA | 459 | CG10949-PA | 1..459 | 1..459 | 2381 | 100 | Plus |
Adf1-PC | 262 | CG15845-PC | 9..245 | 129..391 | 173 | 25.7 | Plus |
Adf1-PB | 253 | CG15845-PB | 2..236 | 131..391 | 170 | 25.6 | Plus |
Adf1-PA | 253 | CG15845-PA | 2..236 | 131..391 | 170 | 25.6 | Plus |