Clone Sequence Records
BO08189.3prime Sequence
940 bp (824 high quality bases) assembled on 2006-01-06
> BO08189.3prime
ATGGTCTAGAAAGCTTGCGTACCATGAGGGATAGAACGGCTGTGGCGGCA
TCGTTGTGTAGTTGACCTTCGAGGGCGAAGGAAAGGCGGCGGCATTGAAG
TTCTGGGGCATGAAGTGCGCCGACGAACTGGGCGGCGGATAGTGCGGATG
TGCGCCTGCGTACTGCGGATGCGGATGTGCGTGCGGATGCGGCGCATGGG
GATGTCCGTGATGCGAATGGGCGTGGCCTGGTGCCGGATAGGATGCATAC
TGCGGCGTATGCTGATACGGATGGAACATCTGGTGGGCGGTGACATCCAG
AGCCTGGCTGGTCGAGCTGGTGGAGTTCAGCGAGTCCTCCGGCGAAAGTG
GCGCATTGGGGCGCAGTGCCTGCATGGAGCTCCATCCGCCGTACAACTGC
GACTGACTGGCCGCGATCAGGTCCACCGATTCCACTTTCAGGGCAGCCGA
TAGCTCCTCACTTCCAGCACTGGCATTGGCCAGCGACTGCGAGGGATCGG
CTCCCGAGTTGGCCCCACTGGAGGAGGTCACACCAGCTCCACTCACCACC
GCGGAAAGGCTGTTGGGTGTGGGTGGCAGTTGCCCGAAGGCGGAGGACAC
GGACTCGTTGGGGCTCTCGTTGCGTGGCATAGTCTGGTGGGTTTCCGTTT
CGGTGCCGTAAACTGAACCCAACTGAGTCTCATAGCTGGAGACGATGATG
TTCCCGGTGGGTGTGGTGTTGCCATTCTCACCCGGCATTATGTAGCTGGC
TGTGTTAGCGCTGGGATTGTAGAACTGATGGTGGTGCGGTGGCGTGGTTG
TAATTCCGGGCGATAGATTACTACTGGCCATTGGAGCTGCGGCGGATACG
GAAATGTTGGCGTGACTGCCGTAGAAATCGTATTGCTGCTGGTACACAGT
GGCTGGATCCAGGGATCCCGGCATCATGGGCAGCGGAGCC
BO08189.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6716-PA | 1773 | prd-RA | 849..1770 | 940..19 | 4585 | 99.8 | Minus |
CG6716-PB | 1842 | prd-RB | 918..1839 | 940..19 | 4585 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:58:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
prd-RB | 2459 | CG6716-RB | 1216..2137 | 940..19 | 4595 | 99.9 | Minus |
prd-RA | 2330 | CG6716-RA | 1087..2008 | 940..19 | 4595 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:58:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12083317..12084238 | 19..940 | 4595 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:58:52 has no hits.
BO08189.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:32 Download gff for
BO08189.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6716-PB | 918..1842 | 18..940 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:32:00 Download gff for
BO08189.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6716-PB | 918..1842 | 18..940 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:12:48 Download gff for
BO08189.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
prd-RA | 1087..2008 | 19..940 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:33:16 Download gff for
BO08189.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
prd-RA | 1087..2008 | 19..940 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:33:16 Download gff for
BO08189.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12083317..12084238 | 19..940 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:12:48 Download gff for
BO08189.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12083317..12084238 | 19..940 | 99 | | Plus |
BO08189.5prime Sequence
894 bp (789 high quality bases) assembled on 2006-01-06
> BO08189.5prime
GAAGTTATCAGTCGACATGAACAGCGGCCAGGGGCGCGTCAATCAACTAG
GTGGAGTTTTCATCAACGGTCGTCCTTTGCCCAACAATATTCGTCTTAAA
ATCGTCGAGATGGCCGCCGATGGCATTCGGCCCTGTGTGATCTCCAGACA
GCTACGTGTGTCCCATGGCTGCGTATCGAAGATCCTGAATCGCTACCAGG
AGACTGGCTCCATTAGACCAGGCGTAATTGGTGGCTCCAAGCCGAGGATA
GCCACGCCCGAAATCGAGAACCGAATTGAGGAGTACAAGCGCAGTAGCCC
GGGCATGTTCTCGTGGGAGATCAGGGAGAAGCTGATCCGCGAGGGTGTCT
GCGACAGGAGCACAGCACCATCTGTGTCCGCCATATCGCGCCTGGTGCGC
GGCCGAGATGCTCCATTGGACAATGATATGTCTTCTGCCTCTGGATCTCC
GGCGGGTGATGGCACCAAAGCATCGAGTTCCTGCGGCTCCGATGTCTCAG
GTGGCCATCACAACAACGGCAAGCCCTCCGATGAGGACATCTCTGACTGT
GAAAGTGAGCCGGGAATCGCCTTGAAGCGCAAACAGCGCCGCTGCAGGAC
CACCTTTTCCGCTTCCCAGTTGGACGAACTGGAACGCGCCTTCGAGCGCA
CCCAATACCCTGATATCTACACCCGTGAGGAGCTGGCCCAGCGCACCAAT
CTCACGGAGGCACGCATTCAGGTGTGGTTCAGCAATCGGCGTGCTCGTCT
CCGCAAGCAGCACACCTCGGTCTCGGGCGGAGCACCTGGCGGAGCAGCTG
CCTCAGTGAGCCATGTCGCCGCGTCCAGCTCTTTGCCCAGTGTGGTATCA
AGTGTGCCCAGCATGGCTCCGCTGGCCATGATGCCGGGATCCCT
BO08189.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6716-PB | 1842 | prd-RB | 67..947 | 14..894 | 4405 | 100 | Plus |
CG6716-PA | 1773 | prd-RA | 1..878 | 17..894 | 4390 | 100 | Plus |
CG2692-PA | 1350 | gsb-n-RA | 199..266 | 167..234 | 140 | 88.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:39:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
prd-RB | 2459 | CG6716-RB | 365..1245 | 14..894 | 4405 | 100 | Plus |
prd-RA | 2330 | CG6716-RA | 237..1116 | 15..894 | 4400 | 100 | Plus |
gsb-RA | 1649 | CG3388-RA | 263..495 | 50..282 | 415 | 78.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:38:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12084209..12085089 | 894..14 | 4405 | 100 | Minus |
2R | 25286936 | 2R | 25063257..25063489 | 50..282 | 415 | 78.5 | Plus |
2R | 25286936 | 2R | 25051407..25051609 | 243..41 | 370 | 78.8 | Minus |
2R | 25286936 | 2R | 25041692..25041878 | 759..573 | 185 | 73.3 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:39:00 has no hits.
BO08189.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:33 Download gff for
BO08189.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6716-PB | 64..947 | 9..894 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:32:01 Download gff for
BO08189.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6716-PB | 64..947 | 9..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:11:00 Download gff for
BO08189.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
prd-RB | 362..1245 | 9..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:40:25 Download gff for
BO08189.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
prd-RB | 362..1245 | 9..894 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:40:25 Download gff for
BO08189.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12084209..12085097 | 8..894 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:11:00 Download gff for
BO08189.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12084209..12085097 | 8..894 | 99 | | Minus |
BO08189.complete Sequence
1804 bp (1804 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631094
> BO08189.complete
GAAGTTATCAGTCGACATGAACAGCGGCCAGGGGCGCGTCAATCAACTAG
GTGGAGTTTTCATCAACGGTCGTCCTTTGCCCAACAATATTCGTCTTAAA
ATCGTCGAGATGGCCGCCGATGGCATTCGGCCCTGTGTGATCTCCAGACA
GCTACGTGTGTCCCATGGCTGCGTATCGAAGATCCTGAATCGCTACCAGG
AGACTGGCTCCATTAGACCAGGCGTAATTGGTGGCTCCAAGCCGAGGATA
GCCACGCCCGAAATCGAGAACCGAATTGAGGAGTACAAGCGCAGTAGCCC
GGGCATGTTCTCGTGGGAGATCAGGGAGAAGCTGATCCGCGAGGGTGTCT
GCGACAGGAGCACAGCACCATCTGTGTCCGCCATATCGCGCCTGGTGCGC
GGCCGAGATGCTCCATTGGACAATGATATGTCTTCTGCCTCTGGATCTCC
GGCGGGTGATGGCACCAAAGCATCGAGTTCCTGCGGCTCCGATGTCTCAG
GTGGCCATCACAACAACGGCAAGCCCTCCGATGAGGACATCTCTGACTGT
GAAAGTGAGCCGGGAATCGCCTTGAAGCGCAAACAGCGCCGCTGCAGGAC
CACCTTTTCCGCTTCCCAGTTGGACGAACTGGAACGCGCCTTCGAGCGCA
CCCAATACCCTGATATCTACACCCGTGAGGAGCTGGCCCAGCGCACCAAT
CTCACGGAGGCACGCATTCAGGTGTGGTTCAGCAATCGGCGTGCTCGTCT
CCGCAAGCAGCACACCTCGGTCTCGGGCGGAGCACCTGGCGGAGCAGCTG
CCTCAGTGAGCCATGTCGCCGCGTCCAGCTCTTTGCCCAGTGTGGTATCA
AGTGTGCCCAGCATGGCTCCGCTGGCCATGATGCCGGGATCCCTGGATCC
AGCCACTGTGTACCAGCAGCAATACGATTTCTACGGCAGTCACGCCAACA
TTTCCGTATCCGCCGCAGCTCCAATGGCCAGTAGTAATCTATCGCCCGGA
ATTACAACCACGCCACCGCACCACCATCAGTTCTACAATCCCAGCGCTAA
CACAGCCAGCTACATAATGCCGGGTGAGAATGGCAACACCACACCCACCG
GGAACATCATCGTCTCCAGCTATGAGACTCAGTTGGGTTCAGTTTACGGC
ACCGAAACGGAAACCCACCAGACTATGCCACGCAACGAGAGCCCCAACGA
GTCCGTGTCCTCCGCCTTCGGGCAACTGCCACCCACACCCAACAGCCTTT
CCGCGGTGGTGAGTGGAGCTGGTGTGACCTCCTCCAGTGGGGCCAACTCG
GGAGCCGATCCCTCGCAGTCGCTGGCCAATGCCAGTGCTGGAAGTGAGGA
GCTATCGGCTGCCCTGAAAGTGGAATCGGTGGACCTGATCGCGGCCAGTC
AGTCGCAGTTGTACGGCGGATGGAGCTCCATGCAGGCACTGCGCCCCAAT
GCGCCACTTTCGCCGGAGGACTCGCTGAACTCCACCAGCTCGACCAGCCA
GGCTCTGGATGTCACCGCCCACCAGATGTTCCATCCGTATCAGCATACGC
CGCAGTATGCATCCTATCCGGCACCAGGCCACGCCCATTCGCATCACGGA
CATCCCCATGCGCCGCATCCGCACGCACATCCGCATCCGCAGTACGCAGG
CGCACATCCGCACTATCCGCCGCCCAGTTCGTCGGCGCACTTCATGCCCC
AGAACTTCAATGCCGCCGCCTTTCCTTCGCCCTCGAAGGTCAACTACACA
ACGATGCCGCCACAGCCGTTCTATCCCTCATGGTACGCAAGCTTTCTAGA
CCAT
BO08189.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:44:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
prd-RB | 1842 | CG6716-PB | 67..1839 | 14..1786 | 8865 | 100 | Plus |
prd-RA | 1773 | CG6716-PA | 1..1770 | 17..1786 | 8850 | 100 | Plus |
gsb-RA | 1284 | CG3388-PA | 79..311 | 50..282 | 415 | 78.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:44:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
prd-RB | 2459 | CG6716-RB | 365..2137 | 14..1786 | 8865 | 100 | Plus |
prd-RA | 2330 | CG6716-RA | 237..2008 | 15..1786 | 8860 | 100 | Plus |
gsb-RA | 1649 | CG3388-RA | 263..495 | 50..282 | 415 | 78.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:44:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12083317..12085089 | 1786..14 | 8865 | 100 | Minus |
2R | 25286936 | 2R | 25063257..25063489 | 50..282 | 415 | 78.5 | Plus |
2R | 25286936 | 2R | 25051407..25051609 | 243..41 | 370 | 78.8 | Minus |
2R | 25286936 | 2R | 25041692..25041878 | 759..573 | 185 | 73.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:44:18 has no hits.
BO08189.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:12 Download gff for
BO08189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
prd-RB | 64..1842 | 9..1787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:19:40 Download gff for
BO08189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
prd-RB | 327..2102 | 9..1786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:36:43 Download gff for
BO08189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
prd-RB | 368..2137 | 17..1788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:12 Download gff for
BO08189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
prd-RB | 327..2102 | 9..1786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:11 Download gff for
BO08189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
prd-RB | 368..2137 | 17..1788 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:11 Download gff for
BO08189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12083315..12085086 | 17..1788 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:36:43 Download gff for
BO08189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12083315..12085086 | 17..1788 | 99 | | Minus |
BO08189.pep Sequence
Translation from 16 to 1804
> BO08189.pep
MNSGQGRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRVSH
GCVSKILNRYQETGSIRPGVIGGSKPRIATPEIENRIEEYKRSSPGMFSW
EIREKLIREGVCDRSTAPSVSAISRLVRGRDAPLDNDMSSASGSPAGDGT
KASSSCGSDVSGGHHNNGKPSDEDISDCESEPGIALKRKQRRCRTTFSAS
QLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFSNRRARLRKQHT
SVSGGAPGGAAASVSHVAASSSLPSVVSSVPSMAPLAMMPGSLDPATVYQ
QQYDFYGSHANISVSAAAPMASSNLSPGITTTPPHHHQFYNPSANTASYI
MPGENGNTTPTGNIIVSSYETQLGSVYGTETETHQTMPRNESPNESVSSA
FGQLPPTPNSLSAVVSGAGVTSSSGANSGADPSQSLANASAGSEELSAAL
KVESVDLIAASQSQLYGGWSSMQALRPNAPLSPEDSLNSTSSTSQALDVT
AHQMFHPYQHTPQYASYPAPGHAHSHHGHPHAPHPHAHPHPQYAGAHPHY
PPPSSSAHFMPQNFNAAAFPSPSKVNYTTMPPQPFYPSWYASFLDH
BO08189.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:15:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
prd-PB | 613 | CG6716-PB | 24..613 | 1..590 | 3103 | 100 | Plus |
prd-PA | 590 | CG6716-PA | 1..590 | 1..590 | 3103 | 100 | Plus |
gsb-n-PA | 449 | CG2692-PA | 20..324 | 4..337 | 850 | 58 | Plus |
gsb-PA | 427 | CG3388-PA | 19..313 | 4..323 | 847 | 57.5 | Plus |
Poxm-PC | 370 | CG9610-PC | 11..177 | 6..176 | 493 | 57.3 | Plus |