Clone BO08189 Report

Search the DGRC for BO08189

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:81
Well:89
Vector:pDNR-Dual
Associated Gene/Transcriptprd-RA
Protein status:BO08189.pep: full length peptide match
Sequenced Size:1804

Clone Sequence Records

BO08189.3prime Sequence

940 bp (824 high quality bases) assembled on 2006-01-06

> BO08189.3prime
ATGGTCTAGAAAGCTTGCGTACCATGAGGGATAGAACGGCTGTGGCGGCA
TCGTTGTGTAGTTGACCTTCGAGGGCGAAGGAAAGGCGGCGGCATTGAAG
TTCTGGGGCATGAAGTGCGCCGACGAACTGGGCGGCGGATAGTGCGGATG
TGCGCCTGCGTACTGCGGATGCGGATGTGCGTGCGGATGCGGCGCATGGG
GATGTCCGTGATGCGAATGGGCGTGGCCTGGTGCCGGATAGGATGCATAC
TGCGGCGTATGCTGATACGGATGGAACATCTGGTGGGCGGTGACATCCAG
AGCCTGGCTGGTCGAGCTGGTGGAGTTCAGCGAGTCCTCCGGCGAAAGTG
GCGCATTGGGGCGCAGTGCCTGCATGGAGCTCCATCCGCCGTACAACTGC
GACTGACTGGCCGCGATCAGGTCCACCGATTCCACTTTCAGGGCAGCCGA
TAGCTCCTCACTTCCAGCACTGGCATTGGCCAGCGACTGCGAGGGATCGG
CTCCCGAGTTGGCCCCACTGGAGGAGGTCACACCAGCTCCACTCACCACC
GCGGAAAGGCTGTTGGGTGTGGGTGGCAGTTGCCCGAAGGCGGAGGACAC
GGACTCGTTGGGGCTCTCGTTGCGTGGCATAGTCTGGTGGGTTTCCGTTT
CGGTGCCGTAAACTGAACCCAACTGAGTCTCATAGCTGGAGACGATGATG
TTCCCGGTGGGTGTGGTGTTGCCATTCTCACCCGGCATTATGTAGCTGGC
TGTGTTAGCGCTGGGATTGTAGAACTGATGGTGGTGCGGTGGCGTGGTTG
TAATTCCGGGCGATAGATTACTACTGGCCATTGGAGCTGCGGCGGATACG
GAAATGTTGGCGTGACTGCCGTAGAAATCGTATTGCTGCTGGTACACAGT
GGCTGGATCCAGGGATCCCGGCATCATGGGCAGCGGAGCC

BO08189.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG6716-PA 1773 prd-RA 849..1770 940..19 4585 99.8 Minus
CG6716-PB 1842 prd-RB 918..1839 940..19 4585 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:58:54
Subject Length Description Subject Range Query Range Score Percent Strand
prd-RB 2459 CG6716-RB 1216..2137 940..19 4595 99.9 Minus
prd-RA 2330 CG6716-RA 1087..2008 940..19 4595 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:58:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12083317..12084238 19..940 4595 99.9 Plus
Blast to na_te.dros performed on 2015-02-10 17:58:52 has no hits.

BO08189.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:32 Download gff for BO08189.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6716-PB 918..1842 18..940 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:32:00 Download gff for BO08189.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6716-PB 918..1842 18..940 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:12:48 Download gff for BO08189.3prime
Subject Subject Range Query Range Percent Splice Strand
prd-RA 1087..2008 19..940 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:33:16 Download gff for BO08189.3prime
Subject Subject Range Query Range Percent Splice Strand
prd-RA 1087..2008 19..940 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:33:16 Download gff for BO08189.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 12083317..12084238 19..940 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:12:48 Download gff for BO08189.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12083317..12084238 19..940 99   Plus

BO08189.5prime Sequence

894 bp (789 high quality bases) assembled on 2006-01-06

> BO08189.5prime
GAAGTTATCAGTCGACATGAACAGCGGCCAGGGGCGCGTCAATCAACTAG
GTGGAGTTTTCATCAACGGTCGTCCTTTGCCCAACAATATTCGTCTTAAA
ATCGTCGAGATGGCCGCCGATGGCATTCGGCCCTGTGTGATCTCCAGACA
GCTACGTGTGTCCCATGGCTGCGTATCGAAGATCCTGAATCGCTACCAGG
AGACTGGCTCCATTAGACCAGGCGTAATTGGTGGCTCCAAGCCGAGGATA
GCCACGCCCGAAATCGAGAACCGAATTGAGGAGTACAAGCGCAGTAGCCC
GGGCATGTTCTCGTGGGAGATCAGGGAGAAGCTGATCCGCGAGGGTGTCT
GCGACAGGAGCACAGCACCATCTGTGTCCGCCATATCGCGCCTGGTGCGC
GGCCGAGATGCTCCATTGGACAATGATATGTCTTCTGCCTCTGGATCTCC
GGCGGGTGATGGCACCAAAGCATCGAGTTCCTGCGGCTCCGATGTCTCAG
GTGGCCATCACAACAACGGCAAGCCCTCCGATGAGGACATCTCTGACTGT
GAAAGTGAGCCGGGAATCGCCTTGAAGCGCAAACAGCGCCGCTGCAGGAC
CACCTTTTCCGCTTCCCAGTTGGACGAACTGGAACGCGCCTTCGAGCGCA
CCCAATACCCTGATATCTACACCCGTGAGGAGCTGGCCCAGCGCACCAAT
CTCACGGAGGCACGCATTCAGGTGTGGTTCAGCAATCGGCGTGCTCGTCT
CCGCAAGCAGCACACCTCGGTCTCGGGCGGAGCACCTGGCGGAGCAGCTG
CCTCAGTGAGCCATGTCGCCGCGTCCAGCTCTTTGCCCAGTGTGGTATCA
AGTGTGCCCAGCATGGCTCCGCTGGCCATGATGCCGGGATCCCT

BO08189.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6716-PB 1842 prd-RB 67..947 14..894 4405 100 Plus
CG6716-PA 1773 prd-RA 1..878 17..894 4390 100 Plus
CG2692-PA 1350 gsb-n-RA 199..266 167..234 140 88.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
prd-RB 2459 CG6716-RB 365..1245 14..894 4405 100 Plus
prd-RA 2330 CG6716-RA 237..1116 15..894 4400 100 Plus
gsb-RA 1649 CG3388-RA 263..495 50..282 415 78.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:38:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12084209..12085089 894..14 4405 100 Minus
2R 25286936 2R 25063257..25063489 50..282 415 78.5 Plus
2R 25286936 2R 25051407..25051609 243..41 370 78.8 Minus
2R 25286936 2R 25041692..25041878 759..573 185 73.3 Minus
Blast to na_te.dros performed on 2015-02-13 13:39:00 has no hits.

BO08189.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:33 Download gff for BO08189.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6716-PB 64..947 9..894 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:32:01 Download gff for BO08189.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6716-PB 64..947 9..894 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:11:00 Download gff for BO08189.5prime
Subject Subject Range Query Range Percent Splice Strand
prd-RB 362..1245 9..894 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:40:25 Download gff for BO08189.5prime
Subject Subject Range Query Range Percent Splice Strand
prd-RB 362..1245 9..894 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:40:25 Download gff for BO08189.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 12084209..12085097 8..894 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:11:00 Download gff for BO08189.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12084209..12085097 8..894 99   Minus

BO08189.complete Sequence

1804 bp (1804 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631094

> BO08189.complete
GAAGTTATCAGTCGACATGAACAGCGGCCAGGGGCGCGTCAATCAACTAG
GTGGAGTTTTCATCAACGGTCGTCCTTTGCCCAACAATATTCGTCTTAAA
ATCGTCGAGATGGCCGCCGATGGCATTCGGCCCTGTGTGATCTCCAGACA
GCTACGTGTGTCCCATGGCTGCGTATCGAAGATCCTGAATCGCTACCAGG
AGACTGGCTCCATTAGACCAGGCGTAATTGGTGGCTCCAAGCCGAGGATA
GCCACGCCCGAAATCGAGAACCGAATTGAGGAGTACAAGCGCAGTAGCCC
GGGCATGTTCTCGTGGGAGATCAGGGAGAAGCTGATCCGCGAGGGTGTCT
GCGACAGGAGCACAGCACCATCTGTGTCCGCCATATCGCGCCTGGTGCGC
GGCCGAGATGCTCCATTGGACAATGATATGTCTTCTGCCTCTGGATCTCC
GGCGGGTGATGGCACCAAAGCATCGAGTTCCTGCGGCTCCGATGTCTCAG
GTGGCCATCACAACAACGGCAAGCCCTCCGATGAGGACATCTCTGACTGT
GAAAGTGAGCCGGGAATCGCCTTGAAGCGCAAACAGCGCCGCTGCAGGAC
CACCTTTTCCGCTTCCCAGTTGGACGAACTGGAACGCGCCTTCGAGCGCA
CCCAATACCCTGATATCTACACCCGTGAGGAGCTGGCCCAGCGCACCAAT
CTCACGGAGGCACGCATTCAGGTGTGGTTCAGCAATCGGCGTGCTCGTCT
CCGCAAGCAGCACACCTCGGTCTCGGGCGGAGCACCTGGCGGAGCAGCTG
CCTCAGTGAGCCATGTCGCCGCGTCCAGCTCTTTGCCCAGTGTGGTATCA
AGTGTGCCCAGCATGGCTCCGCTGGCCATGATGCCGGGATCCCTGGATCC
AGCCACTGTGTACCAGCAGCAATACGATTTCTACGGCAGTCACGCCAACA
TTTCCGTATCCGCCGCAGCTCCAATGGCCAGTAGTAATCTATCGCCCGGA
ATTACAACCACGCCACCGCACCACCATCAGTTCTACAATCCCAGCGCTAA
CACAGCCAGCTACATAATGCCGGGTGAGAATGGCAACACCACACCCACCG
GGAACATCATCGTCTCCAGCTATGAGACTCAGTTGGGTTCAGTTTACGGC
ACCGAAACGGAAACCCACCAGACTATGCCACGCAACGAGAGCCCCAACGA
GTCCGTGTCCTCCGCCTTCGGGCAACTGCCACCCACACCCAACAGCCTTT
CCGCGGTGGTGAGTGGAGCTGGTGTGACCTCCTCCAGTGGGGCCAACTCG
GGAGCCGATCCCTCGCAGTCGCTGGCCAATGCCAGTGCTGGAAGTGAGGA
GCTATCGGCTGCCCTGAAAGTGGAATCGGTGGACCTGATCGCGGCCAGTC
AGTCGCAGTTGTACGGCGGATGGAGCTCCATGCAGGCACTGCGCCCCAAT
GCGCCACTTTCGCCGGAGGACTCGCTGAACTCCACCAGCTCGACCAGCCA
GGCTCTGGATGTCACCGCCCACCAGATGTTCCATCCGTATCAGCATACGC
CGCAGTATGCATCCTATCCGGCACCAGGCCACGCCCATTCGCATCACGGA
CATCCCCATGCGCCGCATCCGCACGCACATCCGCATCCGCAGTACGCAGG
CGCACATCCGCACTATCCGCCGCCCAGTTCGTCGGCGCACTTCATGCCCC
AGAACTTCAATGCCGCCGCCTTTCCTTCGCCCTCGAAGGTCAACTACACA
ACGATGCCGCCACAGCCGTTCTATCCCTCATGGTACGCAAGCTTTCTAGA
CCAT

BO08189.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:44:19
Subject Length Description Subject Range Query Range Score Percent Strand
prd-RB 1842 CG6716-PB 67..1839 14..1786 8865 100 Plus
prd-RA 1773 CG6716-PA 1..1770 17..1786 8850 100 Plus
gsb-RA 1284 CG3388-PA 79..311 50..282 415 78.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:44:21
Subject Length Description Subject Range Query Range Score Percent Strand
prd-RB 2459 CG6716-RB 365..2137 14..1786 8865 100 Plus
prd-RA 2330 CG6716-RA 237..2008 15..1786 8860 100 Plus
gsb-RA 1649 CG3388-RA 263..495 50..282 415 78.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:44:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12083317..12085089 1786..14 8865 100 Minus
2R 25286936 2R 25063257..25063489 50..282 415 78.5 Plus
2R 25286936 2R 25051407..25051609 243..41 370 78.8 Minus
2R 25286936 2R 25041692..25041878 759..573 185 73.3 Minus
Blast to na_te.dros performed on 2014-11-27 23:44:18 has no hits.

BO08189.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:12 Download gff for BO08189.complete
Subject Subject Range Query Range Percent Splice Strand
prd-RB 64..1842 9..1787 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:19:40 Download gff for BO08189.complete
Subject Subject Range Query Range Percent Splice Strand
prd-RB 327..2102 9..1786 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:36:43 Download gff for BO08189.complete
Subject Subject Range Query Range Percent Splice Strand
prd-RB 368..2137 17..1788 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:12 Download gff for BO08189.complete
Subject Subject Range Query Range Percent Splice Strand
prd-RB 327..2102 9..1786 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:11 Download gff for BO08189.complete
Subject Subject Range Query Range Percent Splice Strand
prd-RB 368..2137 17..1788 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:11 Download gff for BO08189.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12083315..12085086 17..1788 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:36:43 Download gff for BO08189.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12083315..12085086 17..1788 99   Minus

BO08189.pep Sequence

Translation from 16 to 1804

> BO08189.pep
MNSGQGRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRVSH
GCVSKILNRYQETGSIRPGVIGGSKPRIATPEIENRIEEYKRSSPGMFSW
EIREKLIREGVCDRSTAPSVSAISRLVRGRDAPLDNDMSSASGSPAGDGT
KASSSCGSDVSGGHHNNGKPSDEDISDCESEPGIALKRKQRRCRTTFSAS
QLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFSNRRARLRKQHT
SVSGGAPGGAAASVSHVAASSSLPSVVSSVPSMAPLAMMPGSLDPATVYQ
QQYDFYGSHANISVSAAAPMASSNLSPGITTTPPHHHQFYNPSANTASYI
MPGENGNTTPTGNIIVSSYETQLGSVYGTETETHQTMPRNESPNESVSSA
FGQLPPTPNSLSAVVSGAGVTSSSGANSGADPSQSLANASAGSEELSAAL
KVESVDLIAASQSQLYGGWSSMQALRPNAPLSPEDSLNSTSSTSQALDVT
AHQMFHPYQHTPQYASYPAPGHAHSHHGHPHAPHPHAHPHPQYAGAHPHY
PPPSSSAHFMPQNFNAAAFPSPSKVNYTTMPPQPFYPSWYASFLDH

BO08189.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:15:58
Subject Length Description Subject Range Query Range Score Percent Strand
prd-PB 613 CG6716-PB 24..613 1..590 3103 100 Plus
prd-PA 590 CG6716-PA 1..590 1..590 3103 100 Plus
gsb-n-PA 449 CG2692-PA 20..324 4..337 850 58 Plus
gsb-PA 427 CG3388-PA 19..313 4..323 847 57.5 Plus
Poxm-PC 370 CG9610-PC 11..177 6..176 493 57.3 Plus