Clone Sequence Records
BO08190.3prime Sequence
886 bp (775 high quality bases) assembled on 2006-01-06
> BO08190.3prime
ATGGTCTAGAAAGCTTGCCACAGATGACGTCACATTTTGGCCGCTATCGA
TCGTCAGGCTAGATGCACGCATACTTAGAGATGCCAATGATAAGTTGCTG
TGGTAAATGACTTTGGGAGATAGGAGAGCGCTGTTTTCGGTATCTAGAGC
TGGATTCTTAACGTAGCAAAACGCAGCCGAAGGTAAAAGGATGTCGGAGT
TTATCCCTAGGAGGCCGTCGACCGACAAAGAATTCGTATTGAAGGTGGAA
GCAGCTGTGACGCACCTGTCGGTGCTTTCACTTTCAACCGGAACGCTGCC
GCAGAAATGTGTGCGTGAGCTGATCAGCTTGTTGCAGGCGGGGCATGATC
GCGGGGCATTTTTCTCCCGCCGTCGCAAGATTTCATAGGCGCATCTTGCA
TGAAGAATGTGTGCACAGGGTAGAGCTTCCAAGTTTTCTGGACGAAGTCC
AAGCAACTCCCCACACGCTCCGCAATTTAAGCCTAACGCAGCATCCGTCT
GATTAGCTAGTCTAAAATGAGTGTTGTATTGATCTTCGTCTCCTAGTGCC
CGGTAGATCAATGCCAGTCGGCAACGAATTTTGCGAACCAGAAACTTGGC
TCCAATTGAGCTGGCAACTTCCAGAAGTCTTGTGTTAAATTCTAGTGGTC
TGCAGTTGCAGATCTTGTTCTGTAGACGGAGTGTTTCCAAGCAACGAGCT
GCTCCATCCATAGCCTCCATTTGGGCCATACGATCCCCTAAGCTTGCCGA
TGTACCCATAGCTTGTTCATATTGCCGGAATGCACGATCCATGTCCATTT
TATTTCGGTATATGTCGCCCATGACGCGAATACTTCTCGTGTAAGTCGCC
TGGTCTCCAGAAATAAGGGAAAGCTTCGTGGCCTCC
BO08190.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1909-PA | 1821 | CG1909-RA | 951..1818 | 886..19 | 4340 | 100 | Minus |
CG1909-PB | 1821 | CG1909-RB | 951..1818 | 886..19 | 4340 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:36:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1909-RB | 2374 | CG1909-RB | 1106..1973 | 886..19 | 4340 | 100 | Minus |
CG1909-RA | 2401 | CG1909-RA | 1133..2000 | 886..19 | 4340 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:36:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 588570..588947 | 396..19 | 1890 | 100 | Minus |
4 | 1348131 | 4 | 587841..588042 | 596..395 | 1010 | 100 | Minus |
4 | 1348131 | 4 | 586902..587093 | 786..595 | 960 | 100 | Minus |
4 | 1348131 | 4 | 585839..585938 | 886..787 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:36:39 has no hits.
BO08190.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:34 Download gff for
BO08190.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1909-PB | 951..1821 | 16..886 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:32:02 Download gff for
BO08190.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1909-PB | 951..1821 | 16..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:14:07 Download gff for
BO08190.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1909-RA | 1133..2006 | 14..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 19:24:50 Download gff for
BO08190.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1909-RA | 1133..2006 | 14..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 19:24:50 Download gff for
BO08190.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 586902..587093 | 595..786 | 100 | -> | Minus |
4 | 587843..588042 | 395..594 | 100 | -> | Minus |
4 | 585839..585938 | 787..886 | 100 | -> | Minus |
4 | 588572..588946 | 20..394 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:14:07 Download gff for
BO08190.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 606465..606564 | 787..886 | 100 | -> | Minus |
arm_4 | 607528..607719 | 595..786 | 100 | -> | Minus |
arm_4 | 608469..608668 | 395..594 | 100 | -> | Minus |
arm_4 | 609198..609572 | 20..394 | 100 | -> | Minus |
BO08190.5prime Sequence
950 bp (803 high quality bases) assembled on 2006-01-06
> BO08190.5prime
GAAGTTATCAGTCGACATGTCATGGGAGAGCATTAACTCCAAGGATCTCC
TTAGCATCCCACCAAGCCAGAATCTGTCTGCAACACGTTTACTTACATCA
CCTGATGGATCTCGTTACCTATTGGAAAATTCAAGCGACTTGTGTCACTT
AGATGAGAGTTTTTCGCGGTTGGCGGGATATGGATCTAGTCCAGATGTAG
GATCCCGTTCGGTATGGGCTAGCCAGGCGCTATTACGATCAGGTTCTGTT
ATCAGTTGCTTTTTGTCCTGCCAGCAAAGCCTAAGACAGTACATAGCTAA
ACGGAAGATCGAGCGAGGACGACGGCTATATGAACAAAACAATCAAACGG
AGGCCGTACGTACTTGGCGTAGTGCACTGAAAGGGACGTGCCAAAGAGAG
GACTGCTTTCAGCTACTAGGATATTTGTATCAGGCACATATGGACTGGGG
AAAATTTCGTGAGGCAATAGAATTCAGTCATCAGCAGCTCGGAATTTCAG
AGGAGCTTGATTCGCCAAATATGAGAGCCGAGACGTACTTAAATCTCAGC
AGGGCACACGCCAGCTTGGGAGGCTTAGAGCGATCACTGAGTTATGCCAG
GCACTCACTTTACAATGAGTGCGGCACTAAATGCAGAAGTGGACTTGTCC
ATTTGACGGTTGCACGTGTATACCTAGAAATGGGTGGGTTCTCTAGGGCT
TTGGAGGGTTTGCAGGGTGCCTACAAAATTGCTACAGCTATTGGAGATCC
ATCACTGGAGTTACAAGTGTATGTCGCGCTTTCTGAGCTTTTCGGACGCC
TTCAGGATAACGATAAAAGTGCAACATACGCTTCTAAAGCCTACGACTTA
TCACGATCCCTGCAACTCGGTGACCTAAACTCATGCCACCATAGAGCAGC
TCTATTGCGAATGGCGGTTTCTCTCCGAAAGCAGGGTGAGCTTGGAGATG
BO08190.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1909-PA | 1821 | CG1909-RA | 1..934 | 17..950 | 4670 | 100 | Plus |
CG1909-PB | 1821 | CG1909-RB | 1..934 | 17..950 | 4670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:08:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1909-RB | 2374 | CG1909-RB | 155..1089 | 16..950 | 4675 | 100 | Plus |
CG1909-RA | 2401 | CG1909-RA | 182..1116 | 16..950 | 4675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:08:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 585297..585755 | 492..950 | 2295 | 100 | Plus |
4 | 1348131 | 4 | 584988..585174 | 306..492 | 935 | 100 | Plus |
4 | 1348131 | 4 | 584761..584931 | 137..307 | 855 | 100 | Plus |
4 | 1348131 | 4 | 583933..584018 | 52..137 | 430 | 100 | Plus |
4 | 1348131 | 4 | 583825..583863 | 16..54 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:08:47 has no hits.
BO08190.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:35 Download gff for
BO08190.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1909-PB | 1..934 | 17..950 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:32:03 Download gff for
BO08190.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1909-PB | 1..934 | 17..950 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:47:44 Download gff for
BO08190.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1909-RA | 174..1116 | 9..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:45:51 Download gff for
BO08190.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1909-RA | 174..1116 | 9..950 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:45:51 Download gff for
BO08190.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 584762..584931 | 138..307 | 100 | -> | Plus |
4 | 584990..585174 | 308..492 | 100 | -> | Plus |
4 | 583817..583863 | 9..54 | 93 | -> | Plus |
4 | 583936..584018 | 55..137 | 100 | -> | Plus |
4 | 585298..585755 | 493..950 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:47:44 Download gff for
BO08190.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 605616..605800 | 308..492 | 100 | -> | Plus |
arm_4 | 604443..604489 | 9..54 | 93 | -> | Plus |
arm_4 | 604562..604644 | 55..137 | 100 | -> | Plus |
arm_4 | 605388..605557 | 138..307 | 100 | -> | Plus |
arm_4 | 605924..606381 | 493..950 | 100 | | Plus |
BO08190.complete Sequence
1852 bp (1852 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631095
> BO08190.complete
GAAGTTATCAGTCGACATGTCATGGGAGAGCATTAACTCCAAGGATCTCC
TTAGCATCCCACCAAGCCAGAATCTGTCTGCAACACGTTTACTTACATCA
CCTGATGGATCTCGTTACCTATTGGAAAATTCAAGCGACTTGTGTCACTT
AGATGAGAGTTTTTCGCGGTTGGCGGGATATGGATCTAGTCCAGATGTAG
GATCCCGTTCGGTATGGGCTAGCCAGGCGCTATTACGATCAGGTTCTGTT
ATCAGTTGCTTTTTGTCCTGCCAGCAAAGCCTAAGACAGTACATAGCTAA
ACGGAAGATCGAGCGAGGACGACGGCTATATGAACAAAACAATCAAACGG
AGGCCGTACGTACTTGGCGTAGTGCACTGAAAGGGACGTGCCAAAGAGAG
GACTGCTTTCAGCTACTAGGATATTTGTATCAGGCACATATGGACTGGGG
AAAATTTCGTGAGGCAATAGAATTCAGTCATCAGCAGCTCGGAATTTCAG
AGGAGCTTGATTCGCCAAATATGAGAGCCGAGACGTACTTAAATCTCAGC
AGGGCACACGCCAGCTTGGGAGGCTTAGAGCGATCACTGAGTTATGCCAG
GCACTCACTTTACAATGAGTGCGGCACTAAATGCAGAAGTGGACTTGTCC
ATTTGACGGTTGCACGTGTATACCTAGAAATGGGTGGGTTCTCTAGGGCT
TTGGAGGGTTTGCAGGGTGCCTACAAAATTGCTACAGCTATTGGAGATCC
ATCACTGGAGTTACAAGTGTATGTCGCGCTTTCTGAGCTTTTCGGACGCC
TTCAGGATAACGATAAAAGTGCAACATACGCTTCTAAAGCCTACGACTTA
TCACGATCCCTGCAACTCGGTGACCTAAACTCATGCCACCATAGAGCAGC
TCTATTGCGAATGGCGGTTTCTCTCCGAAAGCAGGGTGAGCTTGGAGATG
CACAAGATTATTGTAAGGAGGCCACGAAGCTTTCCCTTATTTCTGGAGAC
CAGGCGACTTACACGAGAAGTATTCGCGTCATGGGCGACATATACCGAAA
TAAAATGGACATGGATCGTGCATTCCGGCAATATGAACAAGCTATGGGTA
CATCGGCAAGCTTAGGGGATCGTATGGCCCAAATGGAGGCTATGGATGGA
GCAGCTCGTTGCTTGGAAACACTCCGTCTACAGAACAAGATCTGCAACTG
CAGACCACTAGAATTTAACACAAGACTTCTGGAAGTTGCCAGCTCAATTG
GAGCCAAGTTTCTGGTTCGCAAAATTCGTTGCCGACTGGCATTGATCTAC
CGGGCACTAGGAGACGAAGATCAATACAACACTCATTTTAGACTAGCTAA
TCAGACGGATGCTGCGTTAGGCTTAAATTGCGGAGCGTGTGGGGAGTTGC
TTGGACTTCGTCCAGAAAACTTGGAAGCTCTACCCTGTGCACACATTCTT
CATGCAAGATGCGCCTATGAAATCTTGCGACGGCGGGAGAAAAATGCCCC
GCGATCATGCCCCGCCTGCAACAAGCTGATCAGCTCACGCACACATTTCT
GCGGCAGCGTTCCGGTTGAAAGTGAAAGCACCGACAGGTGCGTCACAGCT
GCTTCCACCTTCAATACGAATTCTTTGTCGGTCGACGGCCTCCTAGGGAT
AAACTCCGACATCCTTTTACCTTCGGCTGCGTTTTGCTACGTTAAGAATC
CAGCTCTAGATACCGAAAACAGCGCTCTCCTATCTCCCAAAGTCATTTAC
CACAGCAACTTATCATTGGCATCTCTAAGTATGCGTGCATCTAGCCTGAC
GATCGATAGCGGCCAAAATGTGACGTCATCTGTGGCAAGCTTTCTAGACC
AT
BO08190.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:41:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1909-RB | 1821 | CG1909-PB | 1..1818 | 17..1834 | 9090 | 100 | Plus |
CG1909-RA | 1821 | CG1909-PA | 1..1818 | 17..1834 | 9090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:41:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1909-RB | 2374 | CG1909-RB | 155..1973 | 16..1834 | 9095 | 100 | Plus |
CG1909-RA | 2401 | CG1909-RA | 182..2000 | 16..1834 | 9095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:41:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 585297..585773 | 492..968 | 2385 | 100 | Plus |
4 | 1348131 | 4 | 588570..588947 | 1457..1834 | 1890 | 100 | Plus |
4 | 1348131 | 4 | 587841..588042 | 1257..1458 | 1010 | 100 | Plus |
4 | 1348131 | 4 | 586902..587093 | 1067..1258 | 960 | 100 | Plus |
4 | 1348131 | 4 | 584988..585174 | 306..492 | 935 | 100 | Plus |
4 | 1348131 | 4 | 584761..584931 | 137..307 | 855 | 100 | Plus |
4 | 1348131 | 4 | 585838..585938 | 966..1066 | 505 | 100 | Plus |
4 | 1348131 | 4 | 583933..584018 | 52..137 | 430 | 100 | Plus |
4 | 1348131 | 4 | 583825..583863 | 16..54 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:41:46 has no hits.
BO08190.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:13 Download gff for
BO08190.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1909-RB | 1..1821 | 17..1837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:19:42 Download gff for
BO08190.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1909-RB | 110..1942 | 9..1839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:01:16 Download gff for
BO08190.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1909-RA | 183..2000 | 17..1836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:13 Download gff for
BO08190.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1909-RB | 110..1942 | 9..1839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:24:51 Download gff for
BO08190.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1909-RA | 183..2000 | 17..1836 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:24:51 Download gff for
BO08190.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 583826..583863 | 17..54 | 100 | -> | Plus |
4 | 583936..584018 | 55..137 | 100 | -> | Plus |
4 | 584762..584931 | 138..307 | 100 | -> | Plus |
4 | 584990..585174 | 308..492 | 100 | -> | Plus |
4 | 585298..585772 | 493..967 | 100 | -> | Plus |
4 | 585840..585938 | 968..1066 | 100 | -> | Plus |
4 | 586902..587093 | 1067..1258 | 100 | -> | Plus |
4 | 587843..588042 | 1259..1458 | 100 | -> | Plus |
4 | 588572..588947 | 1459..1836 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:01:16 Download gff for
BO08190.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 604452..604489 | 17..54 | 100 | -> | Plus |
arm_4 | 604562..604644 | 55..137 | 100 | -> | Plus |
arm_4 | 605388..605557 | 138..307 | 100 | -> | Plus |
arm_4 | 605616..605800 | 308..492 | 100 | -> | Plus |
arm_4 | 605924..606398 | 493..967 | 100 | -> | Plus |
arm_4 | 606466..606564 | 968..1066 | 100 | -> | Plus |
arm_4 | 607528..607719 | 1067..1258 | 100 | -> | Plus |
arm_4 | 608469..608668 | 1259..1458 | 100 | -> | Plus |
arm_4 | 609198..609573 | 1459..1836 | 99 | | Plus |
BO08190.pep Sequence
Translation from 16 to 1852
> BO08190.pep
MSWESINSKDLLSIPPSQNLSATRLLTSPDGSRYLLENSSDLCHLDESFS
RLAGYGSSPDVGSRSVWASQALLRSGSVISCFLSCQQSLRQYIAKRKIER
GRRLYEQNNQTEAVRTWRSALKGTCQREDCFQLLGYLYQAHMDWGKFREA
IEFSHQQLGISEELDSPNMRAETYLNLSRAHASLGGLERSLSYARHSLYN
ECGTKCRSGLVHLTVARVYLEMGGFSRALEGLQGAYKIATAIGDPSLELQ
VYVALSELFGRLQDNDKSATYASKAYDLSRSLQLGDLNSCHHRAALLRMA
VSLRKQGELGDAQDYCKEATKLSLISGDQATYTRSIRVMGDIYRNKMDMD
RAFRQYEQAMGTSASLGDRMAQMEAMDGAARCLETLRLQNKICNCRPLEF
NTRLLEVASSIGAKFLVRKIRCRLALIYRALGDEDQYNTHFRLANQTDAA
LGLNCGACGELLGLRPENLEALPCAHILHARCAYEILRRREKNAPRSCPA
CNKLISSRTHFCGSVPVESESTDRCVTAASTFNTNSLSVDGLLGINSDIL
LPSAAFCYVKNPALDTENSALLSPKVIYHSNLSLASLSMRASSLTIDSGQ
NVTSSVASFLDH
BO08190.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:45:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1909-PB | 606 | CG1909-PB | 1..606 | 1..606 | 3113 | 100 | Plus |
CG1909-PA | 606 | CG1909-PA | 1..606 | 1..606 | 3113 | 100 | Plus |
CG43163-PC | 2523 | CG43163-PC | 210..622 | 101..473 | 181 | 21.8 | Plus |
CG43163-PD | 2523 | CG43163-PD | 210..622 | 101..473 | 181 | 21.8 | Plus |