Clone BO08190 Report

Search the DGRC for BO08190

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:81
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptCG1909-RA
Protein status:BO08190.pep: validated full length
Sequenced Size:1852

Clone Sequence Records

BO08190.3prime Sequence

886 bp (775 high quality bases) assembled on 2006-01-06

> BO08190.3prime
ATGGTCTAGAAAGCTTGCCACAGATGACGTCACATTTTGGCCGCTATCGA
TCGTCAGGCTAGATGCACGCATACTTAGAGATGCCAATGATAAGTTGCTG
TGGTAAATGACTTTGGGAGATAGGAGAGCGCTGTTTTCGGTATCTAGAGC
TGGATTCTTAACGTAGCAAAACGCAGCCGAAGGTAAAAGGATGTCGGAGT
TTATCCCTAGGAGGCCGTCGACCGACAAAGAATTCGTATTGAAGGTGGAA
GCAGCTGTGACGCACCTGTCGGTGCTTTCACTTTCAACCGGAACGCTGCC
GCAGAAATGTGTGCGTGAGCTGATCAGCTTGTTGCAGGCGGGGCATGATC
GCGGGGCATTTTTCTCCCGCCGTCGCAAGATTTCATAGGCGCATCTTGCA
TGAAGAATGTGTGCACAGGGTAGAGCTTCCAAGTTTTCTGGACGAAGTCC
AAGCAACTCCCCACACGCTCCGCAATTTAAGCCTAACGCAGCATCCGTCT
GATTAGCTAGTCTAAAATGAGTGTTGTATTGATCTTCGTCTCCTAGTGCC
CGGTAGATCAATGCCAGTCGGCAACGAATTTTGCGAACCAGAAACTTGGC
TCCAATTGAGCTGGCAACTTCCAGAAGTCTTGTGTTAAATTCTAGTGGTC
TGCAGTTGCAGATCTTGTTCTGTAGACGGAGTGTTTCCAAGCAACGAGCT
GCTCCATCCATAGCCTCCATTTGGGCCATACGATCCCCTAAGCTTGCCGA
TGTACCCATAGCTTGTTCATATTGCCGGAATGCACGATCCATGTCCATTT
TATTTCGGTATATGTCGCCCATGACGCGAATACTTCTCGTGTAAGTCGCC
TGGTCTCCAGAAATAAGGGAAAGCTTCGTGGCCTCC

BO08190.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG1909-PA 1821 CG1909-RA 951..1818 886..19 4340 100 Minus
CG1909-PB 1821 CG1909-RB 951..1818 886..19 4340 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:36:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG1909-RB 2374 CG1909-RB 1106..1973 886..19 4340 100 Minus
CG1909-RA 2401 CG1909-RA 1133..2000 886..19 4340 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:36:38
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 588570..588947 396..19 1890 100 Minus
4 1348131 4 587841..588042 596..395 1010 100 Minus
4 1348131 4 586902..587093 786..595 960 100 Minus
4 1348131 4 585839..585938 886..787 500 100 Minus
Blast to na_te.dros performed on 2015-02-13 16:36:39 has no hits.

BO08190.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:34 Download gff for BO08190.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1909-PB 951..1821 16..886 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:32:02 Download gff for BO08190.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1909-PB 951..1821 16..886 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:14:07 Download gff for BO08190.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1909-RA 1133..2006 14..886 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 19:24:50 Download gff for BO08190.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1909-RA 1133..2006 14..886 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 19:24:50 Download gff for BO08190.3prime
Subject Subject Range Query Range Percent Splice Strand
4 586902..587093 595..786 100 -> Minus
4 587843..588042 395..594 100 -> Minus
4 585839..585938 787..886 100 -> Minus
4 588572..588946 20..394 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:14:07 Download gff for BO08190.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 606465..606564 787..886 100 -> Minus
arm_4 607528..607719 595..786 100 -> Minus
arm_4 608469..608668 395..594 100 -> Minus
arm_4 609198..609572 20..394 100 -> Minus

BO08190.5prime Sequence

950 bp (803 high quality bases) assembled on 2006-01-06

> BO08190.5prime
GAAGTTATCAGTCGACATGTCATGGGAGAGCATTAACTCCAAGGATCTCC
TTAGCATCCCACCAAGCCAGAATCTGTCTGCAACACGTTTACTTACATCA
CCTGATGGATCTCGTTACCTATTGGAAAATTCAAGCGACTTGTGTCACTT
AGATGAGAGTTTTTCGCGGTTGGCGGGATATGGATCTAGTCCAGATGTAG
GATCCCGTTCGGTATGGGCTAGCCAGGCGCTATTACGATCAGGTTCTGTT
ATCAGTTGCTTTTTGTCCTGCCAGCAAAGCCTAAGACAGTACATAGCTAA
ACGGAAGATCGAGCGAGGACGACGGCTATATGAACAAAACAATCAAACGG
AGGCCGTACGTACTTGGCGTAGTGCACTGAAAGGGACGTGCCAAAGAGAG
GACTGCTTTCAGCTACTAGGATATTTGTATCAGGCACATATGGACTGGGG
AAAATTTCGTGAGGCAATAGAATTCAGTCATCAGCAGCTCGGAATTTCAG
AGGAGCTTGATTCGCCAAATATGAGAGCCGAGACGTACTTAAATCTCAGC
AGGGCACACGCCAGCTTGGGAGGCTTAGAGCGATCACTGAGTTATGCCAG
GCACTCACTTTACAATGAGTGCGGCACTAAATGCAGAAGTGGACTTGTCC
ATTTGACGGTTGCACGTGTATACCTAGAAATGGGTGGGTTCTCTAGGGCT
TTGGAGGGTTTGCAGGGTGCCTACAAAATTGCTACAGCTATTGGAGATCC
ATCACTGGAGTTACAAGTGTATGTCGCGCTTTCTGAGCTTTTCGGACGCC
TTCAGGATAACGATAAAAGTGCAACATACGCTTCTAAAGCCTACGACTTA
TCACGATCCCTGCAACTCGGTGACCTAAACTCATGCCACCATAGAGCAGC
TCTATTGCGAATGGCGGTTTCTCTCCGAAAGCAGGGTGAGCTTGGAGATG

BO08190.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG1909-PA 1821 CG1909-RA 1..934 17..950 4670 100 Plus
CG1909-PB 1821 CG1909-RB 1..934 17..950 4670 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:08:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG1909-RB 2374 CG1909-RB 155..1089 16..950 4675 100 Plus
CG1909-RA 2401 CG1909-RA 182..1116 16..950 4675 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:08:46
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 585297..585755 492..950 2295 100 Plus
4 1348131 4 584988..585174 306..492 935 100 Plus
4 1348131 4 584761..584931 137..307 855 100 Plus
4 1348131 4 583933..584018 52..137 430 100 Plus
4 1348131 4 583825..583863 16..54 195 100 Plus
Blast to na_te.dros performed on 2015-02-11 22:08:47 has no hits.

BO08190.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:35 Download gff for BO08190.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1909-PB 1..934 17..950 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:32:03 Download gff for BO08190.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1909-PB 1..934 17..950 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:47:44 Download gff for BO08190.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1909-RA 174..1116 9..950 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:45:51 Download gff for BO08190.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1909-RA 174..1116 9..950 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:45:51 Download gff for BO08190.5prime
Subject Subject Range Query Range Percent Splice Strand
4 584762..584931 138..307 100 -> Plus
4 584990..585174 308..492 100 -> Plus
4 583817..583863 9..54 93 -> Plus
4 583936..584018 55..137 100 -> Plus
4 585298..585755 493..950 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:47:44 Download gff for BO08190.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 605616..605800 308..492 100 -> Plus
arm_4 604443..604489 9..54 93 -> Plus
arm_4 604562..604644 55..137 100 -> Plus
arm_4 605388..605557 138..307 100 -> Plus
arm_4 605924..606381 493..950 100   Plus

BO08190.complete Sequence

1852 bp (1852 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631095

> BO08190.complete
GAAGTTATCAGTCGACATGTCATGGGAGAGCATTAACTCCAAGGATCTCC
TTAGCATCCCACCAAGCCAGAATCTGTCTGCAACACGTTTACTTACATCA
CCTGATGGATCTCGTTACCTATTGGAAAATTCAAGCGACTTGTGTCACTT
AGATGAGAGTTTTTCGCGGTTGGCGGGATATGGATCTAGTCCAGATGTAG
GATCCCGTTCGGTATGGGCTAGCCAGGCGCTATTACGATCAGGTTCTGTT
ATCAGTTGCTTTTTGTCCTGCCAGCAAAGCCTAAGACAGTACATAGCTAA
ACGGAAGATCGAGCGAGGACGACGGCTATATGAACAAAACAATCAAACGG
AGGCCGTACGTACTTGGCGTAGTGCACTGAAAGGGACGTGCCAAAGAGAG
GACTGCTTTCAGCTACTAGGATATTTGTATCAGGCACATATGGACTGGGG
AAAATTTCGTGAGGCAATAGAATTCAGTCATCAGCAGCTCGGAATTTCAG
AGGAGCTTGATTCGCCAAATATGAGAGCCGAGACGTACTTAAATCTCAGC
AGGGCACACGCCAGCTTGGGAGGCTTAGAGCGATCACTGAGTTATGCCAG
GCACTCACTTTACAATGAGTGCGGCACTAAATGCAGAAGTGGACTTGTCC
ATTTGACGGTTGCACGTGTATACCTAGAAATGGGTGGGTTCTCTAGGGCT
TTGGAGGGTTTGCAGGGTGCCTACAAAATTGCTACAGCTATTGGAGATCC
ATCACTGGAGTTACAAGTGTATGTCGCGCTTTCTGAGCTTTTCGGACGCC
TTCAGGATAACGATAAAAGTGCAACATACGCTTCTAAAGCCTACGACTTA
TCACGATCCCTGCAACTCGGTGACCTAAACTCATGCCACCATAGAGCAGC
TCTATTGCGAATGGCGGTTTCTCTCCGAAAGCAGGGTGAGCTTGGAGATG
CACAAGATTATTGTAAGGAGGCCACGAAGCTTTCCCTTATTTCTGGAGAC
CAGGCGACTTACACGAGAAGTATTCGCGTCATGGGCGACATATACCGAAA
TAAAATGGACATGGATCGTGCATTCCGGCAATATGAACAAGCTATGGGTA
CATCGGCAAGCTTAGGGGATCGTATGGCCCAAATGGAGGCTATGGATGGA
GCAGCTCGTTGCTTGGAAACACTCCGTCTACAGAACAAGATCTGCAACTG
CAGACCACTAGAATTTAACACAAGACTTCTGGAAGTTGCCAGCTCAATTG
GAGCCAAGTTTCTGGTTCGCAAAATTCGTTGCCGACTGGCATTGATCTAC
CGGGCACTAGGAGACGAAGATCAATACAACACTCATTTTAGACTAGCTAA
TCAGACGGATGCTGCGTTAGGCTTAAATTGCGGAGCGTGTGGGGAGTTGC
TTGGACTTCGTCCAGAAAACTTGGAAGCTCTACCCTGTGCACACATTCTT
CATGCAAGATGCGCCTATGAAATCTTGCGACGGCGGGAGAAAAATGCCCC
GCGATCATGCCCCGCCTGCAACAAGCTGATCAGCTCACGCACACATTTCT
GCGGCAGCGTTCCGGTTGAAAGTGAAAGCACCGACAGGTGCGTCACAGCT
GCTTCCACCTTCAATACGAATTCTTTGTCGGTCGACGGCCTCCTAGGGAT
AAACTCCGACATCCTTTTACCTTCGGCTGCGTTTTGCTACGTTAAGAATC
CAGCTCTAGATACCGAAAACAGCGCTCTCCTATCTCCCAAAGTCATTTAC
CACAGCAACTTATCATTGGCATCTCTAAGTATGCGTGCATCTAGCCTGAC
GATCGATAGCGGCCAAAATGTGACGTCATCTGTGGCAAGCTTTCTAGACC
AT

BO08190.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:41:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG1909-RB 1821 CG1909-PB 1..1818 17..1834 9090 100 Plus
CG1909-RA 1821 CG1909-PA 1..1818 17..1834 9090 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:41:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG1909-RB 2374 CG1909-RB 155..1973 16..1834 9095 100 Plus
CG1909-RA 2401 CG1909-RA 182..2000 16..1834 9095 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:41:44
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 585297..585773 492..968 2385 100 Plus
4 1348131 4 588570..588947 1457..1834 1890 100 Plus
4 1348131 4 587841..588042 1257..1458 1010 100 Plus
4 1348131 4 586902..587093 1067..1258 960 100 Plus
4 1348131 4 584988..585174 306..492 935 100 Plus
4 1348131 4 584761..584931 137..307 855 100 Plus
4 1348131 4 585838..585938 966..1066 505 100 Plus
4 1348131 4 583933..584018 52..137 430 100 Plus
4 1348131 4 583825..583863 16..54 195 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:41:46 has no hits.

BO08190.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:13 Download gff for BO08190.complete
Subject Subject Range Query Range Percent Splice Strand
CG1909-RB 1..1821 17..1837 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:19:42 Download gff for BO08190.complete
Subject Subject Range Query Range Percent Splice Strand
CG1909-RB 110..1942 9..1839 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:01:16 Download gff for BO08190.complete
Subject Subject Range Query Range Percent Splice Strand
CG1909-RA 183..2000 17..1836 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:13 Download gff for BO08190.complete
Subject Subject Range Query Range Percent Splice Strand
CG1909-RB 110..1942 9..1839 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:24:51 Download gff for BO08190.complete
Subject Subject Range Query Range Percent Splice Strand
CG1909-RA 183..2000 17..1836 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:24:51 Download gff for BO08190.complete
Subject Subject Range Query Range Percent Splice Strand
4 583826..583863 17..54 100 -> Plus
4 583936..584018 55..137 100 -> Plus
4 584762..584931 138..307 100 -> Plus
4 584990..585174 308..492 100 -> Plus
4 585298..585772 493..967 100 -> Plus
4 585840..585938 968..1066 100 -> Plus
4 586902..587093 1067..1258 100 -> Plus
4 587843..588042 1259..1458 100 -> Plus
4 588572..588947 1459..1836 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:01:16 Download gff for BO08190.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 604452..604489 17..54 100 -> Plus
arm_4 604562..604644 55..137 100 -> Plus
arm_4 605388..605557 138..307 100 -> Plus
arm_4 605616..605800 308..492 100 -> Plus
arm_4 605924..606398 493..967 100 -> Plus
arm_4 606466..606564 968..1066 100 -> Plus
arm_4 607528..607719 1067..1258 100 -> Plus
arm_4 608469..608668 1259..1458 100 -> Plus
arm_4 609198..609573 1459..1836 99   Plus

BO08190.pep Sequence

Translation from 16 to 1852

> BO08190.pep
MSWESINSKDLLSIPPSQNLSATRLLTSPDGSRYLLENSSDLCHLDESFS
RLAGYGSSPDVGSRSVWASQALLRSGSVISCFLSCQQSLRQYIAKRKIER
GRRLYEQNNQTEAVRTWRSALKGTCQREDCFQLLGYLYQAHMDWGKFREA
IEFSHQQLGISEELDSPNMRAETYLNLSRAHASLGGLERSLSYARHSLYN
ECGTKCRSGLVHLTVARVYLEMGGFSRALEGLQGAYKIATAIGDPSLELQ
VYVALSELFGRLQDNDKSATYASKAYDLSRSLQLGDLNSCHHRAALLRMA
VSLRKQGELGDAQDYCKEATKLSLISGDQATYTRSIRVMGDIYRNKMDMD
RAFRQYEQAMGTSASLGDRMAQMEAMDGAARCLETLRLQNKICNCRPLEF
NTRLLEVASSIGAKFLVRKIRCRLALIYRALGDEDQYNTHFRLANQTDAA
LGLNCGACGELLGLRPENLEALPCAHILHARCAYEILRRREKNAPRSCPA
CNKLISSRTHFCGSVPVESESTDRCVTAASTFNTNSLSVDGLLGINSDIL
LPSAAFCYVKNPALDTENSALLSPKVIYHSNLSLASLSMRASSLTIDSGQ
NVTSSVASFLDH

BO08190.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:45:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG1909-PB 606 CG1909-PB 1..606 1..606 3113 100 Plus
CG1909-PA 606 CG1909-PA 1..606 1..606 3113 100 Plus
CG43163-PC 2523 CG43163-PC 210..622 101..473 181 21.8 Plus
CG43163-PD 2523 CG43163-PD 210..622 101..473 181 21.8 Plus