Clone BO08192 Report

Search the DGRC for BO08192

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:81
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptSobp-RA
Protein status:BO08192.pep: validated full length
Sequenced Size:2473

Clone Sequence Records

BO08192.3prime Sequence

860 bp (827 high quality bases) assembled on 2006-01-06

> BO08192.3prime
ATGGTCTAGAAAGCTTGCCTTTTTAGCTTTAGCACTACCACTGTTGCTGT
GGCTGCCGCTCATATTGCACTCTGCTTCCGGATCCGCATCCGCCTCCTTG
TTGCTACTGCCGTTGCTCTGTTCGCCATCGTTGGCCATTTCCGGTTCCTT
AAGACCCATTTTTTGGAAATCGCAGTCGATGATCCTTTTGCGCTTGCGCA
GCGGTCGACTACACTCGGCCGCCGCCTCTTTGGTTTGAATCAGTGTTCGC
TTGGTCTGCAGCCGTGTGATCTTCAGCTTGGGCAGCTTCTGGTTGTCCGC
CTCGGGTTCGGACTGCGTAGAATCCCTGACGATGCAGTGCGTCTGTTGTG
GTGAAGACGATGATTCCTGTGAAATTGATGGCGAAGCCGCGTTGGTGTCC
CCATCTGGATTTGTCTTTGGTATGGATTCCTTTTCATCCTCTTCCTGATC
GTTGTCCAGCTCCTGGCCAGGCTCACTTAGTTTCTCCACATCTGGTTTCT
CCTCCTCCAGCTCACTTCTGCTTTTGCTGCAGTCCAGCGGCTGTGGTTGC
TCCTGTTCTTCTGCGTTTTCCGCTCTGGTTGGAGCAGCCCGCTGCTCATC
GAAACGCTTCCTCTCCTCGGGAGTTAGGTGTGCCTTGTAAAAATCTATCA
CAGGCAGAGGAACGGGTATGGGTATGGGCAGGGGAATGATGATGGGATAG
GGCACCATCACGGTCACCGGCGGCACAGCCCCCAACAGAGACCCTAGCTC
GGGCATTTGAGGCGGAAGCGGTGGCCCGAAGTGCGGACCAAATCCACGAG
GCATCATGCCATGCGGAGGTGGATGCATAAAGTGATGCGGAGGCGGCGGT
GGGCGCCCCG

BO08192.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG8991-PA 2442 CG8991-RA 1598..2439 860..19 4210 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:36:18
Subject Length Description Subject Range Query Range Score Percent Strand
Sobp-RB 2823 CG8991-RB 1789..2630 860..19 4210 100 Minus
Sobp-RA 3104 CG8991-RA 2070..2911 860..19 4210 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:36:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11827363..11828204 19..860 4210 100 Plus
Blast to na_te.dros performed on 2015-02-04 20:36:15 has no hits.

BO08192.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:38 Download gff for BO08192.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8991-PA 1598..2442 18..860 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:32:07 Download gff for BO08192.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8991-PA 1598..2442 18..860 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:27:55 Download gff for BO08192.3prime
Subject Subject Range Query Range Percent Splice Strand
Sobp-RA 1789..2630 19..860 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:52:22 Download gff for BO08192.3prime
Subject Subject Range Query Range Percent Splice Strand
Sobp-RA 2070..2911 19..860 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:52:22 Download gff for BO08192.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11827363..11828204 19..860 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:27:55 Download gff for BO08192.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7714868..7715709 19..860 100   Plus

BO08192.5prime Sequence

838 bp (814 high quality bases) assembled on 2006-01-06

> BO08192.5prime
GAAGTTATCAGTCGACATGAGTTTCCTTGACGTTCGTTGCTTCGGAAAAT
CCATCGCAAGAAAACTGAAAAGAGCGTGCGAAAGCAGAAAGGCCAATTTT
TCACCCGAAAGTTATATACCGCATCCAGTTGAAATGTCCGCCAAGACGTC
GCCATCGTCCACTTCTCGGGATGCCAACGTGGGATCCTCGAGTGCGATTC
CCGTTCAGATCAAAAAAGAACTGCCCAGCGATGAGATAAAGGAATTCGCG
CACAACACCATGAACGAGCTGCTCGGCTGGTATGGATTCGAGGGTGTGGA
TGTGGATCGTCTCGACCTGACCGCCAAAACGTCGCGCCTGCTGCAAAGTG
CCGCCGCCGCAGCTGTGGCCAATCAGCAGAGCCACCAGCTTCACCAGTTG
GAGCCGCATCCGAATCTGGAGCGGAAGCGGACCAGTCTGCTTCGCAGTAG
CAGTCGCAGTTCCTTGGCAGCGGCCTACCACAACAACAACAACAACAATA
ATAACAACAACAACGGCAGCAGCAGCAAGAACAACGGAGGAGTCGGCGGC
GTAGGCGTTGGGAGTGGTCGGAAGAGCGGGTTGATGAACTGCAGCAGCAC
CACCACCACGCCATCGGACCACGACACGCGAAGCTCACGGGAGGAGGATT
CCAAGAGTCCGCACTCCATCGGGAAGCCAGCGGGAGCTGCGCACACGGAT
GAGAAAATAGACTTCAGCAATTGCTGCTGGTGCCATCGACCGATTGCGGA
GAATGCGCCGGACTACCTGACCAGCTGCGACGGACCGCGCTACTGCTCCG
AATCCTGCTTCGCCCAGAGCGGGAGGGCATCCTTTCAG

BO08192.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG8991-PA 2442 CG8991-RA 1..818 17..834 4065 99.8 Plus
CG32133-PA 6885 CG32133-RA 711..758 480..527 165 93.7 Plus
CG32133-PA 6885 CG32133-RA 714..761 480..527 140 91.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:40:02
Subject Length Description Subject Range Query Range Score Percent Strand
Sobp-RB 2823 CG8991-RB 191..1009 16..834 4080 99.9 Plus
Sobp-RA 3104 CG8991-RA 472..1290 16..834 4080 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:39:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11829968..11830438 710..240 2355 100 Minus
2R 25286936 2R 11837895..11838038 242..99 720 100 Minus
2R 25286936 2R 11828984..11829109 834..709 615 99.2 Minus
2R 25286936 2R 11839272..11839354 98..16 415 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:39:59 has no hits.

BO08192.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:39 Download gff for BO08192.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8991-PA 1..820 17..838 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:32:09 Download gff for BO08192.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8991-PA 1..820 17..838 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:39:15 Download gff for BO08192.5prime
Subject Subject Range Query Range Percent Splice Strand
Sobp-RA 188..1011 11..838 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:13:24 Download gff for BO08192.5prime
Subject Subject Range Query Range Percent Splice Strand
Sobp-RA 469..1292 11..838 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:13:24 Download gff for BO08192.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11828980..11829107 711..838 97 <- Minus
2R 11829968..11830436 242..710 100 <- Minus
2R 11837896..11838038 99..241 100 <- Minus
2R 11839272..11839357 11..98 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:39:15 Download gff for BO08192.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7716485..7716612 711..838 97 <- Minus
arm_2R 7717473..7717941 242..710 100 <- Minus
arm_2R 7725401..7725543 99..241 100 <- Minus
arm_2R 7726777..7726862 11..98 97   Minus

BO08192.complete Sequence

2473 bp (2473 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631096

> BO08192.complete
GAAGTTATCAGTCGACATGAGTTTCCTTGACGTTCGTTGCTTCGGAAAAT
CCATCGCAAGAAAACTGAAAAGAGCGTGCGAAAGCAGAAAGGCCAATTTT
TCACCCGAAAGTTATATACCGCATCCAGTTGAAATGTCCGCCAAGACGTC
GCCATCGTCCACTTCTCGGGATGCCAACGTGGGATCCTCGAGTGCGATTC
CCGTTCAGATCAAAAAAGAACTGCCCAGCGATGAGATAAAGGAATTCGCG
CACAACACCATGAACGAGCTGCTCGGCTGGTATGGATTCGAGGGTGTGGA
TGTGGATCGTCTCGACCTGACCGCCAAAACGTCGCGCCTGCTGCAAAGTG
CCGCCGCCGCAGCTGTGGCCAATCAGCAGAGCCACCAGCTTCACCAGTTG
GAGCCGCATCCGAATCTGGAGCGGAAGCGGACCAGTCTGCTTCGCAGTAG
CAGTCGCAGTTCCTTGGCAGCGGCCTACCACAACAACAACAACAACAATA
ATAACAACAACAACGGCAGCAGCAGCAAGAACAACGGAGGAGTCGGCGGC
GTAGGCGTTGGGAGTGGTCGGAAGAGCGGGTTGATGAACTGCAGCAGCAC
CACCACCACGCCATCGGACCACGACACGCGAAGCTCACGGGAGGAGGATT
CCAAGAGTCCGCACTCCATCGGGAAGCCAGCGGGAGCTGCGCACACGGAT
GAGAAAATAGACTTCAGCAATTGCTGCTGGTGCCATCGACCGATTGCGGA
GAATGCGCCGGACTACCTGACCAGCTGCGACGGACCGCGCTACTGCTCCG
AATCCTGCTTCGCCCAGAGCCGGAGGGCATCCTTCAAGAAGGCCAAGACC
TGCGACTGGTGCAAGCATGTGCGCCACGCGGTTAGCTACGTGGACTTTCA
GGACGGCGCCTCCCAGCTACAGTTCTGCTCGGAGAAGTGCCTCAACCAGT
ACAAGATGCAGATCTTCTGCCACGAAACCCAGGCGCACCTGGACATGCAT
CCGCACCTGCGGGATCAGGCCATGGATGCGGGCAGCGAGGCTGGGCTGAT
AACGCCGGATCTGTGGCTTCGAAACTGCAGGAGTCGCTCGGCCTCGCCCG
CCTCCACGCTCTCGGTGTCTCCGGGTCCGCCGCCTGCTCCGGCTGTCAGT
CGCTGTCCGGACTCACCGCCTAGTCATCATCCCAGCAAACCTTTGATCTC
AGTGGCACCCGTCTCGAAGTTGCTGGCCCAGAAGAGTCCGGGTCCCGGAC
CCGGAGCCCCTCCACCACCGCCACCGCCTGTCCAGCGGCATTTGGCGGGA
AAGTTGGGTCGCCGCAAGCGCCGAGGTATTTCCTCTTCCTTGGGCTCGGA
AACTGTGGCCAGTCTGCTGCAGAAACAGCAGCAGCAACAGGCACCGCAGC
AACATCAGGCACCTCCCACGCTAACGGCTGACTTTGGTGGATCCAGCGTA
CCACTGCCTCCGCTCTCGCCCATGCCCAGCATGCAGGAGGCACCACAACA
GCAGCAGGCTCCTCAGGTGCCACCAACACAAGCCCTGCCACGGGGACCAA
CAGCCATCCCGGCCAGCTACTTCGCGACGCCTTCGAATGGTGTGCCCATG
GGACATCCGTTTGCGGGGCGCCCACCGCCGCCTCCGCATCACTTTATGCA
TCCACCTCCGCATGGCATGATGCCTCGTGGATTTGGTCCGCACTTCGGGC
CACCGCTTCCGCCTCAAATGCCCGAGCTAGGGTCTCTGTTGGGGGCTGTG
CCGCCGGTGACCGTGATGGTGCCCTATCCCATCATCATTCCCCTGCCCAT
ACCCATACCCGTTCCTCTGCCTGTGATAGATTTTTACAAGGCACACCTAA
CTCCCGAGGAGAGGAAGCGTTTCGATGAGCAGCGGGCTGCTCCAACCAGA
GCGGAAAACGCAGAAGAACAGGAGCAACCACAGCCGCTGGACTGCAGCAA
AAGCAGAAGTGAGCTGGAGGAGGAGAAACCAGATGTGGAGAAACTAAGTG
AGCCTGGCCAGGAGCTGGACAACGATCAGGAAGAGGATGAAAAGGAATCC
ATACCAAAGACAAATCCAGATGGGGACACCAACGCGGCTTCGCCATCAAT
TTCACAGGAATCATCGTCTTCACCACAACAGACGCACTGCATCGTCAGGG
ATTCTACGCAGTCCGAACCCGAGGCGGACAACCAGAAGCTGCCCAAGCTG
AAGATCACACGGCTGCAGACCAAGCGAACACTGATTCAAACCAAAGAGGC
GGCGGCCGAGTGTAGTCGACCGCTGCGCAAGCGCAAAAGGATCATCGACT
GCGATTTCCAAAAAATGGGTCTTAAGGAACCGGAAATGGCCAACGATGGC
GAACAGAGCAACGGCAGTAGCAACAAGGAGGCGGATGCGGATCCGGAAGC
AGAGTGCAATATGAGCGGCAGCCACAGCAACAGTGGTAGTGCTAAAGCTA
AAAAGGCAAGCTTTCTAGACCAT

BO08192.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:39:14
Subject Length Description Subject Range Query Range Score Percent Strand
Sobp-RB 2442 CG8991-PB 1..2439 17..2455 12195 100 Plus
Sobp-RA 2442 CG8991-PA 1..2439 17..2455 12195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:39:16
Subject Length Description Subject Range Query Range Score Percent Strand
Sobp-RB 2823 CG8991-RB 191..2630 16..2455 12200 100 Plus
Sobp-RA 3104 CG8991-RA 472..2911 16..2455 12200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:39:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11827363..11829109 2455..709 8735 100 Minus
2R 25286936 2R 11829968..11830438 710..240 2355 100 Minus
2R 25286936 2R 11837895..11838038 242..99 720 100 Minus
2R 25286936 2R 11839272..11839354 98..16 415 100 Minus
Blast to na_te.dros performed 2014-11-28 08:39:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2607..2842 1347..1577 160 58.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6917 1364..1570 137 56 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2537 1367..1556 133 57.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6797..6840 1364..1407 130 77.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6767..6807 1367..1407 124 78 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6746..6786 1367..1407 124 78 Plus
roo 9092 roo DM_ROO 9092bp 1115..1160 1367..1415 121 75.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2293..2354 1347..1408 120 69.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2334..2382 1364..1412 119 71.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6788..6961 1367..1539 119 56.7 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3282..3322 1364..1404 115 75.6 Plus

BO08192.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:09 Download gff for BO08192.complete
Subject Subject Range Query Range Percent Splice Strand
Sobp-RA 1..2442 17..2456 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:02:33 Download gff for BO08192.complete
Subject Subject Range Query Range Percent Splice Strand
Sobp-RA 178..2616 17..2457 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:08 Download gff for BO08192.complete
Subject Subject Range Query Range Percent Splice Strand
Sobp-RA 192..2630 17..2457 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:09 Download gff for BO08192.complete
Subject Subject Range Query Range Percent Splice Strand
Sobp-RA 174..2616 11..2455 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:22:20 Download gff for BO08192.complete
Subject Subject Range Query Range Percent Splice Strand
Sobp-RA 473..2911 17..2457 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:22:20 Download gff for BO08192.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11827361..11829107 711..2457 99 <- Minus
2R 11829968..11830436 242..710 100 <- Minus
2R 11837896..11838038 99..241 100 <- Minus
2R 11839272..11839353 17..98 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:08 Download gff for BO08192.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7714866..7716612 711..2457 99 <- Minus
arm_2R 7717473..7717941 242..710 100 <- Minus
arm_2R 7725401..7725543 99..241 100 <- Minus
arm_2R 7726777..7726858 17..98 100   Minus

BO08192.pep Sequence

Translation from 16 to 2473

> BO08192.pep
MSFLDVRCFGKSIARKLKRACESRKANFSPESYIPHPVEMSAKTSPSSTS
RDANVGSSSAIPVQIKKELPSDEIKEFAHNTMNELLGWYGFEGVDVDRLD
LTAKTSRLLQSAAAAAVANQQSHQLHQLEPHPNLERKRTSLLRSSSRSSL
AAAYHNNNNNNNNNNNGSSSKNNGGVGGVGVGSGRKSGLMNCSSTTTTPS
DHDTRSSREEDSKSPHSIGKPAGAAHTDEKIDFSNCCWCHRPIAENAPDY
LTSCDGPRYCSESCFAQSRRASFKKAKTCDWCKHVRHAVSYVDFQDGASQ
LQFCSEKCLNQYKMQIFCHETQAHLDMHPHLRDQAMDAGSEAGLITPDLW
LRNCRSRSASPASTLSVSPGPPPAPAVSRCPDSPPSHHPSKPLISVAPVS
KLLAQKSPGPGPGAPPPPPPPVQRHLAGKLGRRKRRGISSSLGSETVASL
LQKQQQQQAPQQHQAPPTLTADFGGSSVPLPPLSPMPSMQEAPQQQQAPQ
VPPTQALPRGPTAIPASYFATPSNGVPMGHPFAGRPPPPPHHFMHPPPHG
MMPRGFGPHFGPPLPPQMPELGSLLGAVPPVTVMVPYPIIIPLPIPIPVP
LPVIDFYKAHLTPEERKRFDEQRAAPTRAENAEEQEQPQPLDCSKSRSEL
EEEKPDVEKLSEPGQELDNDQEEDEKESIPKTNPDGDTNAASPSISQESS
SSPQQTHCIVRDSTQSEPEADNQKLPKLKITRLQTKRTLIQTKEAAAECS
RPLRKRKRIIDCDFQKMGLKEPEMANDGEQSNGSSNKEADADPEAECNMS
GSHSNSGSAKAKKASFLDH

BO08192.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
Sobp-PB 813 CG8991-PB 1..813 1..813 4340 100 Plus
Sobp-PA 813 CG8991-PA 1..813 1..813 4340 100 Plus
CG15021-PA 420 CG15021-PA 55..320 367..703 177 26.1 Plus
ena-PE 684 CG15112-PE 279..462 390..580 166 34.5 Plus
ena-PC 684 CG15112-PC 279..462 390..580 166 34.5 Plus