Clone Sequence Records
BO08192.3prime Sequence
860 bp (827 high quality bases) assembled on 2006-01-06
> BO08192.3prime
ATGGTCTAGAAAGCTTGCCTTTTTAGCTTTAGCACTACCACTGTTGCTGT
GGCTGCCGCTCATATTGCACTCTGCTTCCGGATCCGCATCCGCCTCCTTG
TTGCTACTGCCGTTGCTCTGTTCGCCATCGTTGGCCATTTCCGGTTCCTT
AAGACCCATTTTTTGGAAATCGCAGTCGATGATCCTTTTGCGCTTGCGCA
GCGGTCGACTACACTCGGCCGCCGCCTCTTTGGTTTGAATCAGTGTTCGC
TTGGTCTGCAGCCGTGTGATCTTCAGCTTGGGCAGCTTCTGGTTGTCCGC
CTCGGGTTCGGACTGCGTAGAATCCCTGACGATGCAGTGCGTCTGTTGTG
GTGAAGACGATGATTCCTGTGAAATTGATGGCGAAGCCGCGTTGGTGTCC
CCATCTGGATTTGTCTTTGGTATGGATTCCTTTTCATCCTCTTCCTGATC
GTTGTCCAGCTCCTGGCCAGGCTCACTTAGTTTCTCCACATCTGGTTTCT
CCTCCTCCAGCTCACTTCTGCTTTTGCTGCAGTCCAGCGGCTGTGGTTGC
TCCTGTTCTTCTGCGTTTTCCGCTCTGGTTGGAGCAGCCCGCTGCTCATC
GAAACGCTTCCTCTCCTCGGGAGTTAGGTGTGCCTTGTAAAAATCTATCA
CAGGCAGAGGAACGGGTATGGGTATGGGCAGGGGAATGATGATGGGATAG
GGCACCATCACGGTCACCGGCGGCACAGCCCCCAACAGAGACCCTAGCTC
GGGCATTTGAGGCGGAAGCGGTGGCCCGAAGTGCGGACCAAATCCACGAG
GCATCATGCCATGCGGAGGTGGATGCATAAAGTGATGCGGAGGCGGCGGT
GGGCGCCCCG
BO08192.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8991-PA | 2442 | CG8991-RA | 1598..2439 | 860..19 | 4210 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:36:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sobp-RB | 2823 | CG8991-RB | 1789..2630 | 860..19 | 4210 | 100 | Minus |
Sobp-RA | 3104 | CG8991-RA | 2070..2911 | 860..19 | 4210 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:36:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11827363..11828204 | 19..860 | 4210 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:36:15 has no hits.
BO08192.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:38 Download gff for
BO08192.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8991-PA | 1598..2442 | 18..860 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:32:07 Download gff for
BO08192.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8991-PA | 1598..2442 | 18..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:27:55 Download gff for
BO08192.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sobp-RA | 1789..2630 | 19..860 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:52:22 Download gff for
BO08192.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sobp-RA | 2070..2911 | 19..860 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:52:22 Download gff for
BO08192.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11827363..11828204 | 19..860 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:27:55 Download gff for
BO08192.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7714868..7715709 | 19..860 | 100 | | Plus |
BO08192.5prime Sequence
838 bp (814 high quality bases) assembled on 2006-01-06
> BO08192.5prime
GAAGTTATCAGTCGACATGAGTTTCCTTGACGTTCGTTGCTTCGGAAAAT
CCATCGCAAGAAAACTGAAAAGAGCGTGCGAAAGCAGAAAGGCCAATTTT
TCACCCGAAAGTTATATACCGCATCCAGTTGAAATGTCCGCCAAGACGTC
GCCATCGTCCACTTCTCGGGATGCCAACGTGGGATCCTCGAGTGCGATTC
CCGTTCAGATCAAAAAAGAACTGCCCAGCGATGAGATAAAGGAATTCGCG
CACAACACCATGAACGAGCTGCTCGGCTGGTATGGATTCGAGGGTGTGGA
TGTGGATCGTCTCGACCTGACCGCCAAAACGTCGCGCCTGCTGCAAAGTG
CCGCCGCCGCAGCTGTGGCCAATCAGCAGAGCCACCAGCTTCACCAGTTG
GAGCCGCATCCGAATCTGGAGCGGAAGCGGACCAGTCTGCTTCGCAGTAG
CAGTCGCAGTTCCTTGGCAGCGGCCTACCACAACAACAACAACAACAATA
ATAACAACAACAACGGCAGCAGCAGCAAGAACAACGGAGGAGTCGGCGGC
GTAGGCGTTGGGAGTGGTCGGAAGAGCGGGTTGATGAACTGCAGCAGCAC
CACCACCACGCCATCGGACCACGACACGCGAAGCTCACGGGAGGAGGATT
CCAAGAGTCCGCACTCCATCGGGAAGCCAGCGGGAGCTGCGCACACGGAT
GAGAAAATAGACTTCAGCAATTGCTGCTGGTGCCATCGACCGATTGCGGA
GAATGCGCCGGACTACCTGACCAGCTGCGACGGACCGCGCTACTGCTCCG
AATCCTGCTTCGCCCAGAGCGGGAGGGCATCCTTTCAG
BO08192.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8991-PA | 2442 | CG8991-RA | 1..818 | 17..834 | 4065 | 99.8 | Plus |
CG32133-PA | 6885 | CG32133-RA | 711..758 | 480..527 | 165 | 93.7 | Plus |
CG32133-PA | 6885 | CG32133-RA | 714..761 | 480..527 | 140 | 91.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:40:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sobp-RB | 2823 | CG8991-RB | 191..1009 | 16..834 | 4080 | 99.9 | Plus |
Sobp-RA | 3104 | CG8991-RA | 472..1290 | 16..834 | 4080 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:39:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11829968..11830438 | 710..240 | 2355 | 100 | Minus |
2R | 25286936 | 2R | 11837895..11838038 | 242..99 | 720 | 100 | Minus |
2R | 25286936 | 2R | 11828984..11829109 | 834..709 | 615 | 99.2 | Minus |
2R | 25286936 | 2R | 11839272..11839354 | 98..16 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:39:59 has no hits.
BO08192.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:39 Download gff for
BO08192.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8991-PA | 1..820 | 17..838 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:32:09 Download gff for
BO08192.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8991-PA | 1..820 | 17..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:39:15 Download gff for
BO08192.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sobp-RA | 188..1011 | 11..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:13:24 Download gff for
BO08192.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sobp-RA | 469..1292 | 11..838 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:13:24 Download gff for
BO08192.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11828980..11829107 | 711..838 | 97 | <- | Minus |
2R | 11829968..11830436 | 242..710 | 100 | <- | Minus |
2R | 11837896..11838038 | 99..241 | 100 | <- | Minus |
2R | 11839272..11839357 | 11..98 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:39:15 Download gff for
BO08192.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7716485..7716612 | 711..838 | 97 | <- | Minus |
arm_2R | 7717473..7717941 | 242..710 | 100 | <- | Minus |
arm_2R | 7725401..7725543 | 99..241 | 100 | <- | Minus |
arm_2R | 7726777..7726862 | 11..98 | 97 | | Minus |
BO08192.complete Sequence
2473 bp (2473 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631096
> BO08192.complete
GAAGTTATCAGTCGACATGAGTTTCCTTGACGTTCGTTGCTTCGGAAAAT
CCATCGCAAGAAAACTGAAAAGAGCGTGCGAAAGCAGAAAGGCCAATTTT
TCACCCGAAAGTTATATACCGCATCCAGTTGAAATGTCCGCCAAGACGTC
GCCATCGTCCACTTCTCGGGATGCCAACGTGGGATCCTCGAGTGCGATTC
CCGTTCAGATCAAAAAAGAACTGCCCAGCGATGAGATAAAGGAATTCGCG
CACAACACCATGAACGAGCTGCTCGGCTGGTATGGATTCGAGGGTGTGGA
TGTGGATCGTCTCGACCTGACCGCCAAAACGTCGCGCCTGCTGCAAAGTG
CCGCCGCCGCAGCTGTGGCCAATCAGCAGAGCCACCAGCTTCACCAGTTG
GAGCCGCATCCGAATCTGGAGCGGAAGCGGACCAGTCTGCTTCGCAGTAG
CAGTCGCAGTTCCTTGGCAGCGGCCTACCACAACAACAACAACAACAATA
ATAACAACAACAACGGCAGCAGCAGCAAGAACAACGGAGGAGTCGGCGGC
GTAGGCGTTGGGAGTGGTCGGAAGAGCGGGTTGATGAACTGCAGCAGCAC
CACCACCACGCCATCGGACCACGACACGCGAAGCTCACGGGAGGAGGATT
CCAAGAGTCCGCACTCCATCGGGAAGCCAGCGGGAGCTGCGCACACGGAT
GAGAAAATAGACTTCAGCAATTGCTGCTGGTGCCATCGACCGATTGCGGA
GAATGCGCCGGACTACCTGACCAGCTGCGACGGACCGCGCTACTGCTCCG
AATCCTGCTTCGCCCAGAGCCGGAGGGCATCCTTCAAGAAGGCCAAGACC
TGCGACTGGTGCAAGCATGTGCGCCACGCGGTTAGCTACGTGGACTTTCA
GGACGGCGCCTCCCAGCTACAGTTCTGCTCGGAGAAGTGCCTCAACCAGT
ACAAGATGCAGATCTTCTGCCACGAAACCCAGGCGCACCTGGACATGCAT
CCGCACCTGCGGGATCAGGCCATGGATGCGGGCAGCGAGGCTGGGCTGAT
AACGCCGGATCTGTGGCTTCGAAACTGCAGGAGTCGCTCGGCCTCGCCCG
CCTCCACGCTCTCGGTGTCTCCGGGTCCGCCGCCTGCTCCGGCTGTCAGT
CGCTGTCCGGACTCACCGCCTAGTCATCATCCCAGCAAACCTTTGATCTC
AGTGGCACCCGTCTCGAAGTTGCTGGCCCAGAAGAGTCCGGGTCCCGGAC
CCGGAGCCCCTCCACCACCGCCACCGCCTGTCCAGCGGCATTTGGCGGGA
AAGTTGGGTCGCCGCAAGCGCCGAGGTATTTCCTCTTCCTTGGGCTCGGA
AACTGTGGCCAGTCTGCTGCAGAAACAGCAGCAGCAACAGGCACCGCAGC
AACATCAGGCACCTCCCACGCTAACGGCTGACTTTGGTGGATCCAGCGTA
CCACTGCCTCCGCTCTCGCCCATGCCCAGCATGCAGGAGGCACCACAACA
GCAGCAGGCTCCTCAGGTGCCACCAACACAAGCCCTGCCACGGGGACCAA
CAGCCATCCCGGCCAGCTACTTCGCGACGCCTTCGAATGGTGTGCCCATG
GGACATCCGTTTGCGGGGCGCCCACCGCCGCCTCCGCATCACTTTATGCA
TCCACCTCCGCATGGCATGATGCCTCGTGGATTTGGTCCGCACTTCGGGC
CACCGCTTCCGCCTCAAATGCCCGAGCTAGGGTCTCTGTTGGGGGCTGTG
CCGCCGGTGACCGTGATGGTGCCCTATCCCATCATCATTCCCCTGCCCAT
ACCCATACCCGTTCCTCTGCCTGTGATAGATTTTTACAAGGCACACCTAA
CTCCCGAGGAGAGGAAGCGTTTCGATGAGCAGCGGGCTGCTCCAACCAGA
GCGGAAAACGCAGAAGAACAGGAGCAACCACAGCCGCTGGACTGCAGCAA
AAGCAGAAGTGAGCTGGAGGAGGAGAAACCAGATGTGGAGAAACTAAGTG
AGCCTGGCCAGGAGCTGGACAACGATCAGGAAGAGGATGAAAAGGAATCC
ATACCAAAGACAAATCCAGATGGGGACACCAACGCGGCTTCGCCATCAAT
TTCACAGGAATCATCGTCTTCACCACAACAGACGCACTGCATCGTCAGGG
ATTCTACGCAGTCCGAACCCGAGGCGGACAACCAGAAGCTGCCCAAGCTG
AAGATCACACGGCTGCAGACCAAGCGAACACTGATTCAAACCAAAGAGGC
GGCGGCCGAGTGTAGTCGACCGCTGCGCAAGCGCAAAAGGATCATCGACT
GCGATTTCCAAAAAATGGGTCTTAAGGAACCGGAAATGGCCAACGATGGC
GAACAGAGCAACGGCAGTAGCAACAAGGAGGCGGATGCGGATCCGGAAGC
AGAGTGCAATATGAGCGGCAGCCACAGCAACAGTGGTAGTGCTAAAGCTA
AAAAGGCAAGCTTTCTAGACCAT
BO08192.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:39:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sobp-RB | 2442 | CG8991-PB | 1..2439 | 17..2455 | 12195 | 100 | Plus |
Sobp-RA | 2442 | CG8991-PA | 1..2439 | 17..2455 | 12195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:39:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sobp-RB | 2823 | CG8991-RB | 191..2630 | 16..2455 | 12200 | 100 | Plus |
Sobp-RA | 3104 | CG8991-RA | 472..2911 | 16..2455 | 12200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:39:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11827363..11829109 | 2455..709 | 8735 | 100 | Minus |
2R | 25286936 | 2R | 11829968..11830438 | 710..240 | 2355 | 100 | Minus |
2R | 25286936 | 2R | 11837895..11838038 | 242..99 | 720 | 100 | Minus |
2R | 25286936 | 2R | 11839272..11839354 | 98..16 | 415 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 08:39:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2607..2842 | 1347..1577 | 160 | 58.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6917 | 1364..1570 | 137 | 56 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2537 | 1367..1556 | 133 | 57.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6840 | 1364..1407 | 130 | 77.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6807 | 1367..1407 | 124 | 78 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6786 | 1367..1407 | 124 | 78 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1115..1160 | 1367..1415 | 121 | 75.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2293..2354 | 1347..1408 | 120 | 69.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2382 | 1364..1412 | 119 | 71.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..6961 | 1367..1539 | 119 | 56.7 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3282..3322 | 1364..1404 | 115 | 75.6 | Plus |
BO08192.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:09 Download gff for
BO08192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sobp-RA | 1..2442 | 17..2456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:02:33 Download gff for
BO08192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sobp-RA | 178..2616 | 17..2457 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:08 Download gff for
BO08192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sobp-RA | 192..2630 | 17..2457 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:09 Download gff for
BO08192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sobp-RA | 174..2616 | 11..2455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:22:20 Download gff for
BO08192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sobp-RA | 473..2911 | 17..2457 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:22:20 Download gff for
BO08192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11827361..11829107 | 711..2457 | 99 | <- | Minus |
2R | 11829968..11830436 | 242..710 | 100 | <- | Minus |
2R | 11837896..11838038 | 99..241 | 100 | <- | Minus |
2R | 11839272..11839353 | 17..98 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:08 Download gff for
BO08192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7714866..7716612 | 711..2457 | 99 | <- | Minus |
arm_2R | 7717473..7717941 | 242..710 | 100 | <- | Minus |
arm_2R | 7725401..7725543 | 99..241 | 100 | <- | Minus |
arm_2R | 7726777..7726858 | 17..98 | 100 | | Minus |
BO08192.pep Sequence
Translation from 16 to 2473
> BO08192.pep
MSFLDVRCFGKSIARKLKRACESRKANFSPESYIPHPVEMSAKTSPSSTS
RDANVGSSSAIPVQIKKELPSDEIKEFAHNTMNELLGWYGFEGVDVDRLD
LTAKTSRLLQSAAAAAVANQQSHQLHQLEPHPNLERKRTSLLRSSSRSSL
AAAYHNNNNNNNNNNNGSSSKNNGGVGGVGVGSGRKSGLMNCSSTTTTPS
DHDTRSSREEDSKSPHSIGKPAGAAHTDEKIDFSNCCWCHRPIAENAPDY
LTSCDGPRYCSESCFAQSRRASFKKAKTCDWCKHVRHAVSYVDFQDGASQ
LQFCSEKCLNQYKMQIFCHETQAHLDMHPHLRDQAMDAGSEAGLITPDLW
LRNCRSRSASPASTLSVSPGPPPAPAVSRCPDSPPSHHPSKPLISVAPVS
KLLAQKSPGPGPGAPPPPPPPVQRHLAGKLGRRKRRGISSSLGSETVASL
LQKQQQQQAPQQHQAPPTLTADFGGSSVPLPPLSPMPSMQEAPQQQQAPQ
VPPTQALPRGPTAIPASYFATPSNGVPMGHPFAGRPPPPPHHFMHPPPHG
MMPRGFGPHFGPPLPPQMPELGSLLGAVPPVTVMVPYPIIIPLPIPIPVP
LPVIDFYKAHLTPEERKRFDEQRAAPTRAENAEEQEQPQPLDCSKSRSEL
EEEKPDVEKLSEPGQELDNDQEEDEKESIPKTNPDGDTNAASPSISQESS
SSPQQTHCIVRDSTQSEPEADNQKLPKLKITRLQTKRTLIQTKEAAAECS
RPLRKRKRIIDCDFQKMGLKEPEMANDGEQSNGSSNKEADADPEAECNMS
GSHSNSGSAKAKKASFLDH
BO08192.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:47:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sobp-PB | 813 | CG8991-PB | 1..813 | 1..813 | 4340 | 100 | Plus |
Sobp-PA | 813 | CG8991-PA | 1..813 | 1..813 | 4340 | 100 | Plus |
CG15021-PA | 420 | CG15021-PA | 55..320 | 367..703 | 177 | 26.1 | Plus |
ena-PE | 684 | CG15112-PE | 279..462 | 390..580 | 166 | 34.5 | Plus |
ena-PC | 684 | CG15112-PC | 279..462 | 390..580 | 166 | 34.5 | Plus |