Clone Sequence Records
BO08205.3prime Sequence
953 bp (894 high quality bases) assembled on 2006-01-06
> BO08205.3prime
ATGGTCTAGAAAGCTTGCTTTACGCTGGTTCAGGCGTTTCACACGTATTC
TGTCGATGTTGCGCTGCAGGTGAGCGGCCACTCGGTGGCGGGCGTCGTTG
AACTCCAGGTGCAAGCCAAGGCGCAGCAGCGACGAGTTCTTCTCCACCAG
GTCGGTGATTTCCATCTCGATCTTGTTGCCCAGAACCGCAGACCGCTGAT
TGGAGGCCCTAAACTCCTCGATGGTGTGGCACTTGAGCAGGGCTTGCACC
AACTTAACAATCACGGGCGGACTGATAAAGTTGGTCTCGACATTTAATAC
TCTCAGGGTTTTGCTCTTCTCTATGGCCGCGGCTAACAGGAGGGCTGTCT
TGTCGGTGAGGCCCACATTTGTTAGCGAGAGGACTTCCAAATGTTCGTTC
TGAGGCAGTGCGGCAAACAGTTGCTCGAGTTTCTCGTCCGAGATGTTCTT
AATGTTGTTCAAGTTGAGGTCAATCAGCTTGGAGTCATCGTCCTTGACCC
GCTTGATGGATTCCTCCACATCTGTGTTGTTGGGCGGATCCATAGGGAAG
AGCTTCTGCTGAGTGGATTTCGTAATGCCATCCCATCCCAGGCCCACGGG
CTGACCCTTGTTGAGCAAGGAGGCGTGGTACTGGTCCTGATTCATCATCG
AGTGGAAGCCGAGGATGGCGGCCAGATCGATGATCTCCTCCTGCGTGGCA
TCGTTAAGGGCGTGTTCGTACTCCTCGCCCATGTCAATGGCGATTTGTTC
TTCGGCCTCGATGTCGCGGGCATCCCTTGGCGGTGGGACCCACTTCTTTC
CACGAACCTTGCCCTGAACGAACGGCTCGAACTCCGGCTGATCCGGGGTC
TCGATGGCCTGCTTATTGATGTGCTCGATCAGCTGCTTGCGATTGAGAGG
CCCGGTGGCTTCCTTGGTGCACTCATAGCTATTGCGCTGGTCTGGCGGCA
GGA
BO08205.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1539-PD | 1320 | tmod-RD | 383..1317 | 953..19 | 4675 | 100 | Minus |
CG1539-PF | 1320 | tmod-RF | 383..1317 | 953..19 | 4675 | 100 | Minus |
CG1539-PC | 1230 | tmod-RC | 293..1227 | 953..19 | 4675 | 100 | Minus |
CG1539-PA | 1104 | tmod-RA | 167..1101 | 953..19 | 4675 | 100 | Minus |
CG1539-PB | 1212 | tmod-RB | 275..1209 | 953..19 | 4675 | 100 | Minus |
CG1539-PE | 1320 | tmod-RE | 383..1317 | 953..19 | 4675 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:02:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tmod-RJ | 2753 | CG1539-RJ | 679..1613 | 953..19 | 4675 | 100 | Minus |
tmod-RI | 3000 | CG1539-RI | 926..1860 | 953..19 | 4675 | 100 | Minus |
tmod-RH | 2717 | CG1539-RH | 643..1577 | 953..19 | 4675 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:02:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30572030..30572535 | 953..448 | 2530 | 100 | Minus |
3R | 32079331 | 3R | 30572597..30572850 | 449..196 | 1270 | 100 | Minus |
3R | 32079331 | 3R | 30572922..30573072 | 198..48 | 755 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:02:45 has no hits.
BO08205.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:53 Download gff for
BO08205.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tmod-PC | 294..1230 | 15..952 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:32:30 Download gff for
BO08205.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1539-PE | 384..1320 | 15..952 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:46:14 Download gff for
BO08205.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tmod-RH | 644..1580 | 15..952 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:42:17 Download gff for
BO08205.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tmod-RH | 644..1580 | 15..952 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:42:17 Download gff for
BO08205.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30572031..30572535 | 448..952 | 100 | -> | Minus |
3R | 30572599..30572850 | 196..447 | 100 | -> | Minus |
3R | 30572925..30573072 | 48..195 | 100 | -> | Minus |
3R | 30577179..30577210 | 15..47 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:46:14 Download gff for
BO08205.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26397753..26398257 | 448..952 | 100 | -> | Minus |
arm_3R | 26398321..26398572 | 196..447 | 100 | -> | Minus |
arm_3R | 26398647..26398794 | 48..195 | 100 | -> | Minus |
arm_3R | 26402901..26402932 | 15..47 | 93 | | Minus |
BO08205.5prime Sequence
922 bp (806 high quality bases) assembled on 2006-01-06
> BO08205.5prime
GAAGTTATCAGTCGACATGGAGAGTGCCCTGCCGGTGGCCGAGTTTCAGC
AGATAAAGCTGCGTCCGGTGCCAAAGGTCAAACGCCGAGCCCCTCAGCCG
CCAGTGAGCCTTCGCCTGAAGCATAAAAATACTTCTGCCACCACAAAGAC
AACCACGCTCACCACCCCCGCCAAACTGTATGGCAAGGATCTGAGTGAGT
ACGATGATGTGGATGTGGAGAGCCTGCTGGCCCAGCTCTCCCCCGAGGAG
ATAACCATACTGGCCAAAGAAGTGGATCCCGATGACAACTTCCTGCCGCC
AGACCAGCGCAATAGCTATGAGTGCACCAAGGAAGCCACCGGGCCTCTCA
ATCGCAAGCAGCTGATCGAGCACATCAATAAGCAGGCCATCGAGACCCCG
GATCAGCCGGAGTTCGAGCCGTTCGTTCAGGGCAAGGTTCGTGGAAAGAA
GTGGGTCCCACCGCCAAGGGATGCCCGCGACATCGAGGCCGAAGAACAAA
TCGCCATTGACATGGGCGAGGAGTACGAACACGCCCTTAACGATGCCACG
CAGGAGGAGATCATCGATCTGGCCGCCATCCTCGGCTTCCACTCGATGAT
GAATCAGGACCAGTACCACGCCTCCTTGCTCAACAAGGGTCAGCCCGTGG
GCCTGGGATGGGATGGCATTACGAAATCCACTCAGCAGAAGCTCTTCCCT
ATGGATCCGCCCAACAACACAGATGTGGAGGAATCCATCAAGCGGGTCAA
GGACGATGACTCCAAGCTGATTGACCTCAACTTGAACAACATTAAGAACA
TCTCGGACGAGAAACTCGAGCAACTGTTTGCCGCACTGCCTCAGAACGAA
CATTTGGAAGTCCTCTCGCTAACAAATGTGGGCCTCACCGACNAGACAGC
CCTTCTGTTAGCCCGCGGCATA
BO08205.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1539-PB | 1212 | tmod-RB | 1..897 | 17..913 | 4441 | 99.7 | Plus |
CG1539-PD | 1320 | tmod-RD | 223..1005 | 131..913 | 3871 | 99.7 | Plus |
CG1539-PF | 1320 | tmod-RF | 223..1005 | 131..913 | 3871 | 99.7 | Plus |
CG1539-PC | 1230 | tmod-RC | 133..915 | 131..913 | 3871 | 99.7 | Plus |
CG1539-PA | 1104 | tmod-RA | 7..789 | 131..913 | 3871 | 99.7 | Plus |
CG1539-PE | 1320 | tmod-RE | 223..1005 | 131..913 | 3871 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:40:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tmod-RB | 2508 | CG1539-RB | 160..1061 | 17..919 | 4464 | 99.7 | Plus |
tmod-RJ | 2753 | CG1539-RJ | 519..1306 | 131..919 | 3894 | 99.6 | Plus |
tmod-RI | 3000 | CG1539-RI | 766..1553 | 131..919 | 3894 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:40:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30572023..30572535 | 284..796 | 2565 | 100 | Plus |
3R | 32079331 | 3R | 30571809..30571962 | 131..284 | 770 | 100 | Plus |
3R | 32079331 | 3R | 30571316..30571429 | 17..130 | 570 | 100 | Plus |
3R | 32079331 | 3R | 30572597..30572715 | 795..913 | 569 | 98.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:40:06 has no hits.
BO08205.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:54 Download gff for
BO08205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tmod-PB | 1..905 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:32:31 Download gff for
BO08205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1539-PB | 1..905 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:39:17 Download gff for
BO08205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tmod-RB | 150..1064 | 7..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:13:38 Download gff for
BO08205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tmod-RB | 150..1064 | 7..921 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:13:38 Download gff for
BO08205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30571306..30571429 | 7..130 | 96 | -> | Plus |
3R | 30571809..30571961 | 131..283 | 100 | -> | Plus |
3R | 30572023..30572535 | 284..796 | 100 | -> | Plus |
3R | 30572599..30572723 | 797..921 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:39:17 Download gff for
BO08205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26397028..26397151 | 7..130 | 96 | -> | Plus |
arm_3R | 26397531..26397683 | 131..283 | 100 | -> | Plus |
arm_3R | 26397745..26398257 | 284..796 | 100 | -> | Plus |
arm_3R | 26398321..26398445 | 797..921 | 96 | | Plus |
BO08205.complete Sequence
1243 bp (1243 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631097
> BO08205.complete
GAAGTTATCAGTCGACATGGAGAGTGCCCTGCCGGTGGCCGAGTTTCAGC
AGATAAAGCTGCGTCCGGTGCCAAAGGTCAAACGCCGAGCCCCTCAGCCG
CCAGTGAGCCTTCGCCTGAAGCATAAAAATACTTCTGCCACCACAAAGAC
AACCACGCTCACCACCCCCGCCAAACTGTATGGCAAGGATCTGAGTGAGT
ACGATGATGTGGATGTGGAGAGCCTGCTGGCCCAGCTCTCCCCCGAGGAG
ATAACCATACTGGCCAAAGAAGTGGATCCCGATGACAACTTCCTGCCGCC
AGACCAGCGCAATAGCTATGAGTGCACCAAGGAAGCCACCGGGCCTCTCA
ATCGCAAGCAGCTGATCGAGCACATCAATAAGCAGGCCATCGAGACCCCG
GATCAGCCGGAGTTCGAGCCGTTCGTTCAGGGCAAGGTTCGTGGAAAGAA
GTGGGTCCCACCGCCAAGGGATGCCCGCGACATCGAGGCCGAAGAACAAA
TCGCCATTGACATGGGCGAGGAGTACGAACACGCCCTTAACGATGCCACG
CAGGAGGAGATCATCGATCTGGCCGCCATCCTCGGCTTCCACTCGATGAT
GAATCAGGACCAGTACCACGCCTCCTTGCTCAACAAGGGTCAGCCCGTGG
GCCTGGGATGGGATGGCATTACGAAATCCACTCAGCAGAAGCTCTTCCCT
ATGGATCCGCCCAACAACACAGATGTGGAGGAATCCATCAAGCGGGTCAA
GGACGATGACTCCAAGCTGATTGACCTCAACTTGAACAACATTAAGAACA
TCTCGGACGAGAAACTCGAGCAACTGTTTGCCGCACTGCCTCAGAACGAA
CATTTGGAAGTCCTCTCGCTAACAAATGTGGGCCTCACCGACAAGACAGC
CCTCCTGTTAGCCGCGGCCATAGAGAAGAGCAAAACCCTGAGAGTATTAA
ATGTCGAGACCAACTTTATCAGTCCGCCCGTGATTGTTAAGTTGGTGCAA
GCCCTGCTCAAGTGCCACACCATCGAGGAGTTTAGGGCCTCCAATCAGCG
GTCTGCGGTTCTGGGCAACAAGATCGAGATGGAAATCACCGACCTGGTGG
AGAAGAACTCGTCGCTGCTGCGCCTTGGCTTGCACCTGGAGTTCAACGAC
GCCCGCCACCGAGTGGCCGCTCACCTGCAGCGCAACATCGACAGAATACG
TGTGAAACGCCTGAACCAGCGTAAAGCAAGCTTTCTAGACCAT
BO08205.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:35:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tmod-RB | 1212 | CG1539-PB | 1..1209 | 17..1225 | 6045 | 100 | Plus |
tmod-RJ | 1230 | CG1539-PJ | 133..1227 | 131..1225 | 5475 | 100 | Plus |
tmod-RI | 1320 | CG1539-PI | 223..1317 | 131..1225 | 5475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:35:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tmod-RB | 2508 | CG1539-RB | 160..1368 | 17..1225 | 6045 | 100 | Plus |
tmod-RJ | 2753 | CG1539-RJ | 519..1613 | 131..1225 | 5475 | 100 | Plus |
tmod-RI | 3000 | CG1539-RI | 766..1860 | 131..1225 | 5475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:35:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30572023..30572535 | 284..796 | 2565 | 100 | Plus |
3R | 32079331 | 3R | 30572597..30572850 | 795..1048 | 1270 | 100 | Plus |
3R | 32079331 | 3R | 30571809..30571962 | 131..284 | 770 | 100 | Plus |
3R | 32079331 | 3R | 30572922..30573072 | 1046..1196 | 755 | 100 | Plus |
3R | 32079331 | 3R | 30571316..30571429 | 17..130 | 570 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:35:35 has no hits.
BO08205.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:15 Download gff for
BO08205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tmod-RB | 1..1212 | 17..1229 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:00 Download gff for
BO08205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tmod-RB | 150..1371 | 7..1229 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:22 Download gff for
BO08205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tmod-RB | 160..1368 | 17..1227 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:15 Download gff for
BO08205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tmod-RB | 150..1371 | 7..1229 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:25 Download gff for
BO08205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tmod-RB | 160..1368 | 17..1227 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:25 Download gff for
BO08205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30571316..30571429 | 17..130 | 100 | -> | Plus |
3R | 30571809..30571961 | 131..283 | 100 | -> | Plus |
3R | 30572023..30572535 | 284..796 | 100 | -> | Plus |
3R | 30572599..30572850 | 797..1048 | 100 | -> | Plus |
3R | 30572925..30573072 | 1049..1196 | 100 | -> | Plus |
3R | 30577179..30577207 | 1197..1227 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:22 Download gff for
BO08205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26397038..26397151 | 17..130 | 100 | -> | Plus |
arm_3R | 26397531..26397683 | 131..283 | 100 | -> | Plus |
arm_3R | 26397745..26398257 | 284..796 | 100 | -> | Plus |
arm_3R | 26398321..26398572 | 797..1048 | 100 | -> | Plus |
arm_3R | 26398647..26398794 | 1049..1196 | 100 | -> | Plus |
arm_3R | 26402901..26402929 | 1197..1227 | 93 | | Plus |
BO08205.pep Sequence
Translation from 16 to 1243
> BO08205.pep
MESALPVAEFQQIKLRPVPKVKRRAPQPPVSLRLKHKNTSATTKTTTLTT
PAKLYGKDLSEYDDVDVESLLAQLSPEEITILAKEVDPDDNFLPPDQRNS
YECTKEATGPLNRKQLIEHINKQAIETPDQPEFEPFVQGKVRGKKWVPPP
RDARDIEAEEQIAIDMGEEYEHALNDATQEEIIDLAAILGFHSMMNQDQY
HASLLNKGQPVGLGWDGITKSTQQKLFPMDPPNNTDVEESIKRVKDDDSK
LIDLNLNNIKNISDEKLEQLFAALPQNEHLEVLSLTNVGLTDKTALLLAA
AIEKSKTLRVLNVETNFISPPVIVKLVQALLKCHTIEEFRASNQRSAVLG
NKIEMEITDLVEKNSSLLRLGLHLEFNDARHRVAAHLQRNIDRIRVKRLN
QRKASFLDH
BO08205.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:19:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tmod-PB | 403 | CG1539-PB | 1..403 | 1..403 | 2053 | 100 | Plus |
tmod-PI | 439 | CG1539-PI | 66..439 | 30..403 | 1864 | 98.1 | Plus |
tmod-PL | 439 | CG1539-PL | 66..439 | 30..403 | 1864 | 98.1 | Plus |
tmod-PA | 367 | CG1539-PA | 3..367 | 39..403 | 1860 | 100 | Plus |
tmod-PH | 372 | CG1539-PH | 8..372 | 39..403 | 1860 | 100 | Plus |