Clone BO08208 Report

Search the DGRC for BO08208

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:82
Well:8
Vector:pDNR-Dual
Associated Gene/Transcriptkat-60L1-RA
Protein status:BO08208.pep: validated full length
Sequenced Size:1849

Clone Sequence Records

BO08208.3prime Sequence

901 bp (829 high quality bases) assembled on 2006-01-06

> BO08208.3prime
ATGGTCTAGAAAGCTTGCGCACGACCCGTATTCCTCCATCCACTTTTCGA
AGCGGGCAACGTCATCGGCAGAGACGGACTTCTTGGTGCGCAGACGGGCG
TCCTGGAAGTCCTGCAAAGTAATCGGCTGGTCAACCTCCTCGCGTCGGAT
TTGCTTAATCTGATCGGGAGTGCGTCCGGAAATGAGGCGCCGCATGGCCA
TCATGGAGGCGTCCCGGCACACGTTGCTTATGTCCGATCCCGAGTAGCCC
TGCAGTTCGTCGCCGATTATTCCGGTGTTCAGACTGGGCGACAGGCATAC
GTCCTTCAGGCAGAGCTTGAGGAGAGCCGATCGGGTGCCCTCGTTTGGGA
GAGGAATATAGATTCGCTTTTCAAAACGTCTCCGGAAAGCCTCATCGATG
TCCCACGGGTGATTGGTGGCCGCCAGCACCATGATCACCTTCTCCTCCTG
CATGCTTGCGTTGAGTCCGTCCATTTGGATGAGCAGCTCGGCCTTGAACC
GCCGACTGGCCTCGTGCTCCGAGTCACTGCCCCTGGAGGCGCATAGGGCG
TCTATCTCGTCGATGAAAATGGTGCTGGGCGCATAAAATCGGGCCATCTC
GAACAGGAGACGCACCAGCTTCTCGCTCTCTCCTCGGTATTTCGAGGTCA
GGGTCGAGGAGGACACGTTGAAGAAGGTGGTTCCACATTCTGTGGCCACC
GCCTTGGCCAGCATGGTTTTGCCTGTTCCCGGCGGACCGACCATCAACAC
TCCACGCCACGGCCGGCGGATTCCCTTGAAGAACTCCGGCATGATTACCG
GAAGCACCACTGCTTCCTGGAGTATTGTCTTGGCCTCATTGAGCCCAGCC
ACATCGGTCCACTTGATGCACGGATGGCGCTGCAGAATGTCCTTCTCCAG
G

BO08208.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG1193-PA 1818 CG1193-RA 933..1815 901..19 4415 100 Minus
CG1193-PB 2010 CG1193-RB 1125..2007 901..19 4415 100 Minus
CG9475-PB 1170 Rpt3R-RB 544..573 723..694 150 100 Minus
CG9475-PA 1266 Rpt3R-RA 640..669 723..694 150 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:49:09
Subject Length Description Subject Range Query Range Score Percent Strand
kat-60L1-RH 2313 CG1193-RH 1083..1965 901..19 4415 100 Minus
kat-60L1-RG 2479 CG1193-RG 1249..2131 901..19 4415 100 Minus
kat-60L1-RF 2172 CG1193-RF 1071..1953 901..19 4415 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:49:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5786263..5786739 818..342 2385 100 Minus
3R 32079331 3R 5786794..5787117 342..19 1620 100 Minus
3R 32079331 3R 5228408..5228838 346..776 565 75.4 Plus
3R 32079331 3R 5785983..5786068 901..816 430 100 Minus
Blast to na_te.dros performed on 2015-02-12 15:49:08 has no hits.

BO08208.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:57 Download gff for BO08208.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1193-PB 1125..2010 18..901 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:32:36 Download gff for BO08208.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1193-PB 1125..2010 18..901 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:09:56 Download gff for BO08208.3prime
Subject Subject Range Query Range Percent Splice Strand
kat-60L1-RF 1071..1958 11..901 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:24:27 Download gff for BO08208.3prime
Subject Subject Range Query Range Percent Splice Strand
kat-60L1-RF 1071..1958 11..901 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:24:27 Download gff for BO08208.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5785983..5786067 817..901 100 -> Minus
3R 5786265..5786739 342..816 100 -> Minus
3R 5786795..5787122 11..341 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:09:56 Download gff for BO08208.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1611705..1611789 817..901 100 -> Minus
arm_3R 1611987..1612461 342..816 100 -> Minus
arm_3R 1612517..1612844 11..341 98   Minus

BO08208.5prime Sequence

834 bp (831 high quality bases) assembled on 2006-01-06

> BO08208.5prime
GAAGTTATCAGTCGACATGCGGGTCGAGGAGGCGACCTATAGGCGCACCA
CGCGCGAGAAGATTGTGCTGCGAGGGAACACCACCATACGCACCGTGGAC
TCCACTTCCACATACCTGCCCGTGATGAGTCCTGCGGGCTCTTCCACACC
TCCGACAAGCCTGTCGCACATGGCCCGGATGATGGACTCCCTGATCCTCG
ACTCGCTATCCCCATTTGGCTTCACGAAGATCACGGCCACCAGTCGACCT
TCCCGGAACGCCAGCTTGAAGAAGAGCTCGGAAGGCGGCCACTCCTCGAC
AGCAGAGCGCCACCGGCCCGTCAACAACCTGGGCTCTAATGCACCTGGGG
GATTGGGCATTGGCGGAAGTGTTCCGTTGCGCAGCAAGCAGCGGCTACCC
ACGCAAGAAGTGGCACCACAACCGCGAGCCAGTCAGACGGCCCAAATGCC
ATTTCCGTCGCAGCAGCAGGATAATCGGTGGGTGTCCTCCCTGCGTCGGC
GGGATCCCGAGCTGCAGCCCACTTTACCCTCCATCAACAGCAATGCGAAC
AGCAGCAGCCTCAGCCAGAGCCACCACGGAAGTGCTGGGAACGTGGGATT
GGCGGGCGCAGGAGCACCTACACCCGCCGCCAGCATGGGCACAATGCGCC
TGGGGCGACCAGCAAGGGCATCCGCCATGACCGCCGCCTTGCGGAAGAGC
CGATCCGTGGAGCGCCTGCGGGCCAGGAAGCTCAGCACAAACACCCAGCT
TAACTTGAAGCACAAGCCGGTTAAGAAGAACTCGCTGGACGAAAACTCCA
ACTCGGATGACCAAGACGCCACCACATCCCTGGA

BO08208.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG1193-PA 1818 CG1193-RA 1..818 17..834 4090 100 Plus
CG1193-PB 2010 CG1193-RB 314..1010 138..834 3485 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:37:06
Subject Length Description Subject Range Query Range Score Percent Strand
kat-60L1-RF 2172 CG1193-RF 139..956 17..834 4090 100 Plus
kat-60L1-RA 2301 CG1193-RA 139..956 17..834 4090 100 Plus
kat-60L1-RH 2313 CG1193-RH 139..968 17..834 3960 98.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:37:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5785440..5785868 406..834 2145 100 Plus
3R 32079331 3R 5785112..5785381 138..407 1350 100 Plus
3R 32079331 3R 5781900..5782021 17..138 610 100 Plus
Blast to na_te.dros performed 2015-02-13 16:37:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3243..3321 497..577 120 64.2 Plus

BO08208.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:58 Download gff for BO08208.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1193-PA 1..817 17..833 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:32:37 Download gff for BO08208.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1193-PA 1..817 17..833 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:14:13 Download gff for BO08208.5prime
Subject Subject Range Query Range Percent Splice Strand
kat-60L1-RA 133..955 10..833 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 19:25:33 Download gff for BO08208.5prime
Subject Subject Range Query Range Percent Splice Strand
kat-60L1-RA 133..955 10..833 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 19:25:33 Download gff for BO08208.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5781894..5782021 10..138 97 -> Plus
3R 5785113..5785381 139..407 100 -> Plus
3R 5785442..5785867 408..833 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:14:13 Download gff for BO08208.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1607616..1607743 10..138 97 -> Plus
arm_3R 1610835..1611103 139..407 100 -> Plus
arm_3R 1611164..1611589 408..833 100   Plus

BO08208.complete Sequence

1849 bp (1849 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631098

> BO08208.complete
GAAGTTATCAGTCGACATGCGGGTCGAGGAGGCGACCTATAGGCGCACCA
CGCGCGAGAAGATTGTGCTGCGAGGGAACACCACCATACGCACCGTGGAC
TCCACTTCCACATACCTGCCCGTGATGAGTCCTGCGGGCTCTTCCACACC
TCCGACAAGCCTGTCGCACATGGCCCGGATGATGGACTCCCTGATCCTCG
ACTCGCTATCCCCATTTGGCTTCACGAAGATCACGGCCACCAGTCGACCT
TCCCGGAACGCCAGCTTGAAGAAGAGCTCGGAAGGCGGCCACTCCTCGAC
AGCAGAGCGCCACCGGCCCGTCAACAACCTGGGCTCTAATGCACCTGGGG
GATTGGGCATTGGCGGAAGTGTTCCGTTGCGCAGCAAGCAGCGGCTACCC
ACGCAAGAAGTGGCACCACAACCGCGAGCCAGTCAGACGGCCCAAATGCC
ATTTCCGTCGCAGCAGCAGGATAATCGGTGGGTGTCCTCCCTGCGTCGGC
GGGATCCCGAGCTGCAGCCCACTTTACCCTCCATCAACAGCAATGCGAAC
AGCAGCAGCCTCAGCCAGAGCCACCACGGAAGTGCTGGGAACGTGGGATT
GGCGGGCGCAGGAGCACCTACACCCGCCGCCAGCATGGGCACAATGCGCC
TGGGGCGACCAGCAAGGGCATCCGCCATGACCGCCGCCTTGCGGAAGAGC
CGATCCGTGGAGCGCCTGCGGGCCAGGAAGCTCAGCACAAACACCCAGCT
TAACTTGAAGCACAAGCCGGTTAAGAAGAACTCGCTGGACGAAAACTCCA
ACTCGGATGACCAAGACGCCACCACATCCCTGGAAGACAACTCGCACGCC
CAGTCCCTAGCCACCAGCCACAACACGCCCAAATGCTCACCGAAGACCAA
GGCCAAGCACTTCTCGCCCTTGGGCTACGAGGTTCATCTGGTGGACACCC
TGGAGAAGGACATTCTGCAGCGCCATCCGTGCATCAAGTGGACCGATGTG
GCTGGGCTCAATGAGGCCAAGACAATACTCCAGGAAGCAGTGGTGCTTCC
GGTAATCATGCCGGAGTTCTTCAAGGGAATCCGCCGGCCGTGGCGTGGAG
TGTTGATGGTCGGTCCGCCGGGAACAGGCAAAACCATGCTGGCCAAGGCG
GTGGCCACAGAATGTGGAACCACCTTCTTCAACGTGTCCTCCTCGACCCT
GACCTCGAAATACCGAGGAGAGAGCGAGAAGCTGGTGCGTCTCCTGTTCG
AGATGGCCCGATTTTATGCGCCCAGCACCATTTTCATCGACGAGATAGAC
GCCCTATGCGCCTCCAGGGGCAGTGACTCGGAGCACGAGGCCAGTCGGCG
GTTCAAGGCCGAGCTGCTCATCCAAATGGACGGACTCAACGCAAGCATGC
AGGAGGAGAAGGTGATCATGGTGCTGGCGGCCACCAATCACCCGTGGGAC
ATCGATGAGGCTTTCCGGAGACGTTTTGAAAAGCGAATCTATATTCCTCT
CCCAAACGAGGGCACCCGATCGGCTCTCCTCAAGCTCTGCCTGAAGGACG
TATGCCTGTCGCCCAGTCTGAACACCGGAATAATCGGCGACGAACTGCAG
GGCTACTCGGGATCGGACATAAGCAACGTGTGCCGGGACGCCTCCATGAT
GGCCATGCGGCGCCTCATTTCCGGACGCACTCCCGATCAGATTAAGCAAA
TCCGACGCGAGGAGGTTGACCAGCCGATTACTTTGCAGGACTTCCAGGAC
GCCCGTCTGCGCACCAAGAAGTCCGTCTCTGCCGATGACGTTGCCCGCTT
CGAAAAGTGGATGGAGGAATACGGGTCGTGCGCAAGCTTTCTAGACCAT

BO08208.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
kat-60L1-RF 1818 CG1193-PF 1..1815 17..1831 9075 100 Plus
kat-60L1-RA 1818 CG1193-PA 1..1815 17..1831 9075 100 Plus
kat-60L1-RH 1830 CG1193-PH 1..1827 17..1831 8920 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:59:05
Subject Length Description Subject Range Query Range Score Percent Strand
kat-60L1-RF 2172 CG1193-RF 139..1953 17..1831 9075 100 Plus
kat-60L1-RA 2301 CG1193-RA 139..1953 17..1831 9075 100 Plus
kat-60L1-RH 2313 CG1193-RH 139..1965 17..1831 8920 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:59:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5785440..5786068 406..1034 3145 100 Plus
3R 32079331 3R 5786263..5786739 1032..1508 2385 100 Plus
3R 32079331 3R 5786794..5787117 1508..1831 1620 100 Plus
3R 32079331 3R 5785112..5785381 138..407 1350 100 Plus
3R 32079331 3R 5781900..5782021 17..138 610 100 Plus
3R 32079331 3R 5228408..5228838 1504..1074 565 75.4 Minus
Blast to na_te.dros performed 2014-11-28 00:59:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3243..3321 497..577 120 64.2 Plus

BO08208.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:16 Download gff for BO08208.complete
Subject Subject Range Query Range Percent Splice Strand
CG1193-RA 1..1818 17..1832 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:19:46 Download gff for BO08208.complete
Subject Subject Range Query Range Percent Splice Strand
CG1193-RA 133..1958 10..1839 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:35:45 Download gff for BO08208.complete
Subject Subject Range Query Range Percent Splice Strand
kat-60L1-RA 139..1953 17..1833 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:16 Download gff for BO08208.complete
Subject Subject Range Query Range Percent Splice Strand
CG1193-RA 133..1958 10..1839 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:43 Download gff for BO08208.complete
Subject Subject Range Query Range Percent Splice Strand
kat-60L1-RA 139..1953 17..1833 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:43 Download gff for BO08208.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5781900..5782021 17..138 100 -> Plus
3R 5785113..5785381 139..407 100 -> Plus
3R 5785442..5786067 408..1033 100 -> Plus
3R 5786265..5786739 1034..1508 100 -> Plus
3R 5786795..5787117 1509..1833 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:35:45 Download gff for BO08208.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1607622..1607743 17..138 100 -> Plus
arm_3R 1610835..1611103 139..407 100 -> Plus
arm_3R 1611164..1611789 408..1033 100 -> Plus
arm_3R 1611987..1612461 1034..1508 100 -> Plus
arm_3R 1612517..1612839 1509..1833 99   Plus

BO08208.pep Sequence

Translation from 16 to 1849

> BO08208.pep
MRVEEATYRRTTREKIVLRGNTTIRTVDSTSTYLPVMSPAGSSTPPTSLS
HMARMMDSLILDSLSPFGFTKITATSRPSRNASLKKSSEGGHSSTAERHR
PVNNLGSNAPGGLGIGGSVPLRSKQRLPTQEVAPQPRASQTAQMPFPSQQ
QDNRWVSSLRRRDPELQPTLPSINSNANSSSLSQSHHGSAGNVGLAGAGA
PTPAASMGTMRLGRPARASAMTAALRKSRSVERLRARKLSTNTQLNLKHK
PVKKNSLDENSNSDDQDATTSLEDNSHAQSLATSHNTPKCSPKTKAKHFS
PLGYEVHLVDTLEKDILQRHPCIKWTDVAGLNEAKTILQEAVVLPVIMPE
FFKGIRRPWRGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYR
GESEKLVRLLFEMARFYAPSTIFIDEIDALCASRGSDSEHEASRRFKAEL
LIQMDGLNASMQEEKVIMVLAATNHPWDIDEAFRRRFEKRIYIPLPNEGT
RSALLKLCLKDVCLSPSLNTGIIGDELQGYSGSDISNVCRDASMMAMRRL
ISGRTPDQIKQIRREEVDQPITLQDFQDARLRTKKSVSADDVARFEKWME
EYGSCASFLDH

BO08208.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
kat-60L1-PF 605 CG1193-PF 1..605 1..605 3095 100 Plus
kat-60L1-PA 605 CG1193-PA 1..605 1..605 3095 100 Plus
kat-60L1-PH 609 CG1193-PH 1..609 1..605 3080 99.3 Plus
kat-60L1-PD 609 CG1193-PD 1..609 1..605 3080 99.3 Plus
kat-60L1-PC 669 CG1193-PC 106..669 42..605 2891 100 Plus