Clone Sequence Records
BO08208.3prime Sequence
901 bp (829 high quality bases) assembled on 2006-01-06
> BO08208.3prime
ATGGTCTAGAAAGCTTGCGCACGACCCGTATTCCTCCATCCACTTTTCGA
AGCGGGCAACGTCATCGGCAGAGACGGACTTCTTGGTGCGCAGACGGGCG
TCCTGGAAGTCCTGCAAAGTAATCGGCTGGTCAACCTCCTCGCGTCGGAT
TTGCTTAATCTGATCGGGAGTGCGTCCGGAAATGAGGCGCCGCATGGCCA
TCATGGAGGCGTCCCGGCACACGTTGCTTATGTCCGATCCCGAGTAGCCC
TGCAGTTCGTCGCCGATTATTCCGGTGTTCAGACTGGGCGACAGGCATAC
GTCCTTCAGGCAGAGCTTGAGGAGAGCCGATCGGGTGCCCTCGTTTGGGA
GAGGAATATAGATTCGCTTTTCAAAACGTCTCCGGAAAGCCTCATCGATG
TCCCACGGGTGATTGGTGGCCGCCAGCACCATGATCACCTTCTCCTCCTG
CATGCTTGCGTTGAGTCCGTCCATTTGGATGAGCAGCTCGGCCTTGAACC
GCCGACTGGCCTCGTGCTCCGAGTCACTGCCCCTGGAGGCGCATAGGGCG
TCTATCTCGTCGATGAAAATGGTGCTGGGCGCATAAAATCGGGCCATCTC
GAACAGGAGACGCACCAGCTTCTCGCTCTCTCCTCGGTATTTCGAGGTCA
GGGTCGAGGAGGACACGTTGAAGAAGGTGGTTCCACATTCTGTGGCCACC
GCCTTGGCCAGCATGGTTTTGCCTGTTCCCGGCGGACCGACCATCAACAC
TCCACGCCACGGCCGGCGGATTCCCTTGAAGAACTCCGGCATGATTACCG
GAAGCACCACTGCTTCCTGGAGTATTGTCTTGGCCTCATTGAGCCCAGCC
ACATCGGTCCACTTGATGCACGGATGGCGCTGCAGAATGTCCTTCTCCAG
G
BO08208.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1193-PA | 1818 | CG1193-RA | 933..1815 | 901..19 | 4415 | 100 | Minus |
CG1193-PB | 2010 | CG1193-RB | 1125..2007 | 901..19 | 4415 | 100 | Minus |
CG9475-PB | 1170 | Rpt3R-RB | 544..573 | 723..694 | 150 | 100 | Minus |
CG9475-PA | 1266 | Rpt3R-RA | 640..669 | 723..694 | 150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:49:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kat-60L1-RH | 2313 | CG1193-RH | 1083..1965 | 901..19 | 4415 | 100 | Minus |
kat-60L1-RG | 2479 | CG1193-RG | 1249..2131 | 901..19 | 4415 | 100 | Minus |
kat-60L1-RF | 2172 | CG1193-RF | 1071..1953 | 901..19 | 4415 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:49:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5786263..5786739 | 818..342 | 2385 | 100 | Minus |
3R | 32079331 | 3R | 5786794..5787117 | 342..19 | 1620 | 100 | Minus |
3R | 32079331 | 3R | 5228408..5228838 | 346..776 | 565 | 75.4 | Plus |
3R | 32079331 | 3R | 5785983..5786068 | 901..816 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 15:49:08 has no hits.
BO08208.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:57 Download gff for
BO08208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1193-PB | 1125..2010 | 18..901 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:32:36 Download gff for
BO08208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1193-PB | 1125..2010 | 18..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:09:56 Download gff for
BO08208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kat-60L1-RF | 1071..1958 | 11..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:24:27 Download gff for
BO08208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kat-60L1-RF | 1071..1958 | 11..901 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:24:27 Download gff for
BO08208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5785983..5786067 | 817..901 | 100 | -> | Minus |
3R | 5786265..5786739 | 342..816 | 100 | -> | Minus |
3R | 5786795..5787122 | 11..341 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:09:56 Download gff for
BO08208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1611705..1611789 | 817..901 | 100 | -> | Minus |
arm_3R | 1611987..1612461 | 342..816 | 100 | -> | Minus |
arm_3R | 1612517..1612844 | 11..341 | 98 | | Minus |
BO08208.5prime Sequence
834 bp (831 high quality bases) assembled on 2006-01-06
> BO08208.5prime
GAAGTTATCAGTCGACATGCGGGTCGAGGAGGCGACCTATAGGCGCACCA
CGCGCGAGAAGATTGTGCTGCGAGGGAACACCACCATACGCACCGTGGAC
TCCACTTCCACATACCTGCCCGTGATGAGTCCTGCGGGCTCTTCCACACC
TCCGACAAGCCTGTCGCACATGGCCCGGATGATGGACTCCCTGATCCTCG
ACTCGCTATCCCCATTTGGCTTCACGAAGATCACGGCCACCAGTCGACCT
TCCCGGAACGCCAGCTTGAAGAAGAGCTCGGAAGGCGGCCACTCCTCGAC
AGCAGAGCGCCACCGGCCCGTCAACAACCTGGGCTCTAATGCACCTGGGG
GATTGGGCATTGGCGGAAGTGTTCCGTTGCGCAGCAAGCAGCGGCTACCC
ACGCAAGAAGTGGCACCACAACCGCGAGCCAGTCAGACGGCCCAAATGCC
ATTTCCGTCGCAGCAGCAGGATAATCGGTGGGTGTCCTCCCTGCGTCGGC
GGGATCCCGAGCTGCAGCCCACTTTACCCTCCATCAACAGCAATGCGAAC
AGCAGCAGCCTCAGCCAGAGCCACCACGGAAGTGCTGGGAACGTGGGATT
GGCGGGCGCAGGAGCACCTACACCCGCCGCCAGCATGGGCACAATGCGCC
TGGGGCGACCAGCAAGGGCATCCGCCATGACCGCCGCCTTGCGGAAGAGC
CGATCCGTGGAGCGCCTGCGGGCCAGGAAGCTCAGCACAAACACCCAGCT
TAACTTGAAGCACAAGCCGGTTAAGAAGAACTCGCTGGACGAAAACTCCA
ACTCGGATGACCAAGACGCCACCACATCCCTGGA
BO08208.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1193-PA | 1818 | CG1193-RA | 1..818 | 17..834 | 4090 | 100 | Plus |
CG1193-PB | 2010 | CG1193-RB | 314..1010 | 138..834 | 3485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:37:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kat-60L1-RF | 2172 | CG1193-RF | 139..956 | 17..834 | 4090 | 100 | Plus |
kat-60L1-RA | 2301 | CG1193-RA | 139..956 | 17..834 | 4090 | 100 | Plus |
kat-60L1-RH | 2313 | CG1193-RH | 139..968 | 17..834 | 3960 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:37:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5785440..5785868 | 406..834 | 2145 | 100 | Plus |
3R | 32079331 | 3R | 5785112..5785381 | 138..407 | 1350 | 100 | Plus |
3R | 32079331 | 3R | 5781900..5782021 | 17..138 | 610 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 16:37:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3243..3321 | 497..577 | 120 | 64.2 | Plus |
BO08208.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:40:58 Download gff for
BO08208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1193-PA | 1..817 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:32:37 Download gff for
BO08208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1193-PA | 1..817 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:14:13 Download gff for
BO08208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kat-60L1-RA | 133..955 | 10..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 19:25:33 Download gff for
BO08208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kat-60L1-RA | 133..955 | 10..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 19:25:33 Download gff for
BO08208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5781894..5782021 | 10..138 | 97 | -> | Plus |
3R | 5785113..5785381 | 139..407 | 100 | -> | Plus |
3R | 5785442..5785867 | 408..833 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:14:13 Download gff for
BO08208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1607616..1607743 | 10..138 | 97 | -> | Plus |
arm_3R | 1610835..1611103 | 139..407 | 100 | -> | Plus |
arm_3R | 1611164..1611589 | 408..833 | 100 | | Plus |
BO08208.complete Sequence
1849 bp (1849 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631098
> BO08208.complete
GAAGTTATCAGTCGACATGCGGGTCGAGGAGGCGACCTATAGGCGCACCA
CGCGCGAGAAGATTGTGCTGCGAGGGAACACCACCATACGCACCGTGGAC
TCCACTTCCACATACCTGCCCGTGATGAGTCCTGCGGGCTCTTCCACACC
TCCGACAAGCCTGTCGCACATGGCCCGGATGATGGACTCCCTGATCCTCG
ACTCGCTATCCCCATTTGGCTTCACGAAGATCACGGCCACCAGTCGACCT
TCCCGGAACGCCAGCTTGAAGAAGAGCTCGGAAGGCGGCCACTCCTCGAC
AGCAGAGCGCCACCGGCCCGTCAACAACCTGGGCTCTAATGCACCTGGGG
GATTGGGCATTGGCGGAAGTGTTCCGTTGCGCAGCAAGCAGCGGCTACCC
ACGCAAGAAGTGGCACCACAACCGCGAGCCAGTCAGACGGCCCAAATGCC
ATTTCCGTCGCAGCAGCAGGATAATCGGTGGGTGTCCTCCCTGCGTCGGC
GGGATCCCGAGCTGCAGCCCACTTTACCCTCCATCAACAGCAATGCGAAC
AGCAGCAGCCTCAGCCAGAGCCACCACGGAAGTGCTGGGAACGTGGGATT
GGCGGGCGCAGGAGCACCTACACCCGCCGCCAGCATGGGCACAATGCGCC
TGGGGCGACCAGCAAGGGCATCCGCCATGACCGCCGCCTTGCGGAAGAGC
CGATCCGTGGAGCGCCTGCGGGCCAGGAAGCTCAGCACAAACACCCAGCT
TAACTTGAAGCACAAGCCGGTTAAGAAGAACTCGCTGGACGAAAACTCCA
ACTCGGATGACCAAGACGCCACCACATCCCTGGAAGACAACTCGCACGCC
CAGTCCCTAGCCACCAGCCACAACACGCCCAAATGCTCACCGAAGACCAA
GGCCAAGCACTTCTCGCCCTTGGGCTACGAGGTTCATCTGGTGGACACCC
TGGAGAAGGACATTCTGCAGCGCCATCCGTGCATCAAGTGGACCGATGTG
GCTGGGCTCAATGAGGCCAAGACAATACTCCAGGAAGCAGTGGTGCTTCC
GGTAATCATGCCGGAGTTCTTCAAGGGAATCCGCCGGCCGTGGCGTGGAG
TGTTGATGGTCGGTCCGCCGGGAACAGGCAAAACCATGCTGGCCAAGGCG
GTGGCCACAGAATGTGGAACCACCTTCTTCAACGTGTCCTCCTCGACCCT
GACCTCGAAATACCGAGGAGAGAGCGAGAAGCTGGTGCGTCTCCTGTTCG
AGATGGCCCGATTTTATGCGCCCAGCACCATTTTCATCGACGAGATAGAC
GCCCTATGCGCCTCCAGGGGCAGTGACTCGGAGCACGAGGCCAGTCGGCG
GTTCAAGGCCGAGCTGCTCATCCAAATGGACGGACTCAACGCAAGCATGC
AGGAGGAGAAGGTGATCATGGTGCTGGCGGCCACCAATCACCCGTGGGAC
ATCGATGAGGCTTTCCGGAGACGTTTTGAAAAGCGAATCTATATTCCTCT
CCCAAACGAGGGCACCCGATCGGCTCTCCTCAAGCTCTGCCTGAAGGACG
TATGCCTGTCGCCCAGTCTGAACACCGGAATAATCGGCGACGAACTGCAG
GGCTACTCGGGATCGGACATAAGCAACGTGTGCCGGGACGCCTCCATGAT
GGCCATGCGGCGCCTCATTTCCGGACGCACTCCCGATCAGATTAAGCAAA
TCCGACGCGAGGAGGTTGACCAGCCGATTACTTTGCAGGACTTCCAGGAC
GCCCGTCTGCGCACCAAGAAGTCCGTCTCTGCCGATGACGTTGCCCGCTT
CGAAAAGTGGATGGAGGAATACGGGTCGTGCGCAAGCTTTCTAGACCAT
BO08208.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:59:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kat-60L1-RF | 1818 | CG1193-PF | 1..1815 | 17..1831 | 9075 | 100 | Plus |
kat-60L1-RA | 1818 | CG1193-PA | 1..1815 | 17..1831 | 9075 | 100 | Plus |
kat-60L1-RH | 1830 | CG1193-PH | 1..1827 | 17..1831 | 8920 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:59:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kat-60L1-RF | 2172 | CG1193-RF | 139..1953 | 17..1831 | 9075 | 100 | Plus |
kat-60L1-RA | 2301 | CG1193-RA | 139..1953 | 17..1831 | 9075 | 100 | Plus |
kat-60L1-RH | 2313 | CG1193-RH | 139..1965 | 17..1831 | 8920 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:59:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5785440..5786068 | 406..1034 | 3145 | 100 | Plus |
3R | 32079331 | 3R | 5786263..5786739 | 1032..1508 | 2385 | 100 | Plus |
3R | 32079331 | 3R | 5786794..5787117 | 1508..1831 | 1620 | 100 | Plus |
3R | 32079331 | 3R | 5785112..5785381 | 138..407 | 1350 | 100 | Plus |
3R | 32079331 | 3R | 5781900..5782021 | 17..138 | 610 | 100 | Plus |
3R | 32079331 | 3R | 5228408..5228838 | 1504..1074 | 565 | 75.4 | Minus |
Blast to na_te.dros performed 2014-11-28 00:59:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3243..3321 | 497..577 | 120 | 64.2 | Plus |
BO08208.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:16 Download gff for
BO08208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1193-RA | 1..1818 | 17..1832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:19:46 Download gff for
BO08208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1193-RA | 133..1958 | 10..1839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:35:45 Download gff for
BO08208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kat-60L1-RA | 139..1953 | 17..1833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:16 Download gff for
BO08208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1193-RA | 133..1958 | 10..1839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:43 Download gff for
BO08208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kat-60L1-RA | 139..1953 | 17..1833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:43 Download gff for
BO08208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5781900..5782021 | 17..138 | 100 | -> | Plus |
3R | 5785113..5785381 | 139..407 | 100 | -> | Plus |
3R | 5785442..5786067 | 408..1033 | 100 | -> | Plus |
3R | 5786265..5786739 | 1034..1508 | 100 | -> | Plus |
3R | 5786795..5787117 | 1509..1833 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:35:45 Download gff for
BO08208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1607622..1607743 | 17..138 | 100 | -> | Plus |
arm_3R | 1610835..1611103 | 139..407 | 100 | -> | Plus |
arm_3R | 1611164..1611789 | 408..1033 | 100 | -> | Plus |
arm_3R | 1611987..1612461 | 1034..1508 | 100 | -> | Plus |
arm_3R | 1612517..1612839 | 1509..1833 | 99 | | Plus |
BO08208.pep Sequence
Translation from 16 to 1849
> BO08208.pep
MRVEEATYRRTTREKIVLRGNTTIRTVDSTSTYLPVMSPAGSSTPPTSLS
HMARMMDSLILDSLSPFGFTKITATSRPSRNASLKKSSEGGHSSTAERHR
PVNNLGSNAPGGLGIGGSVPLRSKQRLPTQEVAPQPRASQTAQMPFPSQQ
QDNRWVSSLRRRDPELQPTLPSINSNANSSSLSQSHHGSAGNVGLAGAGA
PTPAASMGTMRLGRPARASAMTAALRKSRSVERLRARKLSTNTQLNLKHK
PVKKNSLDENSNSDDQDATTSLEDNSHAQSLATSHNTPKCSPKTKAKHFS
PLGYEVHLVDTLEKDILQRHPCIKWTDVAGLNEAKTILQEAVVLPVIMPE
FFKGIRRPWRGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYR
GESEKLVRLLFEMARFYAPSTIFIDEIDALCASRGSDSEHEASRRFKAEL
LIQMDGLNASMQEEKVIMVLAATNHPWDIDEAFRRRFEKRIYIPLPNEGT
RSALLKLCLKDVCLSPSLNTGIIGDELQGYSGSDISNVCRDASMMAMRRL
ISGRTPDQIKQIRREEVDQPITLQDFQDARLRTKKSVSADDVARFEKWME
EYGSCASFLDH
BO08208.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:45:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kat-60L1-PF | 605 | CG1193-PF | 1..605 | 1..605 | 3095 | 100 | Plus |
kat-60L1-PA | 605 | CG1193-PA | 1..605 | 1..605 | 3095 | 100 | Plus |
kat-60L1-PH | 609 | CG1193-PH | 1..609 | 1..605 | 3080 | 99.3 | Plus |
kat-60L1-PD | 609 | CG1193-PD | 1..609 | 1..605 | 3080 | 99.3 | Plus |
kat-60L1-PC | 669 | CG1193-PC | 106..669 | 42..605 | 2891 | 100 | Plus |