Clone BO08214 Report

Search the DGRC for BO08214

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:82
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptNplp1-RA
Protein status:BO08214.pep: validated full length
Sequenced Size:961

Clone Sequence Records

BO08214.3prime Sequence

927 bp (864 high quality bases) assembled on 2006-01-06

> BO08214.3prime
ATGGTCTAGAAAGCTTGCCAAACGGCTGCGGTGGGTTGACGCAGTCGCTC
GTGTTGGTGGAAGTACCCGGCCTAGGAATCGCTTCTCTGCCCGGCGATAA
TCGTTCCAGTCGAGGTCGGCGTACCCGGCGTAGCTGGGGTACCACCAGTA
GCTCTGCATGGGATCGGCGTAGTCGGGGGCGGCCGCGGGCAACAGCATCT
CTTCATCCTCGCGCTTCTGCTGCACTCCGTGGACCGGCGAGGACTTCAGA
GCTCCCAGGTTACGTTTCTCGGCCCCAGCACGCTGGATGTGACCGTGCTG
CGAGTTGTAGCGTGCGACGGCGGCCACATTGCGCTTTGGATCTCGGTGGG
TGGAGGGAGCACTCTGCAGACGGGCCATAGTTGCGATGTTTCGCTTGCCG
TTGGGAATAGGCAGCTGGAAGTCGCGGGCCAGGGTGCCCACGTTGCGCTT
TCCATATGTCATCAATCCGCCGGCCCTGGCCAAGGAGCCGATGTAGCGCT
TCTGTTCACTCGGTTCTCCGGAGTCCGCGTCGCCGTAATCCTCTCCAGGC
TCTGCCGTGGGCAGTTGCCCGTTTTTAGCCAGAGTGGCCAAGCTTCTCTT
CGGAGCGTTAAGGAGGCCTTGGGCGGCCAGTGCGGCCACCGAACGTTTGT
CCTCCTCCAGATAATCGGGGTACTCGCCCAAAGGCTGTTCTTCGCCCACG
GCCAACTGTCTTTCCCGAAGTAAGTTTTTCAGTTGATTGCGCAATGCGGA
GGCGTGAAGCTGGTACTCGGGACTGGGGCTCATCAGTTGATTTATAAGGG
ACTCCATTTCGCACGGCGACACATTGGCGACATCATCAGTAGCACTCACA
ATAATGGACCGTGGCTGAATAGCGGCATTGAGCAGCATGAAGAGCAACAG
CATTAGCCGCCTGCTGCTGTGCGCAGA

BO08214.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG3441-PA 930 Nplp1-RA 19..927 927..19 4520 99.8 Minus
CG3441-PB 1143 Nplp1-RB 19..874 927..72 4255 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:07:14
Subject Length Description Subject Range Query Range Score Percent Strand
Nplp1-RA 2044 CG3441-RA 250..1158 927..19 4530 99.9 Minus
Nplp1-RC 2695 CG3441-RC 250..1105 927..72 4265 99.9 Minus
Nplp1-RB 2313 CG3441-RB 250..1105 927..72 4265 99.9 Minus
Nplp1-RC 2695 CG3441-RC 1369..1421 71..19 265 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:07:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 25036845..25037531 757..71 3420 99.9 Minus
2R 25286936 2R 25036593..25036713 873..753 605 100 Minus
2R 25286936 2R 25039049..25039103 73..19 275 100 Minus
2R 25286936 2R 25032626..25032680 927..873 260 98.2 Minus
Blast to na_te.dros performed on 2015-02-13 07:07:12 has no hits.

BO08214.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:07 Download gff for BO08214.3prime
Subject Subject Range Query Range Percent Splice Strand
Nplp1-PA 20..930 15..926 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:32:51 Download gff for BO08214.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3441-PA 20..930 15..926 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:11:20 Download gff for BO08214.3prime
Subject Subject Range Query Range Percent Splice Strand
Nplp1-RA 251..1163 13..926 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:26:05 Download gff for BO08214.3prime
Subject Subject Range Query Range Percent Splice Strand
Nplp1-RA 251..1163 13..926 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:26:05 Download gff for BO08214.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 25039051..25039108 13..71 96   Minus
2R 25032627..25032679 874..926 98 -> Minus
2R 25036593..25036712 754..873 100 -> Minus
2R 25036849..25037530 72..753 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:11:20 Download gff for BO08214.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20920150..20920202 874..926 98 -> Minus
arm_2R 20924116..20924235 754..873 100 -> Minus
arm_2R 20924372..20925053 72..753 100 -> Minus
arm_2R 20926574..20926631 13..71 96   Minus

BO08214.5prime Sequence

858 bp (805 high quality bases) assembled on 2006-01-06

> BO08214.5prime
GAAGTTATCAGTCGACATGCAGGCGGTGCTCCAATCTGCGCACAGCAGCA
GGCGGCTAATGCTGTTGCTCTCCATGCTGCTCAATGCCGCTATTCAGCCA
CGGTCCATTATTGTGAGTGCTACTGATGATGTCGCCAATGTGTCGCCGTG
CGAAATGGAGTCCCTTATAAATCAACTGATGAGCCCCAGTCCCGAGTACC
AGCTTCACGCCTCCGCATTGCGCAATCAACTGAAAAACTTACTTCGGGAA
AGACAGTTGGCCGTGGGCGAAGAACAGCCTTTGGGCGAGTACCCCGATTA
TCTGGAGGAGGACAAACGTTCGGTGGCCGCACTGGCCGCCCAAGGCCTCC
TTAACGCTCCGAAGAGAAGCTTGGCCACTCTGGCTAAAAACGGGCAACTG
CCCACGGCAGAGCCTGGAGAGGATTACGGCGACGCGGACTCCGGAGAACC
GAGTGAACAGAAGCGCTACATCGGCTCCTTGGCCAGGGCCGGCGGATTGA
TGACATATGGAAAGCGCAACGTGGGCACCCTGGCCCGCGACTTCCAGCTG
CCTATTCCCAACGGCAAGCGAAACATCGCAACTATGGCCCGTCTGCAGAG
TGCTCCCTCCACCCACCGAGATCCAAAGCGCAATGTGGCCGCCGTCGCAC
GCTACAACTCGCAGCACGGTCACATCCAGCGTGCTGGGGCCGAGAAACGT
AACCTGGGAGCTCTGAAGTCCTCGCCGGTCCACGGAGTGCAGCAGAAGCG
CGAGGATGAAGAGATGCTGTTGCCCGCGGCCGCCCCCGACTACGCCGATC
CCATGCAGAGCTACTGGTGGTACCCCAGCTACGCCGGGTACGCCGACCTC
GACTGGAA

BO08214.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG3441-PA 930 Nplp1-RA 1..842 17..858 4210 100 Plus
CG3441-PB 1143 Nplp1-RB 1..842 17..858 4210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:37:13
Subject Length Description Subject Range Query Range Score Percent Strand
Nplp1-RC 2695 CG3441-RC 232..1073 17..858 4210 100 Plus
Nplp1-RB 2313 CG3441-RB 232..1073 17..858 4210 100 Plus
Nplp1-RA 2044 CG3441-RA 232..1073 17..858 4210 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:37:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 25036845..25037498 205..858 3255 99.8 Plus
2R 25286936 2R 25036593..25036713 89..209 605 100 Plus
2R 25286936 2R 25032608..25032680 17..89 365 100 Plus
Blast to na_te.dros performed on 2015-02-13 16:37:12 has no hits.

BO08214.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:08 Download gff for BO08214.5prime
Subject Subject Range Query Range Percent Splice Strand
Nplp1-PA 1..840 17..856 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:32:52 Download gff for BO08214.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3441-PB 1..840 17..856 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:14:14 Download gff for BO08214.5prime
Subject Subject Range Query Range Percent Splice Strand
Nplp1-RA 224..1073 9..858 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 19:25:51 Download gff for BO08214.5prime
Subject Subject Range Query Range Percent Splice Strand
Nplp1-RA 224..1073 9..858 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 19:25:51 Download gff for BO08214.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 25032600..25032679 9..88 96 -> Plus
2R 25036593..25036712 89..208 100 -> Plus
2R 25036849..25037498 209..858 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:14:14 Download gff for BO08214.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20920123..20920202 9..88 96 -> Plus
arm_2R 20924116..20924235 89..208 100 -> Plus
arm_2R 20924372..20925021 209..858 100   Plus

BO08214.complete Sequence

961 bp (961 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ631099

> BO08214.complete
GAAGTTATCAGTCGACATGCAGGCGGTGCTCCAATCTGCGCACAGCAGCA
GGCGGCTAATGCTGTTGCTCTCCATGCTGCTCAATGCCGCTATTCAGCCA
CGGTCCATTATTGTGAGTGCTACTGATGATGTCGCCAATGTGTCGCCGTG
CGAAATGGAGTCCCTTATAAATCAACTGATGAGCCCCAGTCCCGAGTACC
AGCTTCACGCCTCCGCATTGCGCAATCAACTGAAAAACTTACTTCGGGAA
AGACAGTTGGCCGTGGGCGAAGAACAGCCTTTGGGCGAGTACCCCGATTA
TCTGGAGGAGGACAAACGTTCGGTGGCCGCACTGGCCGCCCAAGGCCTCC
TTAACGCTCCGAAGAGAAGCTTGGCCACTCTGGCTAAAAACGGGCAACTG
CCCACGGCAGAGCCTGGAGAGGATTACGGCGACGCGGACTCCGGAGAACC
GAGTGAACAGAAGCGCTACATCGGCTCCTTGGCCAGGGCCGGCGGATTGA
TGACATATGGAAAGCGCAACGTGGGCACCCTGGCCCGCGACTTCCAGCTG
CCTATTCCCAACGGCAAGCGAAACATCGCAACTATGGCCCGTCTGCAGAG
TGCTCCCTCCACCCACCGAGATCCAAAGCGCAATGTGGCCGCCGTCGCAC
GCTACAACTCGCAGCACGGTCACATCCAGCGTGCTGGGGCCGAGAAACGT
AACCTGGGAGCTCTGAAGTCCTCGCCGGTCCACGGAGTGCAGCAGAAGCG
CGAGGATGAAGAGATGCTGTTGCCCGCGGCCGCCCCCGACTACGCCGATC
CCATGCAGAGCTACTGGTGGTACCCCAGCTACGCCGGGTACGCCGACCTC
GACTGGAACGATTATCGCCGGGCAGAGAAGCGATTCCTAGGCCGGGTACT
TCCACCAACACGAGCGACTGCGTCAACCCACCGCAGCCGTTTGGCAAGCT
TTCTAGACCAT

BO08214.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:38:55
Subject Length Description Subject Range Query Range Score Percent Strand
Nplp1-RA 930 CG3441-PA 1..927 17..943 4635 100 Plus
Nplp1-RC 1464 CG3441-PC 1..874 17..890 4370 100 Plus
Nplp1-RB 1143 CG3441-PB 1..874 17..890 4370 100 Plus
Nplp1-RC 1464 CG3441-PC 1138..1190 891..943 265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:38:57
Subject Length Description Subject Range Query Range Score Percent Strand
Nplp1-RA 2044 CG3441-RA 232..1158 17..943 4635 100 Plus
Nplp1-RC 2695 CG3441-RC 232..1105 17..890 4370 100 Plus
Nplp1-RB 2313 CG3441-RB 232..1105 17..890 4370 100 Plus
Nplp1-RC 2695 CG3441-RC 1369..1421 891..943 265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 25036845..25037531 205..891 3420 99.9 Plus
2R 25286936 2R 25036593..25036713 89..209 605 100 Plus
2R 25286936 2R 25032608..25032680 17..89 365 100 Plus
2R 25286936 2R 25039049..25039103 889..943 275 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:38:55 has no hits.

BO08214.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:04 Download gff for BO08214.complete
Subject Subject Range Query Range Percent Splice Strand
Nplp1-RA 1..930 17..947 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:30:21 Download gff for BO08214.complete
Subject Subject Range Query Range Percent Splice Strand
Nplp1-RA 221..1160 9..949 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:13 Download gff for BO08214.complete
Subject Subject Range Query Range Percent Splice Strand
Nplp1-RA 232..1158 17..945 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:04 Download gff for BO08214.complete
Subject Subject Range Query Range Percent Splice Strand
Nplp1-RA 221..1160 9..949 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:28 Download gff for BO08214.complete
Subject Subject Range Query Range Percent Splice Strand
Nplp1-RA 232..1158 17..945 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:28 Download gff for BO08214.complete
Subject Subject Range Query Range Percent Splice Strand
2R 25032608..25032679 17..88 100 -> Plus
2R 25036593..25036712 89..208 100 -> Plus
2R 25036849..25037530 209..890 100 -> Plus
2R 25039051..25039103 891..945 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:13 Download gff for BO08214.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20924116..20924235 89..208 100 -> Plus
arm_2R 20920131..20920202 17..88 100 -> Plus
arm_2R 20924372..20925053 209..890 100 -> Plus
arm_2R 20926574..20926626 891..945 96   Plus

BO08214.pep Sequence

Translation from 16 to 961

> BO08214.pep
MQAVLQSAHSSRRLMLLLSMLLNAAIQPRSIIVSATDDVANVSPCEMESL
INQLMSPSPEYQLHASALRNQLKNLLRERQLAVGEEQPLGEYPDYLEEDK
RSVAALAAQGLLNAPKRSLATLAKNGQLPTAEPGEDYGDADSGEPSEQKR
YIGSLARAGGLMTYGKRNVGTLARDFQLPIPNGKRNIATMARLQSAPSTH
RDPKRNVAAVARYNSQHGHIQRAGAEKRNLGALKSSPVHGVQQKREDEEM
LLPAAAPDYADPMQSYWWYPSYAGYADLDWNDYRRAEKRFLGRVLPPTRA
TASTHRSRLASFLDH

BO08214.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:37:40
Subject Length Description Subject Range Query Range Score Percent Strand
Nplp1-PA 309 CG3441-PA 1..309 1..309 1586 100 Plus
Nplp1-PB 380 CG3441-PB 1..291 1..291 1495 100 Plus
Nplp1-PC 487 CG3441-PC 1..291 1..291 1495 100 Plus