Clone Sequence Records
BO08214.3prime Sequence
927 bp (864 high quality bases) assembled on 2006-01-06
> BO08214.3prime
ATGGTCTAGAAAGCTTGCCAAACGGCTGCGGTGGGTTGACGCAGTCGCTC
GTGTTGGTGGAAGTACCCGGCCTAGGAATCGCTTCTCTGCCCGGCGATAA
TCGTTCCAGTCGAGGTCGGCGTACCCGGCGTAGCTGGGGTACCACCAGTA
GCTCTGCATGGGATCGGCGTAGTCGGGGGCGGCCGCGGGCAACAGCATCT
CTTCATCCTCGCGCTTCTGCTGCACTCCGTGGACCGGCGAGGACTTCAGA
GCTCCCAGGTTACGTTTCTCGGCCCCAGCACGCTGGATGTGACCGTGCTG
CGAGTTGTAGCGTGCGACGGCGGCCACATTGCGCTTTGGATCTCGGTGGG
TGGAGGGAGCACTCTGCAGACGGGCCATAGTTGCGATGTTTCGCTTGCCG
TTGGGAATAGGCAGCTGGAAGTCGCGGGCCAGGGTGCCCACGTTGCGCTT
TCCATATGTCATCAATCCGCCGGCCCTGGCCAAGGAGCCGATGTAGCGCT
TCTGTTCACTCGGTTCTCCGGAGTCCGCGTCGCCGTAATCCTCTCCAGGC
TCTGCCGTGGGCAGTTGCCCGTTTTTAGCCAGAGTGGCCAAGCTTCTCTT
CGGAGCGTTAAGGAGGCCTTGGGCGGCCAGTGCGGCCACCGAACGTTTGT
CCTCCTCCAGATAATCGGGGTACTCGCCCAAAGGCTGTTCTTCGCCCACG
GCCAACTGTCTTTCCCGAAGTAAGTTTTTCAGTTGATTGCGCAATGCGGA
GGCGTGAAGCTGGTACTCGGGACTGGGGCTCATCAGTTGATTTATAAGGG
ACTCCATTTCGCACGGCGACACATTGGCGACATCATCAGTAGCACTCACA
ATAATGGACCGTGGCTGAATAGCGGCATTGAGCAGCATGAAGAGCAACAG
CATTAGCCGCCTGCTGCTGTGCGCAGA
BO08214.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3441-PA | 930 | Nplp1-RA | 19..927 | 927..19 | 4520 | 99.8 | Minus |
CG3441-PB | 1143 | Nplp1-RB | 19..874 | 927..72 | 4255 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:07:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nplp1-RA | 2044 | CG3441-RA | 250..1158 | 927..19 | 4530 | 99.9 | Minus |
Nplp1-RC | 2695 | CG3441-RC | 250..1105 | 927..72 | 4265 | 99.9 | Minus |
Nplp1-RB | 2313 | CG3441-RB | 250..1105 | 927..72 | 4265 | 99.9 | Minus |
Nplp1-RC | 2695 | CG3441-RC | 1369..1421 | 71..19 | 265 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:07:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 25036845..25037531 | 757..71 | 3420 | 99.9 | Minus |
2R | 25286936 | 2R | 25036593..25036713 | 873..753 | 605 | 100 | Minus |
2R | 25286936 | 2R | 25039049..25039103 | 73..19 | 275 | 100 | Minus |
2R | 25286936 | 2R | 25032626..25032680 | 927..873 | 260 | 98.2 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:07:12 has no hits.
BO08214.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:07 Download gff for
BO08214.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nplp1-PA | 20..930 | 15..926 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:32:51 Download gff for
BO08214.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3441-PA | 20..930 | 15..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:11:20 Download gff for
BO08214.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nplp1-RA | 251..1163 | 13..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:26:05 Download gff for
BO08214.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nplp1-RA | 251..1163 | 13..926 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:26:05 Download gff for
BO08214.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 25039051..25039108 | 13..71 | 96 | | Minus |
2R | 25032627..25032679 | 874..926 | 98 | -> | Minus |
2R | 25036593..25036712 | 754..873 | 100 | -> | Minus |
2R | 25036849..25037530 | 72..753 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:11:20 Download gff for
BO08214.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20920150..20920202 | 874..926 | 98 | -> | Minus |
arm_2R | 20924116..20924235 | 754..873 | 100 | -> | Minus |
arm_2R | 20924372..20925053 | 72..753 | 100 | -> | Minus |
arm_2R | 20926574..20926631 | 13..71 | 96 | | Minus |
BO08214.5prime Sequence
858 bp (805 high quality bases) assembled on 2006-01-06
> BO08214.5prime
GAAGTTATCAGTCGACATGCAGGCGGTGCTCCAATCTGCGCACAGCAGCA
GGCGGCTAATGCTGTTGCTCTCCATGCTGCTCAATGCCGCTATTCAGCCA
CGGTCCATTATTGTGAGTGCTACTGATGATGTCGCCAATGTGTCGCCGTG
CGAAATGGAGTCCCTTATAAATCAACTGATGAGCCCCAGTCCCGAGTACC
AGCTTCACGCCTCCGCATTGCGCAATCAACTGAAAAACTTACTTCGGGAA
AGACAGTTGGCCGTGGGCGAAGAACAGCCTTTGGGCGAGTACCCCGATTA
TCTGGAGGAGGACAAACGTTCGGTGGCCGCACTGGCCGCCCAAGGCCTCC
TTAACGCTCCGAAGAGAAGCTTGGCCACTCTGGCTAAAAACGGGCAACTG
CCCACGGCAGAGCCTGGAGAGGATTACGGCGACGCGGACTCCGGAGAACC
GAGTGAACAGAAGCGCTACATCGGCTCCTTGGCCAGGGCCGGCGGATTGA
TGACATATGGAAAGCGCAACGTGGGCACCCTGGCCCGCGACTTCCAGCTG
CCTATTCCCAACGGCAAGCGAAACATCGCAACTATGGCCCGTCTGCAGAG
TGCTCCCTCCACCCACCGAGATCCAAAGCGCAATGTGGCCGCCGTCGCAC
GCTACAACTCGCAGCACGGTCACATCCAGCGTGCTGGGGCCGAGAAACGT
AACCTGGGAGCTCTGAAGTCCTCGCCGGTCCACGGAGTGCAGCAGAAGCG
CGAGGATGAAGAGATGCTGTTGCCCGCGGCCGCCCCCGACTACGCCGATC
CCATGCAGAGCTACTGGTGGTACCCCAGCTACGCCGGGTACGCCGACCTC
GACTGGAA
BO08214.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3441-PA | 930 | Nplp1-RA | 1..842 | 17..858 | 4210 | 100 | Plus |
CG3441-PB | 1143 | Nplp1-RB | 1..842 | 17..858 | 4210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:37:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nplp1-RC | 2695 | CG3441-RC | 232..1073 | 17..858 | 4210 | 100 | Plus |
Nplp1-RB | 2313 | CG3441-RB | 232..1073 | 17..858 | 4210 | 100 | Plus |
Nplp1-RA | 2044 | CG3441-RA | 232..1073 | 17..858 | 4210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:37:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 25036845..25037498 | 205..858 | 3255 | 99.8 | Plus |
2R | 25286936 | 2R | 25036593..25036713 | 89..209 | 605 | 100 | Plus |
2R | 25286936 | 2R | 25032608..25032680 | 17..89 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:37:12 has no hits.
BO08214.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:08 Download gff for
BO08214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nplp1-PA | 1..840 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:32:52 Download gff for
BO08214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3441-PB | 1..840 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:14:14 Download gff for
BO08214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nplp1-RA | 224..1073 | 9..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 19:25:51 Download gff for
BO08214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nplp1-RA | 224..1073 | 9..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 19:25:51 Download gff for
BO08214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 25032600..25032679 | 9..88 | 96 | -> | Plus |
2R | 25036593..25036712 | 89..208 | 100 | -> | Plus |
2R | 25036849..25037498 | 209..858 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:14:14 Download gff for
BO08214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20920123..20920202 | 9..88 | 96 | -> | Plus |
arm_2R | 20924116..20924235 | 89..208 | 100 | -> | Plus |
arm_2R | 20924372..20925021 | 209..858 | 100 | | Plus |
BO08214.complete Sequence
961 bp (961 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631099
> BO08214.complete
GAAGTTATCAGTCGACATGCAGGCGGTGCTCCAATCTGCGCACAGCAGCA
GGCGGCTAATGCTGTTGCTCTCCATGCTGCTCAATGCCGCTATTCAGCCA
CGGTCCATTATTGTGAGTGCTACTGATGATGTCGCCAATGTGTCGCCGTG
CGAAATGGAGTCCCTTATAAATCAACTGATGAGCCCCAGTCCCGAGTACC
AGCTTCACGCCTCCGCATTGCGCAATCAACTGAAAAACTTACTTCGGGAA
AGACAGTTGGCCGTGGGCGAAGAACAGCCTTTGGGCGAGTACCCCGATTA
TCTGGAGGAGGACAAACGTTCGGTGGCCGCACTGGCCGCCCAAGGCCTCC
TTAACGCTCCGAAGAGAAGCTTGGCCACTCTGGCTAAAAACGGGCAACTG
CCCACGGCAGAGCCTGGAGAGGATTACGGCGACGCGGACTCCGGAGAACC
GAGTGAACAGAAGCGCTACATCGGCTCCTTGGCCAGGGCCGGCGGATTGA
TGACATATGGAAAGCGCAACGTGGGCACCCTGGCCCGCGACTTCCAGCTG
CCTATTCCCAACGGCAAGCGAAACATCGCAACTATGGCCCGTCTGCAGAG
TGCTCCCTCCACCCACCGAGATCCAAAGCGCAATGTGGCCGCCGTCGCAC
GCTACAACTCGCAGCACGGTCACATCCAGCGTGCTGGGGCCGAGAAACGT
AACCTGGGAGCTCTGAAGTCCTCGCCGGTCCACGGAGTGCAGCAGAAGCG
CGAGGATGAAGAGATGCTGTTGCCCGCGGCCGCCCCCGACTACGCCGATC
CCATGCAGAGCTACTGGTGGTACCCCAGCTACGCCGGGTACGCCGACCTC
GACTGGAACGATTATCGCCGGGCAGAGAAGCGATTCCTAGGCCGGGTACT
TCCACCAACACGAGCGACTGCGTCAACCCACCGCAGCCGTTTGGCAAGCT
TTCTAGACCAT
BO08214.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:38:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nplp1-RA | 930 | CG3441-PA | 1..927 | 17..943 | 4635 | 100 | Plus |
Nplp1-RC | 1464 | CG3441-PC | 1..874 | 17..890 | 4370 | 100 | Plus |
Nplp1-RB | 1143 | CG3441-PB | 1..874 | 17..890 | 4370 | 100 | Plus |
Nplp1-RC | 1464 | CG3441-PC | 1138..1190 | 891..943 | 265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:38:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nplp1-RA | 2044 | CG3441-RA | 232..1158 | 17..943 | 4635 | 100 | Plus |
Nplp1-RC | 2695 | CG3441-RC | 232..1105 | 17..890 | 4370 | 100 | Plus |
Nplp1-RB | 2313 | CG3441-RB | 232..1105 | 17..890 | 4370 | 100 | Plus |
Nplp1-RC | 2695 | CG3441-RC | 1369..1421 | 891..943 | 265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:38:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 25036845..25037531 | 205..891 | 3420 | 99.9 | Plus |
2R | 25286936 | 2R | 25036593..25036713 | 89..209 | 605 | 100 | Plus |
2R | 25286936 | 2R | 25032608..25032680 | 17..89 | 365 | 100 | Plus |
2R | 25286936 | 2R | 25039049..25039103 | 889..943 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:38:55 has no hits.
BO08214.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:04 Download gff for
BO08214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nplp1-RA | 1..930 | 17..947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:30:21 Download gff for
BO08214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nplp1-RA | 221..1160 | 9..949 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:13 Download gff for
BO08214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nplp1-RA | 232..1158 | 17..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:04 Download gff for
BO08214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nplp1-RA | 221..1160 | 9..949 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:28 Download gff for
BO08214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nplp1-RA | 232..1158 | 17..945 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:28 Download gff for
BO08214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 25032608..25032679 | 17..88 | 100 | -> | Plus |
2R | 25036593..25036712 | 89..208 | 100 | -> | Plus |
2R | 25036849..25037530 | 209..890 | 100 | -> | Plus |
2R | 25039051..25039103 | 891..945 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:13 Download gff for
BO08214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20924116..20924235 | 89..208 | 100 | -> | Plus |
arm_2R | 20920131..20920202 | 17..88 | 100 | -> | Plus |
arm_2R | 20924372..20925053 | 209..890 | 100 | -> | Plus |
arm_2R | 20926574..20926626 | 891..945 | 96 | | Plus |
BO08214.pep Sequence
Translation from 16 to 961
> BO08214.pep
MQAVLQSAHSSRRLMLLLSMLLNAAIQPRSIIVSATDDVANVSPCEMESL
INQLMSPSPEYQLHASALRNQLKNLLRERQLAVGEEQPLGEYPDYLEEDK
RSVAALAAQGLLNAPKRSLATLAKNGQLPTAEPGEDYGDADSGEPSEQKR
YIGSLARAGGLMTYGKRNVGTLARDFQLPIPNGKRNIATMARLQSAPSTH
RDPKRNVAAVARYNSQHGHIQRAGAEKRNLGALKSSPVHGVQQKREDEEM
LLPAAAPDYADPMQSYWWYPSYAGYADLDWNDYRRAEKRFLGRVLPPTRA
TASTHRSRLASFLDH
BO08214.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:37:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nplp1-PA | 309 | CG3441-PA | 1..309 | 1..309 | 1586 | 100 | Plus |
Nplp1-PB | 380 | CG3441-PB | 1..291 | 1..291 | 1495 | 100 | Plus |
Nplp1-PC | 487 | CG3441-PC | 1..291 | 1..291 | 1495 | 100 | Plus |