Clone Sequence Records
BO08215.3prime Sequence
919 bp (768 high quality bases) assembled on 2006-01-06
> BO08215.3prime
ATGGTCTAGAAAGCTTGCAAGATCCTGCATGGCCAGAATGATGTTCTCCA
GAGCCTGTCGAGCGTCCGTCGCCGGGAAATGTTGCAGAACGGCCAGGGCA
GCGGCTGTGTGCTTCCGCTGCAGTTCCTTGGTTTTGGCCAAAGCCGGCCC
GGCCAGAATGGCCTTGTGGATCTTGTCGTAGTCGATGTTATCGACCGACT
GCTTGCCAGCCTCCAATTGAGAATACATGCCAGGGTCGTGCTCCAAGTGG
AATAGGACTGGAGCACTAACCAGACTGAAAGTAACATCTAGCGGCAGTTG
GGGGCACTGAAAAGGTTCGGCATCCAAGCAAGCCTGCCAAGCGAGCGCCA
AATGTTTGCCAAAGCGGTAAGCATGTCGCTGCAGTTCCTCACTCTGTCCG
GCCAGCTTTAGCGAAGCTTGGCAGGATTTGCCCAGCAGGCTACCCGCATT
AAGGATATTACGGCACTCCCATTCCTCCTCCGGATTGCCGAGAACCTGGG
CAATCGGCATTGGCGTCATCACGTCGTGCTCGTTGAAATCCACTCCAACG
CTGAGAGATGGTCGCTGGAAGGTTCCTGGCTTATAAGGCAGCGGGTTGTT
CTGTTCATCACGCTCTCCAATGAATTCCGACTCGGAAAAATCTCGCACCG
CCGACGAGATCAGCTCCACCACCTCCTGGTTGCGCAGATTAGCCAGCTCC
GCACTGGAATGGCCCAGAAGATAGTCGCCGGTCAGCAGGCCGATCTTGTT
GCCAAACGACATGTCGTCGTAGGTGTCCACATCCTGCCCAGCCTGCGTGC
TCGATTGCAGATTAACCACGCTATTGTGCACCAGATGAGATATCCGTATC
ATCTCGGTGACCTCGGCCAAAGCCCTTTGGGAGTGCAGCACTCCGGCACT
CTTGTCCCTGCTCACGTCT
BO08215.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10585-PA | 1347 | CG10585-RA | 456..1344 | 907..19 | 4445 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:55:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10585-RB | 1699 | CG10585-RB | 546..1446 | 919..19 | 4460 | 99.8 | Minus |
CG10585-RA | 1990 | CG10585-RA | 837..1737 | 919..19 | 4460 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 14:54:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21029085..21029888 | 822..19 | 4020 | 100 | Minus |
3L | 28110227 | 3L | 21028821..21028905 | 907..823 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 14:54:59 has no hits.
BO08215.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:09 Download gff for
BO08215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10585-PA | 444..1347 | 16..919 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:32:53 Download gff for
BO08215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10585-PA | 444..1347 | 16..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:14:15 Download gff for
BO08215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10585-RA | 837..1737 | 19..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:31:57 Download gff for
BO08215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10585-RA | 837..1737 | 19..919 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:31:57 Download gff for
BO08215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21028809..21028905 | 823..919 | 97 | -> | Minus |
3L | 21029085..21029888 | 19..822 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:14:15 Download gff for
BO08215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21021909..21022005 | 823..919 | 97 | -> | Minus |
arm_3L | 21022185..21022988 | 19..822 | 100 | | Minus |
BO08215.5prime Sequence
897 bp (862 high quality bases) assembled on 2006-01-06
> BO08215.5prime
GAAGTTATCAGTCGACATGGCCATGTACCGCGCCAGTGGGTTAAGGATTA
TGCAACAGATGCGACGCAGGATTCCCGTCGAACTGCAGCCACTCCAAGTG
GCCAAAGCTGCGCCTGCGCTGCAAACTTTCACTTCTCAGCGCTGGACTTC
GACGACGACGACCAGTGGAAAGCATGCCAGTCCACAGGTTACGACCCCGC
CCCCGAGACACGACTGGAATAGGGCGGTCAGCGAGGCGGAGCGCATCGTC
GGCTATCCCACATCCTTCCTCAGTCTGCGCTGGCTGCTCAGCGACGAGAT
CGCCAATGTGGCGCTGCACCTGCGCAAACTGGTGGGCAGCGCCCATCCGC
TGATGAAGACGGCCAAGCACCTGCTCTACAATGGCAAGAACACGATGCAA
GCCTGGGGATTGATAGTGCTCCTGGTGTCCAAGGCCGCAGGACATGCACC
CAGTGTTCCAGACGTGGAGCAGGACAAGAGTGCCGGAGTGCTGCACTCCC
AAAGGGCTTTGGCCGAGGTCACCGAGATGATACGGATATCTCATCTGGTG
CACAATAGCGTGGTTAATCTGCAATCGAGCACGCAGGCTGGGCAGGATGT
GGACACCTACGACGACATGTCGTTTGGCAACAAGATCGGCCTGCTGACCG
GCGACTATCTTCTGGGCCATTCCAGTGCGGAGCTGGCTAATCTGCGCAAC
CAGGAGGTGGTGGAGCTGATCTCGTCGGCGGTGCGAGATTTTTCCGAGTC
GGAATTCATTGGAGAGCGTGATGAACAGAACAACCCGCTGCCTTATAAGC
CAGGAACCTTCCAGCGACCATCTCTCAGCGTTGGAGTGGATTTCAACGAG
CACGACGTGATGACGCCNATGCCGATTGGCCAGGTTCTCGGCAATCC
BO08215.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10585-PA | 1347 | CG10585-RA | 1..881 | 17..897 | 4361 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:41:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10585-RB | 1699 | CG10585-RB | 103..983 | 17..897 | 4379 | 99.8 | Plus |
CG10585-RA | 1990 | CG10585-RA | 394..1274 | 17..897 | 4379 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:41:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21028308..21028658 | 17..367 | 1755 | 100 | Plus |
3L | 28110227 | 3L | 21029085..21029425 | 557..897 | 1679 | 99.4 | Plus |
3L | 28110227 | 3L | 21028716..21028905 | 367..556 | 950 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:41:33 has no hits.
BO08215.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:10 Download gff for
BO08215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10585-PA | 1..881 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:32:55 Download gff for
BO08215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10585-PA | 1..881 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:06:36 Download gff for
BO08215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10585-RA | 394..1274 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:58:13 Download gff for
BO08215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10585-RA | 394..1274 | 17..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:58:13 Download gff for
BO08215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21028308..21028657 | 17..366 | 100 | -> | Plus |
3L | 21028716..21028905 | 367..556 | 100 | -> | Plus |
3L | 21029085..21029425 | 557..897 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:06:36 Download gff for
BO08215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21021816..21022005 | 367..556 | 100 | -> | Plus |
arm_3L | 21021408..21021757 | 17..366 | 100 | -> | Plus |
arm_3L | 21022185..21022525 | 557..897 | 99 | | Plus |
BO08215.complete Sequence
1378 bp (1378 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631100
> BO08215.complete
GAAGTTATCAGTCGACATGGCCATGTACCGCGCCAGTGGGTTAAGGATTA
TGCAACAGATGCGACGCAGGATTCCCGTCGAACTGCAGCCACTCCAAGTG
GCCAAAGCTGCGCCTGCGCTGCAAACTTTCACTTCTCAGCGCTGGACTTC
GACGACGACGACCAGTGGAAAGCATGCCAGTCCACAGGTTACGACCCCGC
CCCCGAGACACGACTGGAATAGGGCGGTCAGCGAGGCGGAGCGCATCGTC
GGCTATCCCACATCCTTCCTCAGTCTGCGCTGGCTGCTCAGCGACGAGAT
CGCCAATGTGGCGCTGCACCTGCGCAAACTGGTGGGCAGCGCCCATCCGC
TGATGAAGACGGCCAAGCACCTGCTCTACAATGGCAAGAACACGATGCAA
GCCTGGGGATTGATAGTGCTCCTGGTGTCCAAGGCCGCAGGACATGCACC
CAGTGTTCCAGACGTGGAGCAGGACAAGAGTGCCGGAGTGCTGCACTCCC
AAAGGGCTTTGGCCGAGGTCACCGAGATGATACGGATATCTCATCTGGTG
CACAATAGCGTGGTTAATCTGCAATCGAGCACGCAGGCTGGGCAGGATGT
GGACACCTACGACGACATGTCGTTTGGCAACAAGATCGGCCTGCTGACCG
GCGACTATCTTCTGGGCCATTCCAGTGCGGAGCTGGCTAATCTGCGCAAC
CAGGAGGTGGTGGAGCTGATCTCGTCGGCGGTGCGAGATTTTTCCGAGTC
GGAATTCATTGGAGAGCGTGATGAACAGAACAACCCGCTGCCTTATAAGC
CAGGAACCTTCCAGCGACCATCTCTCAGCGTTGGAGTGGATTTCAACGAG
CACGACGTGATGACGCCAATGCCGATTGCCCAGGTTCTCGGCAATCCGGA
GGAGGAATGGGAGTGCCGTAATATCCTTAATGCGGGTAGCCTGCTGGGCA
AATCCTGCCAAGCTTCGCTAAAGCTGGCCGGACAGAGTGAGGAACTGCAG
CGACATGCTTACCGCTTTGGCAAACATTTGGCGCTCGCTTGGCAGGCTTG
CTTGGATGCCGAACCTTTTCAGTGCCCCCAACTGCCGCTAGATGTTACTT
TCAGTCTGGTTAGTGCTCCAGTCCTATTCCACTTGGAGCACGACCCTGGC
ATGTATTCTCAATTGGAGGCTGGCAAGCAGTCGGTCGATAACATCGACTA
CGACAAGATCCACAAGGCCATTCTGGCCGGGCCGGCTTTGGCCAAAACCA
AGGAACTGCAGCGGAAGCACACAGCCGCTGCCCTGGCCGTTCTGCAACAT
TTCCCGGCGACGGACGCTCGACAGGCTCTGGAGAACATCATTCTGGCCAT
GCAGGATCTTGCAAGCTTTCTAGACCAT
BO08215.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:35:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10585-RB | 1347 | CG10585-PB | 1..1344 | 17..1360 | 6720 | 100 | Plus |
CG10585-RA | 1347 | CG10585-PA | 1..1344 | 17..1360 | 6720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:35:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10585-RB | 1699 | CG10585-RB | 103..1446 | 17..1360 | 6720 | 100 | Plus |
CG10585-RA | 1990 | CG10585-RA | 394..1737 | 17..1360 | 6720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:35:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21029085..21029888 | 557..1360 | 4020 | 100 | Plus |
3L | 28110227 | 3L | 21028308..21028658 | 17..367 | 1755 | 100 | Plus |
3L | 28110227 | 3L | 21028716..21028905 | 367..556 | 950 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:35:09 has no hits.
BO08215.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:09 Download gff for
BO08215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10585-RA | 1..1347 | 17..1363 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:31:53 Download gff for
BO08215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10585-RA | 414..1757 | 17..1360 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:55:09 Download gff for
BO08215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10585-RA | 394..1737 | 17..1362 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:10 Download gff for
BO08215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10585-RA | 414..1757 | 17..1360 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:04 Download gff for
BO08215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10585-RA | 394..1737 | 17..1362 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:04 Download gff for
BO08215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21028308..21028657 | 17..366 | 100 | -> | Plus |
3L | 21028716..21028905 | 367..556 | 100 | -> | Plus |
3L | 21029085..21029888 | 557..1362 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:55:09 Download gff for
BO08215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21021408..21021757 | 17..366 | 100 | -> | Plus |
arm_3L | 21021816..21022005 | 367..556 | 100 | -> | Plus |
arm_3L | 21022185..21022988 | 557..1362 | 99 | | Plus |
BO08215.pep Sequence
Translation from 16 to 1378
> BO08215.pep
MAMYRASGLRIMQQMRRRIPVELQPLQVAKAAPALQTFTSQRWTSTTTTS
GKHASPQVTTPPPRHDWNRAVSEAERIVGYPTSFLSLRWLLSDEIANVAL
HLRKLVGSAHPLMKTAKHLLYNGKNTMQAWGLIVLLVSKAAGHAPSVPDV
EQDKSAGVLHSQRALAEVTEMIRISHLVHNSVVNLQSSTQAGQDVDTYDD
MSFGNKIGLLTGDYLLGHSSAELANLRNQEVVELISSAVRDFSESEFIGE
RDEQNNPLPYKPGTFQRPSLSVGVDFNEHDVMTPMPIAQVLGNPEEEWEC
RNILNAGSLLGKSCQASLKLAGQSEELQRHAYRFGKHLALAWQACLDAEP
FQCPQLPLDVTFSLVSAPVLFHLEHDPGMYSQLEAGKQSVDNIDYDKIHK
AILAGPALAKTKELQRKHTAAALAVLQHFPATDARQALENIILAMQDLAS
FLDH
BO08215.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:19:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10585-PB | 448 | CG10585-PB | 1..448 | 1..448 | 2306 | 100 | Plus |
CG10585-PA | 448 | CG10585-PA | 1..448 | 1..448 | 2306 | 100 | Plus |