Clone Sequence Records
BO08216.3prime Sequence
867 bp (866 high quality bases) assembled on 2006-01-06
> BO08216.3prime
ATGGTCTAGAAAGCTTGCAAGAGGATTGCAGCGCTGGTCCTGCGGGTAGA
GGACATCTCCAGGACGGCACCTAAAGGCCTCCAGGAACTCCGGCGAGTTG
CGCAGTGTGGCGTGAGTCACCTGCCGCTTACGGTCCTGCTGCAGGGCGCC
CAGCTCGGAGCGGCAGTCGACGAGCAGGCTGGTAACGAAAAAGAGCCTCT
GTAGGGACATCTTCGAGCTACCGGCGGCCAGAACCGCGTCGACTCTCTCC
ACTAGCCCCGCCTGGGTGGCAAGCCACTGACCGTAAGCACTAAGCGCTTG
CCTTTGGGCGAGCAGGCTCAGAAGCAGATCGATGGCGTTCGTCTGCTTAC
CTACGCACTGTTGGAAGATGGCAAAGCGCCTCTCGGAGTCCGAGCTCCGC
CAGGCTCCTTGCGTACGAGAGCTGCTACCTGCGGCTACAAGGCTTCGCGA
AAAGAACTCCCCCAGTAGGAGGTAGTTGAGCGGCGTGCTCAGATTGTGCT
GCCCTAGGAACGCATTTACTGGAGCGAACATTTGGGCGTAGCGACGCACC
TGCTGGGCGGAATGGGAGGCCAAACGTCGCGTGCGCTGAAACTTGCGCAG
CTTCTCCAGGTTGCGGTAGAGGCTCCGCCGACCCAACAAAATCGAGTGGT
ATGCCGCGTCCAATCGCTCATCTCCATTCAGCGTAGTGTGCATTATGTTA
CCCAAAAACTGTCTCGAGCTCTGCCTAGAGATCTCATCGATCCACACACT
GCCGCCTAGCTGGTCTGTGTAGGCCTTTCCCAGCTCCGAGTACATTTGGG
CCAGTTCGACTCGATTTGCCGTAACACGTTGCACTACGTGGGCGTAAAGG
TCCCCGGCGTAGGTTTC
BO08216.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9780-PA | 1779 | CG9780-RA | 928..1776 | 867..19 | 4245 | 100 | Minus |
| CG9780-PB | 1977 | CG9780-RB | 928..1763 | 867..32 | 4180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:39:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9780-RA | 2182 | CG9780-RA | 1121..1969 | 867..19 | 4245 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:39:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4292487..4293335 | 19..867 | 4245 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:39:19 has no hits.
BO08216.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:11 Download gff for
BO08216.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9780-PA | 928..1779 | 18..867 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:32:56 Download gff for
BO08216.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9780-PA | 928..1779 | 18..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:50:38 Download gff for
BO08216.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9780-RA | 1121..1969 | 19..867 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:03:05 Download gff for
BO08216.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9780-RA | 1121..1969 | 19..867 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:03:05 Download gff for
BO08216.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4292487..4293335 | 19..867 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:50:38 Download gff for
BO08216.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 118209..119057 | 19..867 | 100 | | Plus |
BO08216.5prime Sequence
883 bp (869 high quality bases) assembled on 2006-01-06
> BO08216.5prime
GAAGTTATCAGTCGACATGATTTCAAAAGCACTGGCCGTCCTGTGGATAG
CTGGCATCGCCTACGGCCAGGACGATCTGCTCAGGGTGGAAACCGAATTG
TTGAGCTTCTCTCACAACCTAGAGCCGTATCTCGACACCAGCAAGCAGCC
CTGCCAGGACTTCTACGGTTATGTCTGCTCGCACAGCGCCAACCTCAGCG
AGACTGGCAGGCAGCGATTCCAAAGCTTGCTTAAGGAAACGGACGTGGCG
CAGCTGATGGACATGGAACTCCAACTGATAAACTTCTTCAAGTCTTGCGA
GAGCGGGCGTGGCGTAGAGGCGCTCAAGGGATCTCAATTGTATAGGCAGA
GTGGGGGCTGGCCTAGCTTGGAACCGAACAAAGTCAATGCCAGTCAGCGG
ACTAACCAAACCCAAAGATGGCTGGGACTTCTTGGGTACTTCCACGAAGT
GGGCGCGCCCTATTTCTTCGAGACGTCGGTCACCATGCAGTCCAACAAGC
GACTTGTGGTACTGCAACCCGACGGCACGCGCCGAAACACTCTAAGAAAA
TTCGAGCAGCGGGTGGGCGAAGTCCTGCAAAGCTTCGGGATAGAACAGAG
CCGCGCCCACGTGACCGCCCTCGAAGTGCTCAGCTTGGAGCGCAGTAGAC
GGGACATTGTAAAGGCGGATCACGTCGAGGATCAAGTGCAGTTTTCCTAT
GGAAACTTTAAGCGCATCGTCTTCGGAAACGCCTCGCTGATCAGACTGGA
CTGGGATGGCTACTTCCGCAAGTTGCTAGGCGGCAAAACGCCACAGGCCA
GCGACACCATTGTAGTCAAACAACTGCCCAGACTGGTTGAGTACTTCGCG
CTGCTCCAAAACACAAGCATGGGTCGACTTCTA
BO08216.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9780-PA | 1779 | CG9780-RA | 1..866 | 17..882 | 4305 | 99.8 | Plus |
| CG9780-PB | 1977 | CG9780-RB | 1..866 | 17..882 | 4305 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:40:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9780-RA | 2182 | CG9780-RA | 194..1059 | 17..882 | 4315 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:40:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4293782..4294647 | 882..17 | 4315 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:40:25 has no hits.
BO08216.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:12 Download gff for
BO08216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9780-PA | 1..866 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:32:57 Download gff for
BO08216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9780-PB | 1..866 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:50:40 Download gff for
BO08216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9780-RA | 186..1059 | 9..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:06:11 Download gff for
BO08216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9780-RA | 186..1059 | 9..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:06:11 Download gff for
BO08216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4293782..4294655 | 9..882 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:50:40 Download gff for
BO08216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 119504..120377 | 9..882 | 99 | | Minus |
BO08216.complete Sequence
1810 bp (1810 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631101
> BO08216.complete
GAAGTTATCAGTCGACATGATTTCAAAAGCACTGGCCGTCCTGTGGATAG
CTGGCATCGCCTACGGCCAGGACGATCTGCTCAGGGTGGAAACCGAATTG
TTGAGCTTCTCTCACAACCTAGAGCCGTATCTCGACACCAGCAAGCAGCC
CTGCCAGGACTTCTACGGTTATGTCTGCTCGCACAGCGCCAACCTCAGCG
AGACTGGCAGGCAGCGATTCCAAAGCTTGCTTAAGGAAACGGACGTGGCG
CAGCTGATGGACATGGAACTCCAACTGATAAACTTCTTCAAGTCTTGCGA
GAGCGGGCGTGGCGTAGAGGCGCTCAAGGGATCTCAATTGTATAGGCAGA
GTGGGGGCTGGCCTAGCTTGGAACCGAACAAAGTCAATGCCAGTCAGCGG
ACTAACCAAACCCAAAGATGGCTGGGACTTCTTGGGTACTTCCACGAAGT
GGGCGCGCCCTATTTCTTCGAGACGTCGGTCACCATGCAGTCCAACAAGC
GACTTGTGGTACTGCAACCCGACGGCACGCGCCGAAACACTCTAAGAAAA
TTCGAGCAGCGGGTGGGCGAAGTCCTGCAAAGCTTCGGGATAGAACAGAG
CCGCGCCCACGTGACCGCCCTCGAAGTGCTCAGCTTGGAGCGCAGTAGAC
GGGACATTGTAAAGGCGGATCACGTCGAGGATCAAGTGCAGTTTTCCTAT
GGAAACTTTAAGCGCATCGTCTTCGGAAACGCCTCGCTGATCAGACTGGA
CTGGGATGGCTACTTCCGCAAGTTGCTAGGCGGCAAAACGCCACAGGCCA
GCGACACCATTGTAGTCAAACAACTGCCCAGACTGGTTGAGTACTTCGCG
CTGCTCCAAAACACAAGCATGGTTCGACTTCTTAATTGGATATGGACGGA
CTACTTGATGGACATCGTAGATGCAGACTGCCACCAATTATCGGAAACCT
ACGCCGGGGACCTTTACGCCCACGTAGTGCAACGTGTTACGGCAAATCGA
GTCGAACTGGCCCAAATGTACTCGGAGCTGGGAAAGGCCTACACAGACCA
GCTAGGCGGCAGTGTGTGGATCGATGAGATCTCTAGGCAGAGCTCGAGAC
AGTTTTTGGGTAACATAATGCACACTACGCTGAATGGAGATGAGCGATTG
GACGCGGCATACCACTCGATTTTGTTGGGTCGGCGGAGCCTCTACCGCAA
CCTGGAGAAGCTGCGCAAGTTTCAGCGCACGCGACGTTTGGCCTCCCATT
CCGCCCAGCAGGTGCGTCGCTACGCCCAAATGTTCGCTCCAGTAAATGCG
TTCCTAGGGCAGCACAATCTGAGCACGCCGCTCAACTACCTCCTACTGGG
GGAGTTCTTTTCGCGAAGCCTTGTAGCCGCAGGTAGCAGCTCTCGTACGC
AAGGAGCCTGGCGGAGCTCGGACTCCGAGAGGCGCTTTGCCATCTTCCAA
CAGTGCGTAGGTAAGCAGACGAACGCCATCGATCTGCTTCTGAGCCTGCT
CGCCCAAAGGCAAGCGCTTAGTGCTTACGGTCAGTGGCTTGCCACCCAGG
CGGGGCTAGTGGAGAGAGTCGACGCGGTTCTGGCCGCCGGTAGCTCGAAG
ATGTCCCTACAGAGGCTCTTTTTCGTTACCAGCCTGCTCGTCGACTGCCG
CTCCGAGCTGGGCGCCCTGCAGCAGGACCGTAAGCGGCAGGTGACTCACG
CCACACTGCGCAACTCGCCGGAGTTCCTGGAGGCCTTTAGGTGCCGTCCT
GGAGATGTCCTCTACCCGCAGGACCAGCGCTGCAATCCTCTTGCAAGCTT
TCTAGACCAT
BO08216.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:02:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9780-RA | 1779 | CG9780-PA | 1..1776 | 17..1792 | 8880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9780-RA | 2182 | CG9780-RA | 194..1969 | 17..1792 | 8880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4293753..4294647 | 911..17 | 4475 | 100 | Minus |
| 3R | 32079331 | 3R | 4292487..4293368 | 1792..911 | 4410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:02:55 has no hits.
BO08216.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:17 Download gff for
BO08216.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9780-RA | 1..1779 | 17..1793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:19:48 Download gff for
BO08216.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9780-RA | 182..1965 | 9..1792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:43 Download gff for
BO08216.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9780-RA | 194..1969 | 17..1794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:17 Download gff for
BO08216.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9780-RA | 182..1965 | 9..1792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:44 Download gff for
BO08216.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9780-RA | 194..1969 | 17..1794 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:44 Download gff for
BO08216.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4292485..4293367 | 912..1794 | 99 | <- | Minus |
| 3R | 4293753..4294647 | 17..911 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:43 Download gff for
BO08216.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 118207..119089 | 912..1794 | 99 | <- | Minus |
| arm_3R | 119475..120369 | 17..911 | 100 | | Minus |
BO08216.pep Sequence
Translation from 16 to 1810
> BO08216.pep
MISKALAVLWIAGIAYGQDDLLRVETELLSFSHNLEPYLDTSKQPCQDFY
GYVCSHSANLSETGRQRFQSLLKETDVAQLMDMELQLINFFKSCESGRGV
EALKGSQLYRQSGGWPSLEPNKVNASQRTNQTQRWLGLLGYFHEVGAPYF
FETSVTMQSNKRLVVLQPDGTRRNTLRKFEQRVGEVLQSFGIEQSRAHVT
ALEVLSLERSRRDIVKADHVEDQVQFSYGNFKRIVFGNASLIRLDWDGYF
RKLLGGKTPQASDTIVVKQLPRLVEYFALLQNTSMVRLLNWIWTDYLMDI
VDADCHQLSETYAGDLYAHVVQRVTANRVELAQMYSELGKAYTDQLGGSV
WIDEISRQSSRQFLGNIMHTTLNGDERLDAAYHSILLGRRSLYRNLEKLR
KFQRTRRLASHSAQQVRRYAQMFAPVNAFLGQHNLSTPLNYLLLGEFFSR
SLVAAGSSSRTQGAWRSSDSERRFAIFQQCVGKQTNAIDLLLSLLAQRQA
LSAYGQWLATQAGLVERVDAVLAAGSSKMSLQRLFFVTSLLVDCRSELGA
LQQDRKRQVTHATLRNSPEFLEAFRCRPGDVLYPQDQRCNPLASFLDH
BO08216.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:45:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9780-PA | 592 | CG9780-PA | 1..592 | 1..592 | 3038 | 100 | Plus |
