Clone Sequence Records
BO08217.3prime Sequence
951 bp (817 high quality bases) assembled on 2006-01-06
> BO08217.3prime
ATGGTCTAGAAAGCTTGCAATGCACATTTTGCTAACCTGCTGCAGCAACA
GATTACGGCGTTCGCCCTTTGGTTCATTGTTTACAAACGGCACCAGAATG
CCCAAAGCTGAAGTATACGACTCCAGTGCTGCGTCCAGCTTCCGCTCGTA
GAGGTATAGCTCACCCTTCCGTCCGATTTCCAGGCCAGTCTTCATGGACG
GACTTGAGTTCGAAAGGGCATATAGCTGTTTATAGCGGGAATCCGGTTCC
AGCATTTCTGCAACACGCGAGCTGCTTGGCTGCGCAGCGGGCACCTGGGT
AGCTGAAGATGGCTCTTGGTTAGCTGTGGCAGCTGTAGCCGCCTGCCGTT
GACGTTCAGCCAACATTCTGTATTCGTCCTCGATTATGCAATTCTTGATT
TCCTCGGCGCGCTTTGTGTAGGACAAGGCACGATTGCGCAATGCCAGCCG
CTTGGTGGCGTCCGTCTCCTCCGTGATAAGCGGCACAAAATACTGCAGGG
CACTGCAGTACAGATAGTAAGCCTCCTTGTAATTGTGTTTCTCATCGTAT
GCGCATGCTTGCGTGACCAAATCAATGGCCTTTTGCAGAGTGTGCTCCGT
GGGAAACGTCTTGAGATCGAGAAAGGGATGCGCAAAGAAGTCTGCAAACG
AAATGCGCGCCGTGGGCTCGTGGGCCAAAAGGCGGCGCAAGAGATCATGG
CACTCGTTGCTGATCCGAGCGTTTGGTGGCAGTGTTATGGCCTCGGCCTT
CCTAATCCTCAGCAATAGCTCCTCAATGGTTCGCGAACTATACGGCGCCT
TGCCGAATAGGCATTCGTAGAGGATGACCCCGATGCTCCAGAGATCCGCC
TTGGCATCGTACTGATGCTTGCGCACAATCTCTGGGGCCATGTAGAGCGG
CGATCCCTTCAGCTGTTGATTGATTTCGCCTAGTTTGAGGTGCTGAGCAA
A
BO08217.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8866-PB | 1398 | CG8866-RB | 463..1395 | 951..19 | 4665 | 100 | Minus |
CG8866-PA | 1563 | CG8866-RA | 463..1377 | 951..37 | 4575 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:55:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8866-RB | 2113 | CG8866-RB | 580..1512 | 951..19 | 4665 | 100 | Minus |
CG8866-RA | 1684 | CG8866-RA | 580..1494 | 951..37 | 4575 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 14:55:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9332930..9333659 | 222..951 | 3650 | 100 | Plus |
3R | 32079331 | 3R | 9332665..9332867 | 19..221 | 1015 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 14:55:11 has no hits.
BO08217.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:13 Download gff for
BO08217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8866-PB | 466..1398 | 15..948 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:32:58 Download gff for
BO08217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8866-PB | 466..1398 | 15..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:14:18 Download gff for
BO08217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8866-RB | 583..1519 | 12..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:33:03 Download gff for
BO08217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8866-RB | 583..1519 | 12..948 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:33:03 Download gff for
BO08217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9332658..9332867 | 12..221 | 98 | <- | Plus |
3R | 9332930..9333656 | 222..948 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:14:18 Download gff for
BO08217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5158380..5158589 | 12..221 | 98 | <- | Plus |
arm_3R | 5158652..5159378 | 222..948 | 100 | | Plus |
BO08217.5prime Sequence
933 bp (865 high quality bases) assembled on 2006-01-06
> BO08217.5prime
GAAGTTATCAGTCGACATGTCACTGCCGCGGATCACGGACTTTGAAATTC
TCGAGAAACTTGGAGCGGGCAGCTATGCGACCGTGTACAAAGCGCGGCAC
AAAAAACAGCGCACTTATCATGCCATCAAGTATGTGGAAATGTCGACGTT
GTCGCAAACCTCGCGGGAAAACCTAATCACCGAAATACGCCTCCTCCGGG
AACTCAAGCACAAGTACATTGTGACCCTGCAGGATTTCTTCTGGGACGAC
AAAAATATTTACATCGTTTTGGAGTATTGCAATGCCGGCAATCTATCCGC
TTTTATACGAACCAAGAAGGCATTGCCGGAGAGCACCTGTCGCTACTTTT
TGCGCCAATTAGCTGCCGCTGTGCAGTACATGCGAGCCAACGATGTGTCC
CACTTCGACCTTAAGCCACAGAACCTGCTGCTTACCCGGGGAGCTAACAA
TGTGTCCCTGAAGGTGGCAGACTTTGGGTTTGCTCAGCACCTCAAACTAG
GCGAAATCAATCAACAGCTGAAGGGATCGCCGCTCTACATGGCCCCAGAG
ATTGTGCGCAAGCATCAGTACGATGCCAAGGCGGATCTCTGGAGCATCGG
GGTCATCCTCTACGAATGCCTATTCGGCAAGGCGCCGTATAGTTCGCGAA
CCATTGAGGAGCTATTGCTGAGGATTAGGAAGGCCGAGGCCATAACACTG
CCACCAAACGCTCGGATCAGCAACGAGTGCCATGATCTCTTGCGCCGCCT
TTTGGCCCACGAGCCCACGGCGCGCATTTCGTTTGCAGACTTCTTTGCGC
ATCCCTTTCTCGATCTCAAGACGTTTCCCACGGAGCACACTCTGCAAAAG
GCCATTGATTTGGTCACGNCAGCATGCGCATACGATGAGAAACACAATTA
CNAGGAGGCTTACTATCTGTACTGCAGTGGCCT
BO08217.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8866-PA | 1563 | CG8866-RA | 1..913 | 17..929 | 4502 | 99.6 | Plus |
CG8866-PB | 1398 | CG8866-RB | 1..913 | 17..929 | 4502 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:50:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8866-RB | 2113 | CG8866-RB | 116..1034 | 15..933 | 4543 | 99.6 | Plus |
CG8866-RA | 1684 | CG8866-RA | 116..1034 | 15..933 | 4543 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:50:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9333205..9333661 | 933..477 | 2233 | 99.1 | Minus |
3R | 32079331 | 3R | 9333719..9333945 | 479..253 | 1135 | 100 | Minus |
3R | 32079331 | 3R | 9334294..9334442 | 252..104 | 745 | 100 | Minus |
3R | 32079331 | 3R | 9334511..9334599 | 103..15 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 15:50:32 has no hits.
BO08217.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:14 Download gff for
BO08217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8866-PA | 1..917 | 17..933 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:32:59 Download gff for
BO08217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8866-PB | 1..917 | 17..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:10:00 Download gff for
BO08217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8866-RA | 116..1034 | 15..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:24:42 Download gff for
BO08217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8866-RA | 116..1034 | 15..933 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:24:42 Download gff for
BO08217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9333205..9333660 | 478..933 | 99 | <- | Minus |
3R | 9333721..9333945 | 253..477 | 100 | <- | Minus |
3R | 9334294..9334442 | 104..252 | 100 | <- | Minus |
3R | 9334511..9334599 | 15..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:10:00 Download gff for
BO08217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5158927..5159382 | 478..933 | 99 | <- | Minus |
arm_3R | 5159443..5159667 | 253..477 | 100 | <- | Minus |
arm_3R | 5160016..5160164 | 104..252 | 100 | <- | Minus |
arm_3R | 5160233..5160321 | 15..103 | 100 | | Minus |
BO08217.complete Sequence
1429 bp (1429 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631102
> BO08217.complete
GAAGTTATCAGTCGACATGTCACTGCCGCGGATCACGGACTTTGAAATTC
TCGAGAAACTTGGAGCGGGCAGCTATGCGACCGTGTACAAAGCGCGGCAC
AAAAAACAGCGCACTTATCATGCCATCAAGTATGTGGAAATGTCGACGTT
GTCGCAAACCTCGCGGGAAAACCTAATCACCGAAATACGCCTCCTCCGGG
AACTCAAGCACAAGTACATTGTGACCCTGCAGGATTTCTTCTGGGACGAC
AAAAATATTTACATCGTTTTGGAGTATTGCAATGCCGGCAATCTATCCGC
TTTTATACGAACCAAGAAGGCATTGCCGGAGAGCACCTGTCGCTACTTTT
TGCGCCAATTAGCTGCCGCTGTGCAGTACATGCGAGCCAACGATGTGTCC
CACTTCGACCTTAAGCCACAGAACCTGCTGCTTACCCGGGGAGCTAACAA
TGTGTCCCTGAAGGTGGCAGACTTTGGGTTTGCTCAGCACCTCAAACTAG
GCGAAATCAATCAACAGCTGAAGGGATCGCCGCTCTACATGGCCCCAGAG
ATTGTGCGCAAGCATCAGTACGATGCCAAGGCGGATCTCTGGAGCATCGG
GGTCATCCTCTACGAATGCCTATTCGGCAAGGCGCCGTATAGTTCGCGAA
CCATTGAGGAGCTATTGCTGAGGATTAGGAAGGCCGAGGCCATAACACTG
CCACCAAACGCTCGGATCAGCAACGAGTGCCATGATCTCTTGCGCCGCCT
TTTGGCCCACGAGCCCACGGCGCGCATTTCGTTTGCAGACTTCTTTGCGC
ATCCCTTTCTCGATCTCAAGACGTTTCCCACGGAGCACACTCTGCAAAAG
GCCATTGATTTGGTCACGCAAGCATGCGCATACGATGAGAAACACAATTA
CAAGGAGGCTTACTATCTGTACTGCAGTGCCCTGCAGTATTTTGTGCCGC
TTATCACGGAGGAGACGGACGCCACCAAGCGGCTGGCATTGCGCAATCGT
GCCTTGTCCTACACAAAGCGCGCCGAGGAAATCAAGAATTGCATAATCGA
GGACGAATACAGAATGTTGGCTGAACGTCAACGGCAGGCGGCTACAGCTG
CCACAGCTAACCAAGAGCCATCTTCAGCTACCCAGGTGCCCGCTGCGCAG
CCAAGCAGCTCGCGTGTTGCAGAAATGCTGGAACCGGATTCCCGCTATAA
ACAGCTATATGCCCTTTCGAACTCAAGTCCGTCCATGAAGACTGGCCTGG
AAATCGGACGGAAGGGTGAGCTATACCTCTACGAGCGGAAGCTGGACGCA
GCACTGGAGTCGTATACTTCAGCTTTGGGCATTCTGGTGCCGTTTGTAAA
CAATGAACCAAAGGGCGAACGCCGTAATCTGTTGCTGCAGCAGGTTAGCA
AAATGTGCATTGCAAGCTTTCTAGACCAT
BO08217.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:48:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8866-RB | 1398 | CG8866-PB | 1..1395 | 17..1411 | 6975 | 100 | Plus |
CG8866-RA | 1563 | CG8866-PA | 1..1377 | 17..1393 | 6885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:48:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8866-RB | 2113 | CG8866-RB | 116..1512 | 15..1411 | 6985 | 100 | Plus |
CG8866-RA | 1684 | CG8866-RA | 116..1494 | 15..1393 | 6895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:48:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9332930..9333661 | 1208..477 | 3660 | 100 | Minus |
3R | 32079331 | 3R | 9333719..9333945 | 479..253 | 1135 | 100 | Minus |
3R | 32079331 | 3R | 9332665..9332867 | 1411..1209 | 1015 | 100 | Minus |
3R | 32079331 | 3R | 9334294..9334442 | 252..104 | 745 | 100 | Minus |
3R | 32079331 | 3R | 9334511..9334599 | 103..15 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:48:10 has no hits.
BO08217.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:11 Download gff for
BO08217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8866-RB | 1..1398 | 17..1415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:31:55 Download gff for
BO08217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8866-RB | 116..1519 | 15..1418 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:46:06 Download gff for
BO08217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8866-RB | 118..1512 | 17..1413 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:11 Download gff for
BO08217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8866-RB | 116..1519 | 15..1418 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:59 Download gff for
BO08217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8866-RB | 118..1512 | 17..1413 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:59 Download gff for
BO08217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9332663..9332867 | 1209..1413 | 99 | <- | Minus |
3R | 9332930..9333660 | 478..1208 | 100 | <- | Minus |
3R | 9333721..9333945 | 253..477 | 100 | <- | Minus |
3R | 9334294..9334442 | 104..252 | 100 | <- | Minus |
3R | 9334511..9334597 | 17..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:46:06 Download gff for
BO08217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5158385..5158589 | 1209..1413 | 99 | <- | Minus |
arm_3R | 5158652..5159382 | 478..1208 | 100 | <- | Minus |
arm_3R | 5159443..5159667 | 253..477 | 100 | <- | Minus |
arm_3R | 5160016..5160164 | 104..252 | 100 | <- | Minus |
arm_3R | 5160233..5160319 | 17..103 | 100 | | Minus |
BO08217.pep Sequence
Translation from 16 to 1429
> BO08217.pep
MSLPRITDFEILEKLGAGSYATVYKARHKKQRTYHAIKYVEMSTLSQTSR
ENLITEIRLLRELKHKYIVTLQDFFWDDKNIYIVLEYCNAGNLSAFIRTK
KALPESTCRYFLRQLAAAVQYMRANDVSHFDLKPQNLLLTRGANNVSLKV
ADFGFAQHLKLGEINQQLKGSPLYMAPEIVRKHQYDAKADLWSIGVILYE
CLFGKAPYSSRTIEELLLRIRKAEAITLPPNARISNECHDLLRRLLAHEP
TARISFADFFAHPFLDLKTFPTEHTLQKAIDLVTQACAYDEKHNYKEAYY
LYCSALQYFVPLITEETDATKRLALRNRALSYTKRAEEIKNCIIEDEYRM
LAERQRQAATAATANQEPSSATQVPAAQPSSSRVAEMLEPDSRYKQLYAL
SNSSPSMKTGLEIGRKGELYLYERKLDAALESYTSALGILVPFVNNEPKG
ERRNLLLQQVSKMCIASFLDH
BO08217.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:19:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8866-PB | 465 | CG8866-PB | 1..465 | 1..465 | 2380 | 100 | Plus |
CG8866-PA | 520 | CG8866-PA | 1..460 | 1..460 | 2350 | 99.8 | Plus |
Atg1-PA | 835 | CG10967-PA | 8..277 | 8..268 | 470 | 39.3 | Plus |
Atg1-PB | 855 | CG10967-PB | 8..277 | 8..268 | 470 | 39.3 | Plus |
Sik2-PA | 1398 | CG4290-PA | 137..392 | 5..265 | 401 | 34.4 | Plus |