Clone BO08217 Report

Search the DGRC for BO08217

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:82
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG8866-RB
Protein status:BO08217.pep: validated full length
Sequenced Size:1429

Clone Sequence Records

BO08217.3prime Sequence

951 bp (817 high quality bases) assembled on 2006-01-06

> BO08217.3prime
ATGGTCTAGAAAGCTTGCAATGCACATTTTGCTAACCTGCTGCAGCAACA
GATTACGGCGTTCGCCCTTTGGTTCATTGTTTACAAACGGCACCAGAATG
CCCAAAGCTGAAGTATACGACTCCAGTGCTGCGTCCAGCTTCCGCTCGTA
GAGGTATAGCTCACCCTTCCGTCCGATTTCCAGGCCAGTCTTCATGGACG
GACTTGAGTTCGAAAGGGCATATAGCTGTTTATAGCGGGAATCCGGTTCC
AGCATTTCTGCAACACGCGAGCTGCTTGGCTGCGCAGCGGGCACCTGGGT
AGCTGAAGATGGCTCTTGGTTAGCTGTGGCAGCTGTAGCCGCCTGCCGTT
GACGTTCAGCCAACATTCTGTATTCGTCCTCGATTATGCAATTCTTGATT
TCCTCGGCGCGCTTTGTGTAGGACAAGGCACGATTGCGCAATGCCAGCCG
CTTGGTGGCGTCCGTCTCCTCCGTGATAAGCGGCACAAAATACTGCAGGG
CACTGCAGTACAGATAGTAAGCCTCCTTGTAATTGTGTTTCTCATCGTAT
GCGCATGCTTGCGTGACCAAATCAATGGCCTTTTGCAGAGTGTGCTCCGT
GGGAAACGTCTTGAGATCGAGAAAGGGATGCGCAAAGAAGTCTGCAAACG
AAATGCGCGCCGTGGGCTCGTGGGCCAAAAGGCGGCGCAAGAGATCATGG
CACTCGTTGCTGATCCGAGCGTTTGGTGGCAGTGTTATGGCCTCGGCCTT
CCTAATCCTCAGCAATAGCTCCTCAATGGTTCGCGAACTATACGGCGCCT
TGCCGAATAGGCATTCGTAGAGGATGACCCCGATGCTCCAGAGATCCGCC
TTGGCATCGTACTGATGCTTGCGCACAATCTCTGGGGCCATGTAGAGCGG
CGATCCCTTCAGCTGTTGATTGATTTCGCCTAGTTTGAGGTGCTGAGCAA
A

BO08217.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG8866-PB 1398 CG8866-RB 463..1395 951..19 4665 100 Minus
CG8866-PA 1563 CG8866-RA 463..1377 951..37 4575 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:55:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG8866-RB 2113 CG8866-RB 580..1512 951..19 4665 100 Minus
CG8866-RA 1684 CG8866-RA 580..1494 951..37 4575 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 14:55:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9332930..9333659 222..951 3650 100 Plus
3R 32079331 3R 9332665..9332867 19..221 1015 100 Plus
Blast to na_te.dros performed on 2015-02-13 14:55:11 has no hits.

BO08217.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:13 Download gff for BO08217.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8866-PB 466..1398 15..948 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:32:58 Download gff for BO08217.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8866-PB 466..1398 15..948 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:14:18 Download gff for BO08217.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8866-RB 583..1519 12..948 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:33:03 Download gff for BO08217.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8866-RB 583..1519 12..948 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:33:03 Download gff for BO08217.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9332658..9332867 12..221 98 <- Plus
3R 9332930..9333656 222..948 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:14:18 Download gff for BO08217.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5158380..5158589 12..221 98 <- Plus
arm_3R 5158652..5159378 222..948 100   Plus

BO08217.5prime Sequence

933 bp (865 high quality bases) assembled on 2006-01-06

> BO08217.5prime
GAAGTTATCAGTCGACATGTCACTGCCGCGGATCACGGACTTTGAAATTC
TCGAGAAACTTGGAGCGGGCAGCTATGCGACCGTGTACAAAGCGCGGCAC
AAAAAACAGCGCACTTATCATGCCATCAAGTATGTGGAAATGTCGACGTT
GTCGCAAACCTCGCGGGAAAACCTAATCACCGAAATACGCCTCCTCCGGG
AACTCAAGCACAAGTACATTGTGACCCTGCAGGATTTCTTCTGGGACGAC
AAAAATATTTACATCGTTTTGGAGTATTGCAATGCCGGCAATCTATCCGC
TTTTATACGAACCAAGAAGGCATTGCCGGAGAGCACCTGTCGCTACTTTT
TGCGCCAATTAGCTGCCGCTGTGCAGTACATGCGAGCCAACGATGTGTCC
CACTTCGACCTTAAGCCACAGAACCTGCTGCTTACCCGGGGAGCTAACAA
TGTGTCCCTGAAGGTGGCAGACTTTGGGTTTGCTCAGCACCTCAAACTAG
GCGAAATCAATCAACAGCTGAAGGGATCGCCGCTCTACATGGCCCCAGAG
ATTGTGCGCAAGCATCAGTACGATGCCAAGGCGGATCTCTGGAGCATCGG
GGTCATCCTCTACGAATGCCTATTCGGCAAGGCGCCGTATAGTTCGCGAA
CCATTGAGGAGCTATTGCTGAGGATTAGGAAGGCCGAGGCCATAACACTG
CCACCAAACGCTCGGATCAGCAACGAGTGCCATGATCTCTTGCGCCGCCT
TTTGGCCCACGAGCCCACGGCGCGCATTTCGTTTGCAGACTTCTTTGCGC
ATCCCTTTCTCGATCTCAAGACGTTTCCCACGGAGCACACTCTGCAAAAG
GCCATTGATTTGGTCACGNCAGCATGCGCATACGATGAGAAACACAATTA
CNAGGAGGCTTACTATCTGTACTGCAGTGGCCT

BO08217.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG8866-PA 1563 CG8866-RA 1..913 17..929 4502 99.6 Plus
CG8866-PB 1398 CG8866-RB 1..913 17..929 4502 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:50:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG8866-RB 2113 CG8866-RB 116..1034 15..933 4543 99.6 Plus
CG8866-RA 1684 CG8866-RA 116..1034 15..933 4543 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9333205..9333661 933..477 2233 99.1 Minus
3R 32079331 3R 9333719..9333945 479..253 1135 100 Minus
3R 32079331 3R 9334294..9334442 252..104 745 100 Minus
3R 32079331 3R 9334511..9334599 103..15 445 100 Minus
Blast to na_te.dros performed on 2015-02-12 15:50:32 has no hits.

BO08217.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:14 Download gff for BO08217.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8866-PA 1..917 17..933 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:32:59 Download gff for BO08217.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8866-PB 1..917 17..933 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:10:00 Download gff for BO08217.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8866-RA 116..1034 15..933 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:24:42 Download gff for BO08217.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8866-RA 116..1034 15..933 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:24:42 Download gff for BO08217.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9333205..9333660 478..933 99 <- Minus
3R 9333721..9333945 253..477 100 <- Minus
3R 9334294..9334442 104..252 100 <- Minus
3R 9334511..9334599 15..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:10:00 Download gff for BO08217.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5158927..5159382 478..933 99 <- Minus
arm_3R 5159443..5159667 253..477 100 <- Minus
arm_3R 5160016..5160164 104..252 100 <- Minus
arm_3R 5160233..5160321 15..103 100   Minus

BO08217.complete Sequence

1429 bp (1429 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ631102

> BO08217.complete
GAAGTTATCAGTCGACATGTCACTGCCGCGGATCACGGACTTTGAAATTC
TCGAGAAACTTGGAGCGGGCAGCTATGCGACCGTGTACAAAGCGCGGCAC
AAAAAACAGCGCACTTATCATGCCATCAAGTATGTGGAAATGTCGACGTT
GTCGCAAACCTCGCGGGAAAACCTAATCACCGAAATACGCCTCCTCCGGG
AACTCAAGCACAAGTACATTGTGACCCTGCAGGATTTCTTCTGGGACGAC
AAAAATATTTACATCGTTTTGGAGTATTGCAATGCCGGCAATCTATCCGC
TTTTATACGAACCAAGAAGGCATTGCCGGAGAGCACCTGTCGCTACTTTT
TGCGCCAATTAGCTGCCGCTGTGCAGTACATGCGAGCCAACGATGTGTCC
CACTTCGACCTTAAGCCACAGAACCTGCTGCTTACCCGGGGAGCTAACAA
TGTGTCCCTGAAGGTGGCAGACTTTGGGTTTGCTCAGCACCTCAAACTAG
GCGAAATCAATCAACAGCTGAAGGGATCGCCGCTCTACATGGCCCCAGAG
ATTGTGCGCAAGCATCAGTACGATGCCAAGGCGGATCTCTGGAGCATCGG
GGTCATCCTCTACGAATGCCTATTCGGCAAGGCGCCGTATAGTTCGCGAA
CCATTGAGGAGCTATTGCTGAGGATTAGGAAGGCCGAGGCCATAACACTG
CCACCAAACGCTCGGATCAGCAACGAGTGCCATGATCTCTTGCGCCGCCT
TTTGGCCCACGAGCCCACGGCGCGCATTTCGTTTGCAGACTTCTTTGCGC
ATCCCTTTCTCGATCTCAAGACGTTTCCCACGGAGCACACTCTGCAAAAG
GCCATTGATTTGGTCACGCAAGCATGCGCATACGATGAGAAACACAATTA
CAAGGAGGCTTACTATCTGTACTGCAGTGCCCTGCAGTATTTTGTGCCGC
TTATCACGGAGGAGACGGACGCCACCAAGCGGCTGGCATTGCGCAATCGT
GCCTTGTCCTACACAAAGCGCGCCGAGGAAATCAAGAATTGCATAATCGA
GGACGAATACAGAATGTTGGCTGAACGTCAACGGCAGGCGGCTACAGCTG
CCACAGCTAACCAAGAGCCATCTTCAGCTACCCAGGTGCCCGCTGCGCAG
CCAAGCAGCTCGCGTGTTGCAGAAATGCTGGAACCGGATTCCCGCTATAA
ACAGCTATATGCCCTTTCGAACTCAAGTCCGTCCATGAAGACTGGCCTGG
AAATCGGACGGAAGGGTGAGCTATACCTCTACGAGCGGAAGCTGGACGCA
GCACTGGAGTCGTATACTTCAGCTTTGGGCATTCTGGTGCCGTTTGTAAA
CAATGAACCAAAGGGCGAACGCCGTAATCTGTTGCTGCAGCAGGTTAGCA
AAATGTGCATTGCAAGCTTTCTAGACCAT

BO08217.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:48:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG8866-RB 1398 CG8866-PB 1..1395 17..1411 6975 100 Plus
CG8866-RA 1563 CG8866-PA 1..1377 17..1393 6885 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:48:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG8866-RB 2113 CG8866-RB 116..1512 15..1411 6985 100 Plus
CG8866-RA 1684 CG8866-RA 116..1494 15..1393 6895 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:48:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9332930..9333661 1208..477 3660 100 Minus
3R 32079331 3R 9333719..9333945 479..253 1135 100 Minus
3R 32079331 3R 9332665..9332867 1411..1209 1015 100 Minus
3R 32079331 3R 9334294..9334442 252..104 745 100 Minus
3R 32079331 3R 9334511..9334599 103..15 445 100 Minus
Blast to na_te.dros performed on 2014-11-27 12:48:10 has no hits.

BO08217.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:11 Download gff for BO08217.complete
Subject Subject Range Query Range Percent Splice Strand
CG8866-RB 1..1398 17..1415 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:31:55 Download gff for BO08217.complete
Subject Subject Range Query Range Percent Splice Strand
CG8866-RB 116..1519 15..1418 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:46:06 Download gff for BO08217.complete
Subject Subject Range Query Range Percent Splice Strand
CG8866-RB 118..1512 17..1413 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:11 Download gff for BO08217.complete
Subject Subject Range Query Range Percent Splice Strand
CG8866-RB 116..1519 15..1418 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:59 Download gff for BO08217.complete
Subject Subject Range Query Range Percent Splice Strand
CG8866-RB 118..1512 17..1413 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:59 Download gff for BO08217.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9332663..9332867 1209..1413 99 <- Minus
3R 9332930..9333660 478..1208 100 <- Minus
3R 9333721..9333945 253..477 100 <- Minus
3R 9334294..9334442 104..252 100 <- Minus
3R 9334511..9334597 17..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:46:06 Download gff for BO08217.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5158385..5158589 1209..1413 99 <- Minus
arm_3R 5158652..5159382 478..1208 100 <- Minus
arm_3R 5159443..5159667 253..477 100 <- Minus
arm_3R 5160016..5160164 104..252 100 <- Minus
arm_3R 5160233..5160319 17..103 100   Minus

BO08217.pep Sequence

Translation from 16 to 1429

> BO08217.pep
MSLPRITDFEILEKLGAGSYATVYKARHKKQRTYHAIKYVEMSTLSQTSR
ENLITEIRLLRELKHKYIVTLQDFFWDDKNIYIVLEYCNAGNLSAFIRTK
KALPESTCRYFLRQLAAAVQYMRANDVSHFDLKPQNLLLTRGANNVSLKV
ADFGFAQHLKLGEINQQLKGSPLYMAPEIVRKHQYDAKADLWSIGVILYE
CLFGKAPYSSRTIEELLLRIRKAEAITLPPNARISNECHDLLRRLLAHEP
TARISFADFFAHPFLDLKTFPTEHTLQKAIDLVTQACAYDEKHNYKEAYY
LYCSALQYFVPLITEETDATKRLALRNRALSYTKRAEEIKNCIIEDEYRM
LAERQRQAATAATANQEPSSATQVPAAQPSSSRVAEMLEPDSRYKQLYAL
SNSSPSMKTGLEIGRKGELYLYERKLDAALESYTSALGILVPFVNNEPKG
ERRNLLLQQVSKMCIASFLDH

BO08217.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:19:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG8866-PB 465 CG8866-PB 1..465 1..465 2380 100 Plus
CG8866-PA 520 CG8866-PA 1..460 1..460 2350 99.8 Plus
Atg1-PA 835 CG10967-PA 8..277 8..268 470 39.3 Plus
Atg1-PB 855 CG10967-PB 8..277 8..268 470 39.3 Plus
Sik2-PA 1398 CG4290-PA 137..392 5..265 401 34.4 Plus