Clone BO08222 Report

Search the DGRC for BO08222

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:82
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptFmo-1-RA
Protein status:BO08222.pep: validated full length
Sequenced Size:1282

Clone Sequence Records

BO08222.3prime Sequence

911 bp (829 high quality bases) assembled on 2006-01-06

> BO08222.3prime
ATGGTCTAGAAAGCTTGCGTTGAGTTTAATGAATGTCTCGTCGTCCAGAA
TCGCGAAATTGTCCTCCCGGAAGTGGAGCAAATTCTCATTGAAGCACTTG
CTGCTTTCGTTGTGCAATTTGGTCATCACAGGCTTGATGTTCTTAACTCC
TGCAGTTTGCGACAAGTCCGTGAAATAGTCGATTTGCTTGGGACCCAGCA
TGTGGGCATGGCGTTTTCTTAGTCCCTCCGCCCACAGTTTGCCCATCCTA
TCGCGGGTGTCCTTGAGCATATCCTCCGTGGACGGCAACTCGTTGGATCC
GTTGTAGTAGCTCATGATGAACCTCGCTTGGATGTCCATCATTTGGGCGG
CACAAACGTAAAACGGCAGTCCGATCAGAGCCATGGATGGGTTCCTGATG
TTGATGCACTGCTTGTACAGCTCCTGGACGTAGTTGTCCTCCACATAGAT
GCCCGAGTCGACGGTCAGGAAGGGAAAGGCGTACTTGTAACCTGTGCAAA
AGAAGACGGTGTCGAACTCCTGGTACGATCCGTCCACGAAAAAGGCTCCC
TTCTCATCGAGCTCCCGCACATCGGGTTTCTGCTGTACGTTCTCGAAGAA
TGAGTGTTGCCCGATATCGGTCAAGTGGTGACTTATGGTGACCCGATCCG
CCGTTCGGGAAATGATGTTCGACAGGTCCATGCCACTGGGACCAGCTCCA
ATGACCAGAACGGATTTACCTTCGAAAACCTCCCTACTTCTGAAGTCGTG
GCTGTGCAGGAACTGCCCTTTAAACCTTTCCATATTCGGAATTTGGCTAT
AATTCGGAGTGTGGTAGTGGCCATTGGCCACCAAGACCTTGTCGAAGTAC
TGGAACTCTATCTTGTTGGTGACCAAGTCTTTGAAAAGTACTTGCCACTT
TGTTTTCCTCT

BO08222.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG3006-PA 1251 Fmo-1-RA 356..1248 911..19 4465 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:35:02
Subject Length Description Subject Range Query Range Score Percent Strand
Fmo-1-RA 1454 CG3006-RA 460..1352 911..19 4465 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:34:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23963772..23964310 722..184 2695 100 Minus
2R 25286936 2R 23963542..23963721 895..716 885 99.4 Minus
2R 25286936 2R 23964375..23964539 183..19 825 100 Minus
Blast to na_te.dros performed on 2015-02-13 00:34:58 has no hits.

BO08222.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:22 Download gff for BO08222.3prime
Subject Subject Range Query Range Percent Splice Strand
Fmo-1-PA 356..1251 18..911 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:33:11 Download gff for BO08222.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3006-PA 356..1251 18..911 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:33:40 Download gff for BO08222.3prime
Subject Subject Range Query Range Percent Splice Strand
Fmo-1-RA 460..1352 19..911 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:49:07 Download gff for BO08222.3prime
Subject Subject Range Query Range Percent Splice Strand
Fmo-1-RA 460..1352 19..911 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:49:07 Download gff for BO08222.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23963474..23963493 892..911 100 -> Minus
2R 23963546..23963717 720..891 100 -> Minus
2R 23963775..23964310 184..719 100 -> Minus
2R 23964375..23964539 19..183 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:33:40 Download gff for BO08222.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19851069..19851240 720..891 100 -> Minus
arm_2R 19850997..19851016 892..911 100 -> Minus
arm_2R 19851298..19851833 184..719 100 -> Minus
arm_2R 19851898..19852062 19..183 100   Minus

BO08222.5prime Sequence

922 bp (844 high quality bases) assembled on 2006-01-06

> BO08222.5prime
GAAGTTATCAGTCGACATGATGAGCGTTTGCATAATTGGGGCCGGAACCG
CGGGTCTTTGCTGTGCCCGCCATTCGATTGCAAATGGGTTCGAGACCACT
GTGTTCGAGCTATCTGACCGAATCGGCGGCACCTGGGTTTACAATGAGGC
AACAGGGGCGGTCAATGGCATCGATGTCCACAGCAGCATGTACAAGAACC
TACGAACCAACCTGCCCAAGGAGGTAATGGGCTTCCCGGACTTCGAAATC
GGGGCAAACGAGGCTTCCTATGTGAGATCCGACGAGATCTGCGACTTCCT
TAACCAATACGCGAACCATTTCGACCTGAAGAAGCACATCAAGTTCGATA
GCTATGTGATTCGAGTTTTGCAGAGGAAAACAAAGTGGCAAGTACTTTTC
AAAGACTTGGTCACCAACAAGATAGAGTTCCAGTACTTCGACAAGGTCTT
GGTGGCCAATGGCCACTACCACACTCCGAATTATAGCCAAATTCCGAATA
TGGAAAGGTTTAAAGGGCAGTTCCTGCACAGCCACGACTTCAGAAGTAGG
GAGGTTTTCGAAGGTAAATCCGTTCTGGTCATTGGAGCTGGTCCCAGTGG
CATGGACCTGTCGAACATCATTTCCCGAACGGCGGATCGGGTCACCATAA
GTCACCACTTGACCGATATCGGGCAACACTCATTCTTCGAGAACGTACAG
CAGAAACCCGATGTGCGGGAGCTCGATGAGAAGGGAGCCTTTTTCGTGGA
CGGATCGTACCAGGAGTTCGACACCGTCTTCTTTTGCACAGGTTACAAGT
ACGCCTTTCCCTTCCTGACCGTCGACTCGGGCATCTATGTGGAGGACAAC
TACGTCCAGGAGCTGTACAAGCAGTGCATCAACATCAGGAAACCATCCAT
GGCTCTGATCGGACTGCCCGTT

BO08222.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG3006-PA 1251 Fmo-1-RA 1..902 17..918 4485 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:40:18
Subject Length Description Subject Range Query Range Score Percent Strand
Fmo-1-RA 1454 CG3006-RA 105..1006 17..918 4495 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:40:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23963772..23964129 561..918 1775 99.7 Plus
2R 25286936 2R 23963306..23963496 204..394 955 100 Plus
2R 25286936 2R 23963060..23963247 17..204 940 100 Plus
2R 25286936 2R 23963542..23963721 388..567 885 99.4 Plus
Blast to na_te.dros performed on 2015-02-13 13:40:17 has no hits.

BO08222.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:22 Download gff for BO08222.5prime
Subject Subject Range Query Range Percent Splice Strand
Fmo-1-PA 1..905 17..922 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:33:12 Download gff for BO08222.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3006-PA 1..905 17..922 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:11:10 Download gff for BO08222.5prime
Subject Subject Range Query Range Percent Splice Strand
Fmo-1-RA 100..1009 11..922 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:42:40 Download gff for BO08222.5prime
Subject Subject Range Query Range Percent Splice Strand
Fmo-1-RA 100..1009 11..922 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:42:40 Download gff for BO08222.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23963055..23963247 11..204 98 -> Plus
2R 23963307..23963493 205..391 100 -> Plus
2R 23963546..23963717 392..563 100 -> Plus
2R 23963775..23964132 564..922 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:11:10 Download gff for BO08222.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19850578..19850770 11..204 98 -> Plus
arm_2R 19850830..19851016 205..391 100 -> Plus
arm_2R 19851069..19851240 392..563 100 -> Plus
arm_2R 19851298..19851655 564..922 99   Plus

BO08222.complete Sequence

1282 bp (1282 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ631104

> BO08222.complete
GAAGTTATCAGTCGACATGATGAGCGTTTGCATAATTGGGGCCGGAACCG
CGGGTCTTTGCTGTGCCCGCCATTCGATTGCAAATGGGTTCGAGACCACT
GTGTTCGAGCTATCTGACCGAATCGGCGGCACCTGGGTTTACAATGAGGC
AACAGGGGCGGTCAATGGCATCGATGTCCACAGCAGCATGTACAAGAACC
TACGAACCAACCTGCCCAAGGAGGTAATGGGCTTCCCGGACTTCGAAATC
GGGGCAAACGAGGCTTCCTATGTGAGATCCGACGAGATCTGCGACTTCCT
TAACCAATACGCGAACCATTTCGACCTGAAGAAGCACATCAAGTTCGATA
GCTATGTGATTCGAGTTTTGCAGAGGAAAACAAAGTGGCAAGTACTTTTC
AAAGACTTGGTCACCAACAAGATAGAGTTCCAGTACTTCGACAAGGTCTT
GGTGGCCAATGGCCACTACCACACTCCGAATTATAGCCAAATTCCGAATA
TGGAAAGGTTTAAAGGGCAGTTCCTGCACAGCCACGACTTCAGAAGTAGG
GAGGTTTTCGAAGGTAAATCCGTTCTGGTCATTGGAGCTGGTCCCAGTGG
CATGGACCTGTCGAACATCATTTCCCGAACGGCGGATCGGGTCACCATAA
GTCACCACTTGACCGATATCGGGCAACACTCATTCTTCGAGAACGTACAG
CAGAAACCCGATGTGCGGGAGCTCGATGAGAAGGGAGCCTTTTTCGTGGA
CGGATCGTACCAGGAGTTCGACACCGTCTTCTTTTGCACAGGTTACAAGT
ACGCCTTTCCCTTCCTGACCGTCGACTCGGGCATCTATGTGGAGGACAAC
TACGTCCAGGAGCTGTACAAGCAGTGCATCAACATCAGGAACCCATCCAT
GGCTCTGATCGGACTGCCGTTTTACGTTTGTGCCGCCCAAATGATGGACA
TCCAAGCGAGGTTCATCATGAGCTACTACAACGGATCCAACGAGTTGCCG
TCCACGGAGGATATGCTCAAGGACACCCGCGATAGGATGGGCAAACTGTG
GGCGGAGGGACTAAGAAAACGCCATGCCCACATGCTGGGTCCCAAGCAAA
TCGACTATTTCACGGACTTGTCGCAAACTGCAGGAGTTAAGAACATCAAG
CCTGTGATGACCAAATTGCACAACGAAAGCAGCAAGTGCTTCAATGAGAA
TTTGCTCCACTTCCGGGAGGACAATTTCGCGATTCTGGACGACGAGACAT
TCATTAAACTCAACGCAAGCTTTCTAGACCAT

BO08222.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:37:21
Subject Length Description Subject Range Query Range Score Percent Strand
Fmo-1-RA 1251 CG3006-PA 1..1248 17..1264 6240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:37:22
Subject Length Description Subject Range Query Range Score Percent Strand
Fmo-1-RA 1454 CG3006-RA 105..1352 17..1264 6240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:37:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23963772..23964310 561..1099 2695 100 Plus
2R 25286936 2R 23963306..23963496 204..394 955 100 Plus
2R 25286936 2R 23963060..23963247 17..204 940 100 Plus
2R 25286936 2R 23963542..23963721 388..567 885 99.4 Plus
2R 25286936 2R 23964375..23964539 1100..1264 825 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:37:19 has no hits.

BO08222.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:13 Download gff for BO08222.complete
Subject Subject Range Query Range Percent Splice Strand
Fmo-1-RA 1..1251 17..1265 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:31:58 Download gff for BO08222.complete
Subject Subject Range Query Range Percent Splice Strand
Fmo-1-RA 81..1333 11..1264 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:16 Download gff for BO08222.complete
Subject Subject Range Query Range Percent Splice Strand
Fmo-1-RA 105..1352 17..1266 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:13 Download gff for BO08222.complete
Subject Subject Range Query Range Percent Splice Strand
Fmo-1-RA 81..1333 11..1264 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:29:02 Download gff for BO08222.complete
Subject Subject Range Query Range Percent Splice Strand
Fmo-1-RA 105..1352 17..1266 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:29:02 Download gff for BO08222.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23963060..23963247 17..204 100 -> Plus
2R 23963307..23963493 205..391 100 -> Plus
2R 23963546..23963717 392..563 100 -> Plus
2R 23963775..23964310 564..1099 100 -> Plus
2R 23964375..23964539 1100..1266 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:16 Download gff for BO08222.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19850583..19850770 17..204 100 -> Plus
arm_2R 19850830..19851016 205..391 100 -> Plus
arm_2R 19851069..19851240 392..563 100 -> Plus
arm_2R 19851298..19851833 564..1099 100 -> Plus
arm_2R 19851898..19852062 1100..1266 98   Plus

BO08222.pep Sequence

Translation from 16 to 1282

> BO08222.pep
MMSVCIIGAGTAGLCCARHSIANGFETTVFELSDRIGGTWVYNEATGAVN
GIDVHSSMYKNLRTNLPKEVMGFPDFEIGANEASYVRSDEICDFLNQYAN
HFDLKKHIKFDSYVIRVLQRKTKWQVLFKDLVTNKIEFQYFDKVLVANGH
YHTPNYSQIPNMERFKGQFLHSHDFRSREVFEGKSVLVIGAGPSGMDLSN
IISRTADRVTISHHLTDIGQHSFFENVQQKPDVRELDEKGAFFVDGSYQE
FDTVFFCTGYKYAFPFLTVDSGIYVEDNYVQELYKQCINIRNPSMALIGL
PFYVCAAQMMDIQARFIMSYYNGSNELPSTEDMLKDTRDRMGKLWAEGLR
KRHAHMLGPKQIDYFTDLSQTAGVKNIKPVMTKLHNESSKCFNENLLHFR
EDNFAILDDETFIKLNASFLDH

BO08222.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:19:22
Subject Length Description Subject Range Query Range Score Percent Strand
Fmo-1-PA 416 CG3006-PA 1..416 1..416 2214 100 Plus
Fmo-2-PA 429 CG3174-PA 11..423 4..414 969 44.1 Plus