Clone Sequence Records
BO08222.3prime Sequence
911 bp (829 high quality bases) assembled on 2006-01-06
> BO08222.3prime
ATGGTCTAGAAAGCTTGCGTTGAGTTTAATGAATGTCTCGTCGTCCAGAA
TCGCGAAATTGTCCTCCCGGAAGTGGAGCAAATTCTCATTGAAGCACTTG
CTGCTTTCGTTGTGCAATTTGGTCATCACAGGCTTGATGTTCTTAACTCC
TGCAGTTTGCGACAAGTCCGTGAAATAGTCGATTTGCTTGGGACCCAGCA
TGTGGGCATGGCGTTTTCTTAGTCCCTCCGCCCACAGTTTGCCCATCCTA
TCGCGGGTGTCCTTGAGCATATCCTCCGTGGACGGCAACTCGTTGGATCC
GTTGTAGTAGCTCATGATGAACCTCGCTTGGATGTCCATCATTTGGGCGG
CACAAACGTAAAACGGCAGTCCGATCAGAGCCATGGATGGGTTCCTGATG
TTGATGCACTGCTTGTACAGCTCCTGGACGTAGTTGTCCTCCACATAGAT
GCCCGAGTCGACGGTCAGGAAGGGAAAGGCGTACTTGTAACCTGTGCAAA
AGAAGACGGTGTCGAACTCCTGGTACGATCCGTCCACGAAAAAGGCTCCC
TTCTCATCGAGCTCCCGCACATCGGGTTTCTGCTGTACGTTCTCGAAGAA
TGAGTGTTGCCCGATATCGGTCAAGTGGTGACTTATGGTGACCCGATCCG
CCGTTCGGGAAATGATGTTCGACAGGTCCATGCCACTGGGACCAGCTCCA
ATGACCAGAACGGATTTACCTTCGAAAACCTCCCTACTTCTGAAGTCGTG
GCTGTGCAGGAACTGCCCTTTAAACCTTTCCATATTCGGAATTTGGCTAT
AATTCGGAGTGTGGTAGTGGCCATTGGCCACCAAGACCTTGTCGAAGTAC
TGGAACTCTATCTTGTTGGTGACCAAGTCTTTGAAAAGTACTTGCCACTT
TGTTTTCCTCT
BO08222.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3006-PA | 1251 | Fmo-1-RA | 356..1248 | 911..19 | 4465 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:35:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fmo-1-RA | 1454 | CG3006-RA | 460..1352 | 911..19 | 4465 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:34:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23963772..23964310 | 722..184 | 2695 | 100 | Minus |
2R | 25286936 | 2R | 23963542..23963721 | 895..716 | 885 | 99.4 | Minus |
2R | 25286936 | 2R | 23964375..23964539 | 183..19 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:34:58 has no hits.
BO08222.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:22 Download gff for
BO08222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmo-1-PA | 356..1251 | 18..911 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:33:11 Download gff for
BO08222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3006-PA | 356..1251 | 18..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:33:40 Download gff for
BO08222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmo-1-RA | 460..1352 | 19..911 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:49:07 Download gff for
BO08222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmo-1-RA | 460..1352 | 19..911 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:49:07 Download gff for
BO08222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23963474..23963493 | 892..911 | 100 | -> | Minus |
2R | 23963546..23963717 | 720..891 | 100 | -> | Minus |
2R | 23963775..23964310 | 184..719 | 100 | -> | Minus |
2R | 23964375..23964539 | 19..183 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:33:40 Download gff for
BO08222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19851069..19851240 | 720..891 | 100 | -> | Minus |
arm_2R | 19850997..19851016 | 892..911 | 100 | -> | Minus |
arm_2R | 19851298..19851833 | 184..719 | 100 | -> | Minus |
arm_2R | 19851898..19852062 | 19..183 | 100 | | Minus |
BO08222.5prime Sequence
922 bp (844 high quality bases) assembled on 2006-01-06
> BO08222.5prime
GAAGTTATCAGTCGACATGATGAGCGTTTGCATAATTGGGGCCGGAACCG
CGGGTCTTTGCTGTGCCCGCCATTCGATTGCAAATGGGTTCGAGACCACT
GTGTTCGAGCTATCTGACCGAATCGGCGGCACCTGGGTTTACAATGAGGC
AACAGGGGCGGTCAATGGCATCGATGTCCACAGCAGCATGTACAAGAACC
TACGAACCAACCTGCCCAAGGAGGTAATGGGCTTCCCGGACTTCGAAATC
GGGGCAAACGAGGCTTCCTATGTGAGATCCGACGAGATCTGCGACTTCCT
TAACCAATACGCGAACCATTTCGACCTGAAGAAGCACATCAAGTTCGATA
GCTATGTGATTCGAGTTTTGCAGAGGAAAACAAAGTGGCAAGTACTTTTC
AAAGACTTGGTCACCAACAAGATAGAGTTCCAGTACTTCGACAAGGTCTT
GGTGGCCAATGGCCACTACCACACTCCGAATTATAGCCAAATTCCGAATA
TGGAAAGGTTTAAAGGGCAGTTCCTGCACAGCCACGACTTCAGAAGTAGG
GAGGTTTTCGAAGGTAAATCCGTTCTGGTCATTGGAGCTGGTCCCAGTGG
CATGGACCTGTCGAACATCATTTCCCGAACGGCGGATCGGGTCACCATAA
GTCACCACTTGACCGATATCGGGCAACACTCATTCTTCGAGAACGTACAG
CAGAAACCCGATGTGCGGGAGCTCGATGAGAAGGGAGCCTTTTTCGTGGA
CGGATCGTACCAGGAGTTCGACACCGTCTTCTTTTGCACAGGTTACAAGT
ACGCCTTTCCCTTCCTGACCGTCGACTCGGGCATCTATGTGGAGGACAAC
TACGTCCAGGAGCTGTACAAGCAGTGCATCAACATCAGGAAACCATCCAT
GGCTCTGATCGGACTGCCCGTT
BO08222.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:19:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3006-PA | 1251 | Fmo-1-RA | 1..902 | 17..918 | 4485 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:40:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fmo-1-RA | 1454 | CG3006-RA | 105..1006 | 17..918 | 4495 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:40:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23963772..23964129 | 561..918 | 1775 | 99.7 | Plus |
2R | 25286936 | 2R | 23963306..23963496 | 204..394 | 955 | 100 | Plus |
2R | 25286936 | 2R | 23963060..23963247 | 17..204 | 940 | 100 | Plus |
2R | 25286936 | 2R | 23963542..23963721 | 388..567 | 885 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:40:17 has no hits.
BO08222.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:22 Download gff for
BO08222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmo-1-PA | 1..905 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:33:12 Download gff for
BO08222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3006-PA | 1..905 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:11:10 Download gff for
BO08222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmo-1-RA | 100..1009 | 11..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:42:40 Download gff for
BO08222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmo-1-RA | 100..1009 | 11..922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:42:40 Download gff for
BO08222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23963055..23963247 | 11..204 | 98 | -> | Plus |
2R | 23963307..23963493 | 205..391 | 100 | -> | Plus |
2R | 23963546..23963717 | 392..563 | 100 | -> | Plus |
2R | 23963775..23964132 | 564..922 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:11:10 Download gff for
BO08222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19850578..19850770 | 11..204 | 98 | -> | Plus |
arm_2R | 19850830..19851016 | 205..391 | 100 | -> | Plus |
arm_2R | 19851069..19851240 | 392..563 | 100 | -> | Plus |
arm_2R | 19851298..19851655 | 564..922 | 99 | | Plus |
BO08222.complete Sequence
1282 bp (1282 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631104
> BO08222.complete
GAAGTTATCAGTCGACATGATGAGCGTTTGCATAATTGGGGCCGGAACCG
CGGGTCTTTGCTGTGCCCGCCATTCGATTGCAAATGGGTTCGAGACCACT
GTGTTCGAGCTATCTGACCGAATCGGCGGCACCTGGGTTTACAATGAGGC
AACAGGGGCGGTCAATGGCATCGATGTCCACAGCAGCATGTACAAGAACC
TACGAACCAACCTGCCCAAGGAGGTAATGGGCTTCCCGGACTTCGAAATC
GGGGCAAACGAGGCTTCCTATGTGAGATCCGACGAGATCTGCGACTTCCT
TAACCAATACGCGAACCATTTCGACCTGAAGAAGCACATCAAGTTCGATA
GCTATGTGATTCGAGTTTTGCAGAGGAAAACAAAGTGGCAAGTACTTTTC
AAAGACTTGGTCACCAACAAGATAGAGTTCCAGTACTTCGACAAGGTCTT
GGTGGCCAATGGCCACTACCACACTCCGAATTATAGCCAAATTCCGAATA
TGGAAAGGTTTAAAGGGCAGTTCCTGCACAGCCACGACTTCAGAAGTAGG
GAGGTTTTCGAAGGTAAATCCGTTCTGGTCATTGGAGCTGGTCCCAGTGG
CATGGACCTGTCGAACATCATTTCCCGAACGGCGGATCGGGTCACCATAA
GTCACCACTTGACCGATATCGGGCAACACTCATTCTTCGAGAACGTACAG
CAGAAACCCGATGTGCGGGAGCTCGATGAGAAGGGAGCCTTTTTCGTGGA
CGGATCGTACCAGGAGTTCGACACCGTCTTCTTTTGCACAGGTTACAAGT
ACGCCTTTCCCTTCCTGACCGTCGACTCGGGCATCTATGTGGAGGACAAC
TACGTCCAGGAGCTGTACAAGCAGTGCATCAACATCAGGAACCCATCCAT
GGCTCTGATCGGACTGCCGTTTTACGTTTGTGCCGCCCAAATGATGGACA
TCCAAGCGAGGTTCATCATGAGCTACTACAACGGATCCAACGAGTTGCCG
TCCACGGAGGATATGCTCAAGGACACCCGCGATAGGATGGGCAAACTGTG
GGCGGAGGGACTAAGAAAACGCCATGCCCACATGCTGGGTCCCAAGCAAA
TCGACTATTTCACGGACTTGTCGCAAACTGCAGGAGTTAAGAACATCAAG
CCTGTGATGACCAAATTGCACAACGAAAGCAGCAAGTGCTTCAATGAGAA
TTTGCTCCACTTCCGGGAGGACAATTTCGCGATTCTGGACGACGAGACAT
TCATTAAACTCAACGCAAGCTTTCTAGACCAT
BO08222.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:37:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fmo-1-RA | 1251 | CG3006-PA | 1..1248 | 17..1264 | 6240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:37:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fmo-1-RA | 1454 | CG3006-RA | 105..1352 | 17..1264 | 6240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:37:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23963772..23964310 | 561..1099 | 2695 | 100 | Plus |
2R | 25286936 | 2R | 23963306..23963496 | 204..394 | 955 | 100 | Plus |
2R | 25286936 | 2R | 23963060..23963247 | 17..204 | 940 | 100 | Plus |
2R | 25286936 | 2R | 23963542..23963721 | 388..567 | 885 | 99.4 | Plus |
2R | 25286936 | 2R | 23964375..23964539 | 1100..1264 | 825 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:37:19 has no hits.
BO08222.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:13 Download gff for
BO08222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmo-1-RA | 1..1251 | 17..1265 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:31:58 Download gff for
BO08222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmo-1-RA | 81..1333 | 11..1264 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:16 Download gff for
BO08222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmo-1-RA | 105..1352 | 17..1266 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:13 Download gff for
BO08222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmo-1-RA | 81..1333 | 11..1264 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:29:02 Download gff for
BO08222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmo-1-RA | 105..1352 | 17..1266 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:29:02 Download gff for
BO08222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23963060..23963247 | 17..204 | 100 | -> | Plus |
2R | 23963307..23963493 | 205..391 | 100 | -> | Plus |
2R | 23963546..23963717 | 392..563 | 100 | -> | Plus |
2R | 23963775..23964310 | 564..1099 | 100 | -> | Plus |
2R | 23964375..23964539 | 1100..1266 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:16 Download gff for
BO08222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19850583..19850770 | 17..204 | 100 | -> | Plus |
arm_2R | 19850830..19851016 | 205..391 | 100 | -> | Plus |
arm_2R | 19851069..19851240 | 392..563 | 100 | -> | Plus |
arm_2R | 19851298..19851833 | 564..1099 | 100 | -> | Plus |
arm_2R | 19851898..19852062 | 1100..1266 | 98 | | Plus |
BO08222.pep Sequence
Translation from 16 to 1282
> BO08222.pep
MMSVCIIGAGTAGLCCARHSIANGFETTVFELSDRIGGTWVYNEATGAVN
GIDVHSSMYKNLRTNLPKEVMGFPDFEIGANEASYVRSDEICDFLNQYAN
HFDLKKHIKFDSYVIRVLQRKTKWQVLFKDLVTNKIEFQYFDKVLVANGH
YHTPNYSQIPNMERFKGQFLHSHDFRSREVFEGKSVLVIGAGPSGMDLSN
IISRTADRVTISHHLTDIGQHSFFENVQQKPDVRELDEKGAFFVDGSYQE
FDTVFFCTGYKYAFPFLTVDSGIYVEDNYVQELYKQCINIRNPSMALIGL
PFYVCAAQMMDIQARFIMSYYNGSNELPSTEDMLKDTRDRMGKLWAEGLR
KRHAHMLGPKQIDYFTDLSQTAGVKNIKPVMTKLHNESSKCFNENLLHFR
EDNFAILDDETFIKLNASFLDH
BO08222.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:19:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fmo-1-PA | 416 | CG3006-PA | 1..416 | 1..416 | 2214 | 100 | Plus |
Fmo-2-PA | 429 | CG3174-PA | 11..423 | 4..414 | 969 | 44.1 | Plus |