Clone BO08230 Report

Search the DGRC for BO08230

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:82
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptCyp6d4-RA
Protein status:BO08230.pep: validated full length
Sequenced Size:1579

Clone Sequence Records

BO08230.3prime Sequence

873 bp (872 high quality bases) assembled on 2006-01-06

> BO08230.3prime
ATGGTCTAGAAAGCTTGCTGATAATTTAGGCACTCTTTTGGACAAACGCA
CTCGCACTCCATGTTTGGGAATCAAGGCAATGCCACTGTTCTCGAACTCT
ATTTCGCTCCTGCTCATCACCTCGACATTGAAGTTCTGTAGGATCTTGAT
GATGGCCAGTTTGGAGTTAATACGACCCATCCTCTGGGCAATGCAAATCC
TGGGACCCTCGCCAAACGGCATGAATGCAGTGGGATTATAATTGCGACTC
TCCTCCGAGAAGCGTTCGGGATCATAGGTCTCGGGATCCGGGAAGTACTC
TGCATCATGGTGAATGCCGTACAGGGAGATCACAACTGGCGTTCCCTTCG
GAATGACGTGGTTGGTGTCGGGTACTGTGTAGTCCTGGGTGCATTCACGA
TTCAGAATGGGAAGACCCGGATATTTGCGAATGGTTTCCTGCACACACAG
GTCCAAAAATTCCATCTTGTTCAGGGAATCGTAGGTGATCTTTCCGTCGT
TTTTGGCCAGTGTCTCGTCCACTTCATCCTGCAGGCGCTTCAGTAGCTCT
GGATACTGAGCCAGCTCGTAGATGGTAAAGGCTGCAGTCGATCCGGTGGT
CTCCTGACCAGCGATGTAGAATATAAAAGCCTGAGCGGTGATGGCCTCCA
AGGATATGGTTTTAATATGACCATCGGGTGTCTTCTGAATGCTAAAGGAC
TTCTCGTCATTCTCGTCTATCTTGCCGGTATTCCTCAGCTGAATGAGCAA
CTGCAACAGATCCTTGCGCACTATTCCATGTTTCTCGCGATACTCAACGG
TTTCCTTGACAATCTGCAACATGGCCAGGCCAACTGGATTTTTTAAACCT
ATTCTGAATAGGAACTGTGCTAT

BO08230.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG12800-PA 1548 Cyp6d4-RA 691..1545 873..19 4250 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:00:50
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp6d4-RA 1872 CG12800-RA 768..1622 873..19 4260 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22699404..22700057 672..19 3270 100 Minus
3R 32079331 3R 22699143..22699346 873..670 1005 99.5 Minus
Blast to na_te.dros performed on 2015-02-13 16:00:49 has no hits.

BO08230.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:36 Download gff for BO08230.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12800-PA 691..1548 15..873 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:33:30 Download gff for BO08230.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12800-PA 691..1548 15..873 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 16:00:03 Download gff for BO08230.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp6d4-RA 768..1630 11..873 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:35:39 Download gff for BO08230.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp6d4-RA 768..1630 11..873 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:35:39 Download gff for BO08230.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22699143..22699344 672..873 99 -> Minus
3R 22699405..22700065 11..671 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 16:00:03 Download gff for BO08230.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18524865..18525066 672..873 99 -> Minus
arm_3R 18525127..18525787 11..671 99   Minus

BO08230.5prime Sequence

866 bp (752 high quality bases) assembled on 2006-01-06

> BO08230.5prime
GAAGTTATCAGTCGACATGTTTTCGCTGATTTTATTGGCCGTAACGCTAT
TGACTTTGGCGTGGTTCTATCTGAAGCGCCACTATGAGTACTGGGAGCGA
CGCGGATTTCCATTTGAAAAACACTCCGGGATTCCATTCGGTTGCTTGGA
CAGTGTGTGGCGGCAGGAGAAGAGCATGGGCTTGGCCATCTACGATGTGT
ATGTGAAGAGTAAAGAGCGCGTCTTGGGCATTTATTTGCTCTTCCGTCCG
GCTGTTTTGATCAGAGACGCCGATCTGGCTCGCCGTGTTCTGGCCCAGGA
TTTCGCCAGTTTCCACGATCGCGGCGTTTACGTTGATGAGGAACGGGATC
CCCTGTCGGCCAATATCTTCTCGCTTCGCGGTCAGAGCTGGCGATCGATG
AGGCACATGTTGTCGCCATGTTTCACATCCGGAAAGTTGAAGAGCATGTT
CAGCACATCCGAGGATATTGGTGACAAGATGGTGGCCCATCTGCAAAAGG
AGCTGCCGGAGGAGGGCTTCAAGGAGGTGGACATAAAGAAAGTGATGCAA
AACTATGCCATTGACATTATAGCCTCGACTATCTTTGGCTTGGATGTAAA
TAGCTTCGAAAATCCTGATAACAAGTTCCGTAAACTGGTGTCGTTGGCCA
GAGCCAATAATAGATTCAATGCCATGTTCGGCATGATGATCTTCCTGGTG
CCCTCGATAGCACAGTTCCTATTCAGAATAGGTTTTAAAAATCCAGTTGG
CCTGGCCATGTTGCAGATTGTCAAGGAAACCGTTGAGTATCGCGAGAAAC
ATGGAATAGTGCGCAAGGATCTGTTGCAGTTGCTCATTCAGCTGAGGAAT
ACCGGCAAGATAGACG

BO08230.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG12800-PA 1548 Cyp6d4-RA 1..850 17..866 4250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:35:25
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp6d4-RA 1872 CG12800-RA 72..927 12..866 4255 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:35:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22698396..22699085 17..706 3450 100 Plus
3R 32079331 3R 22699142..22699302 706..866 805 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:35:22 has no hits.

BO08230.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:37 Download gff for BO08230.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12800-PA 1..850 17..866 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:33:31 Download gff for BO08230.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12800-PA 1..850 17..866 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:33:45 Download gff for BO08230.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp6d4-RA 68..927 6..866 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:49:56 Download gff for BO08230.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp6d4-RA 68..927 6..866 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:49:56 Download gff for BO08230.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22698386..22699084 6..705 99 -> Plus
3R 22699142..22699302 706..866 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:33:45 Download gff for BO08230.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18524108..18524806 6..705 99 -> Plus
arm_3R 18524864..18525024 706..866 100   Plus

BO08230.complete Sequence

1579 bp (1579 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ631107

> BO08230.complete
GAAGTTATCAGTCGACATGTTTTCGCTGATTTTATTGGCCGTAACGCTAT
TGACTTTGGCGTGGTTCTATCTGAAGCGCCACTATGAGTACTGGGAGCGA
CGCGGATTTCCATTTGAAAAACACTCCGGGATTCCATTCGGTTGCTTGGA
CAGTGTGTGGCGGCAGGAGAAGAGCATGGGCTTGGCCATCTACGATGTGT
ATGTGAAGAGTAAAGAGCGCGTCTTGGGCATTTATTTGCTCTTCCGTCCG
GCTGTTTTGATCAGAGACGCCGATCTGGCTCGCCGTGTTCTGGCCCAGGA
TTTCGCCAGTTTCCACGATCGCGGCGTTTACGTTGATGAGGAACGGGATC
CCCTGTCGGCCAATATCTTCTCGCTTCGCGGTCAGAGCTGGCGATCGATG
AGGCACATGTTGTCGCCATGTTTCACATCCGGAAAGTTGAAGAGCATGTT
CAGCACATCCGAGGATATTGGTGACAAGATGGTGGCCCATCTGCAAAAGG
AGCTGCCGGAGGAGGGCTTCAAGGAGGTGGACATAAAGAAAGTGATGCAA
AACTATGCCATTGACATTATAGCCTCGACTATCTTTGGCTTGGATGTAAA
TAGCTTCGAAAATCCTGATAACAAGTTCCGTAAACTGGTGTCGTTGGCCA
GAGCCAATAATAGATTCAATGCCATGTTCGGCATGATGATCTTCCTGGTG
CCCTCGATAGCACAGTTCCTATTCAGAATAGGTTTTAAAAATCCAGTTGG
CCTGGCCATGTTGCAGATTGTCAAGGAAACCGTTGAGTATCGCGAGAAAC
ATGGAATAGTGCGCAAGGATCTGTTGCAGTTGCTCATTCAGCTGAGGAAT
ACCGGCAAGATAGACGAGAATGACGAGAAGTCCTTTAGCATTCAGAAGAC
ACCCGATGGTCATATTAAAACCATATCCTTGGAGGCCATCACCGCTCAGG
CTTTTATATTCTACATCGCTGGTCAGGAGACCACCGGATCGACTGCAGCC
TTTACCATCTACGAGCTGGCTCAGTATCCAGAGCTACTGAAGCGCCTGCA
GGATGAAGTGGACGAGACACTGGCCAAAAACGACGGAAAGATCACCTACG
ATTCCCTGAACAAGATGGAATTTTTGGACCTGTGTGTGCAGGAAACCATT
CGCAAATATCCGGGTCTTCCCATTCTGAATCGTGAATGCACCCAGGACTA
CACAGTACCCGACACCAACCACGTCATTCCGAAGGGAACGCCAGTTGTGA
TCTCCCTGTACGGCATTCACCATGATGCAGAGTACTTCCCGGATCCCGAG
ACCTATGATCCCGAACGCTTCTCGGAGGAGAGTCGCAATTATAATCCCAC
TGCATTCATGCCGTTTGGCGAGGGTCCCAGGATTTGCATTGCCCAGAGGA
TGGGTCGTATTAACTCCAAACTGGCCATCATCAAGATCCTACAGAACTTC
AATGTCGAGGTGATGAGCAGGAGCGAAATAGAGTTCGAGAACAGTGGCAT
TGCCTTGATTCCCAAACATGGAGTGCGAGTGCGTTTGTCCAAAAGAGTGC
CTAAATTATCAGCAAGCTTTCTAGACCAT

BO08230.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:52:39
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp6d4-RA 1548 CG12800-PA 1..1545 17..1561 7725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:52:40
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp6d4-RA 1872 CG12800-RA 78..1622 17..1561 7725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:52:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22698396..22699085 17..706 3450 100 Plus
3R 32079331 3R 22699404..22700057 908..1561 3270 100 Plus
3R 32079331 3R 22699142..22699346 706..910 1025 100 Plus
Blast to na_te.dros performed on 2014-11-27 12:52:37 has no hits.

BO08230.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:03 Download gff for BO08230.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp6d4-RA 1..1548 17..1565 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:31:44 Download gff for BO08230.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp6d4-RA 62..1624 6..1569 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:46:40 Download gff for BO08230.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp6d4-RA 85..1622 24..1563 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:03 Download gff for BO08230.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp6d4-RA 62..1624 6..1569 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:33 Download gff for BO08230.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp6d4-RA 85..1622 24..1563 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:33 Download gff for BO08230.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22698403..22699084 24..705 100 -> Plus
3R 22699142..22699344 706..908 100 -> Plus
3R 22699405..22700057 909..1563 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:46:40 Download gff for BO08230.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18524125..18524806 24..705 100 -> Plus
arm_3R 18524864..18525066 706..908 100 -> Plus
arm_3R 18525127..18525779 909..1563 99   Plus

BO08230.pep Sequence

Translation from 16 to 1579

> BO08230.pep
MFSLILLAVTLLTLAWFYLKRHYEYWERRGFPFEKHSGIPFGCLDSVWRQ
EKSMGLAIYDVYVKSKERVLGIYLLFRPAVLIRDADLARRVLAQDFASFH
DRGVYVDEERDPLSANIFSLRGQSWRSMRHMLSPCFTSGKLKSMFSTSED
IGDKMVAHLQKELPEEGFKEVDIKKVMQNYAIDIIASTIFGLDVNSFENP
DNKFRKLVSLARANNRFNAMFGMMIFLVPSIAQFLFRIGFKNPVGLAMLQ
IVKETVEYREKHGIVRKDLLQLLIQLRNTGKIDENDEKSFSIQKTPDGHI
KTISLEAITAQAFIFYIAGQETTGSTAAFTIYELAQYPELLKRLQDEVDE
TLAKNDGKITYDSLNKMEFLDLCVQETIRKYPGLPILNRECTQDYTVPDT
NHVIPKGTPVVISLYGIHHDAEYFPDPETYDPERFSEESRNYNPTAFMPF
GEGPRICIAQRMGRINSKLAIIKILQNFNVEVMSRSEIEFENSGIALIPK
HGVRVRLSKRVPKLSASFLDH

BO08230.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:19:43
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp6d4-PA 515 CG12800-PA 1..515 1..515 2663 100 Plus
Cyp6d2-PA 512 CG4373-PA 4..511 5..510 1398 50.4 Plus
Cyp6d5-PA 508 CG3050-PA 4..505 5..508 1388 51.7 Plus
Cyp6a14-PE 509 CG8687-PE 2..508 1..509 812 34.5 Plus
Cyp6a14-PC 509 CG8687-PC 2..508 1..509 812 34.5 Plus