Clone Sequence Records
BO08231.3prime Sequence
906 bp (789 high quality bases) assembled on 2006-01-06
> BO08231.3prime
ATGGTCTAGAAAGCTTGCATACAATCGACACTGCCTTCGCCTGGGCGAGG
GGCCACAGGAGAAGGCCTCCCGAAATGGCTCAAAGTGGGCAACTGCATCG
TTGACCCTCTTCCTATCGCTGCCATGATCGTGCGCCTGCAAGAGCTCCTT
ATCGGAGCAGAAGAATTGGGCAAAGTTATGAAAGAACTGCTGCTTCTGAG
TGACCAACTCCTCGGCACTTCGATTCCGCTTATGATCCGTTTGTGCGGTG
TCAAAGTAGGCGGAATAGGCCAGTTCCAAGCCACTGGCGTCCGCGAACTT
TTCATACCGCTTCCTCCCGAATCTTCTGCGCAAACAGCCAAGCTCCTGCT
GGAATCGCGGATTCCTATCAAGCTCCCTGTCCACGGCGCTACTTCCCACT
CCGTGCGAGGAGAAGGTCATGCCCTCGGAATCAAAGCCGTGCGAGAGCTC
GTGGCCCAGGATGAAGCCCAGTGCACTGTAGGTAAGTATCGACGGCTGGC
CATGTGTGTAGAACGGCGGTTCCAGGAGCGATAGTGGCACAATTAGCATA
TTCTGTTTGACTATGTAGAACGCAGAGGCATAGGTGCCATACCCACGCAC
TTGGGTGGGATACAAATCGCTCTTGGATATTCGGCTTGGAATCAACTGGC
GGCCGAAGACTATGGCCCATAGTTGGGCGTACTTCTTGTGGGATCTGGAG
TGATTAAGGCCGATATGTAGATTTCCAAAATAATCGCTAGCATTCATGTG
AACATCCCTGTAGTGCCTTTCGATGCGTCGCACCATGGATTGGGCCGAAG
AATTTCTGGGCAGGATGCTCAATCGCAGCCGCATCCTTTTCAATTTGCCC
AAAAGAAAGTGCTGTGTGCTGCGAGTAAAGTTATTCCTGTTCGCCAGAAG
CTTTTG
BO08231.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3239-PB | 1515 | CG3239-RB | 625..1512 | 906..19 | 4440 | 100 | Minus |
| CG3239-PA | 1683 | CG3239-RA | 793..1680 | 906..19 | 4440 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:51:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| frma-RG | 2975 | CG3239-RG | 953..1840 | 906..19 | 4440 | 100 | Minus |
| frma-RF | 1930 | CG3239-RF | 953..1840 | 906..19 | 4440 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:51:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5494149..5495036 | 19..906 | 4440 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 15:51:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jockey2 | 3428 | jockey2 JOCKEY2 3428bp | 2574..2627 | 136..190 | 110 | 69.1 | Plus |
BO08231.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:38 Download gff for
BO08231.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3239-PB | 625..1515 | 18..906 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:33:33 Download gff for
BO08231.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3239-PA | 793..1683 | 18..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:10:04 Download gff for
BO08231.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3239-RC | 931..1824 | 15..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:25:00 Download gff for
BO08231.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| frma-RF | 953..1846 | 15..906 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:25:00 Download gff for
BO08231.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5494143..5495036 | 15..906 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:10:04 Download gff for
BO08231.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5388176..5389069 | 15..906 | 99 | | Plus |
BO08231.5prime Sequence
912 bp (800 high quality bases) assembled on 2006-01-06
> BO08231.5prime
GAAGTTATCAGTCGACATGGACCGACTGGACTACAATTATCAGGAGAAGT
TGGCAGACTTGCTGGATAATGAAAGAGAGGACGACGAGCCACATTTTCTG
CAGCAGTTGAGGAACTTTTACACCGCCTGTCGAAAACCTTTGAGCCAGGA
TCAAGTCCTGCGCATACTGGAGCATCTGATCGTAATGGAGAATATCCAAA
ATGAAGAGCTGTCCGTCGGCTTGACTGCCGCCTTTCGTCTTCAAGTACTC
ATAGATCTAAATGACTCCAATACGTATGACATTTGGAAGCAGTTGATGTC
CCACAGGAAGCATTGGGATCCAAATACAACGAACAGGGAACCCTTAACTC
GCGAAATGTTTGACAAGCTATGGGCCAGCCTGCCAAAAATTCCCTTTCCG
TTTAAGGAGTACTATTGGCGCGAATTAAGCGAGCTGGAAGAGAAAATAAT
GAGCTATGGAAGCGAGGACGATGGCTTTGATAGCGGTGATTTGGTTACGC
GGATACCACCCTTTTGGATGATGCCCTGGCCAAATGGGAATATTACCTAT
GAAAATCTTTCCCAGATGGCCCATTGGCTGGATATAAAAGCCAATGAGTT
CATTCTCACATATATCTATATGCGATTAAAGCTAGTTGCGGAAGGAGTCT
CAACGGAATCCTGGCATATAGATCGCGACCAGTGCGCCGAGCAGTCCAGA
CAGATCCTCAGTCATCCTGCTGCATGGTTGGTAGAGAAGAATCATCCCAG
GCTCAAGGAGGAGCCAGTGCTGCAGGACATTTTCGCGGAGCTGAAGCAGC
GCTTTGGCCAAAAGCTTCTGGCGAACAGGAATAACTTTACTCGCAGCACA
CAGCACTTTCTTTTNGGGCAAATTGAAAAGGATGCGGCTGCGATTGAGCA
TCCTGCCCAGAA
BO08231.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3239-PA | 1683 | CG3239-RA | 1..848 | 17..864 | 4240 | 100 | Plus |
| CG3239-PB | 1515 | CG3239-RB | 1..680 | 185..864 | 3400 | 100 | Plus |
| CG3239-PA | 1683 | CG3239-RA | 845..895 | 862..912 | 236 | 98 | Plus |
| CG3239-PB | 1515 | CG3239-RB | 677..727 | 862..912 | 236 | 98 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:40:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| frma-RG | 2975 | CG3239-RG | 161..1055 | 17..912 | 4455 | 99.9 | Plus |
| frma-RF | 1930 | CG3239-RF | 161..1055 | 17..912 | 4455 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:40:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5494934..5495772 | 912..73 | 4150 | 99.9 | Minus |
| X | 23542271 | X | 5495837..5495892 | 72..17 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:40:37 has no hits.
BO08231.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:39 Download gff for
BO08231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3239-PA | 1..893 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:33:34 Download gff for
BO08231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3239-PA | 1..893 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:50:42 Download gff for
BO08231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3239-RC | 133..1033 | 10..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:07:05 Download gff for
BO08231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| frma-RF | 155..1055 | 10..912 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:07:05 Download gff for
BO08231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5494934..5495772 | 73..912 | 99 | <- | Minus |
| X | 5495837..5495898 | 10..72 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:50:42 Download gff for
BO08231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5388967..5389805 | 73..912 | 99 | <- | Minus |
| arm_X | 5389870..5389931 | 10..72 | 93 | | Minus |
BO08231.complete Sequence
1714 bp (1714 high quality bases) assembled on 2006-08-21
GenBank Submission: FJ631108
> BO08231.complete
GAAGTTATCAGTCGACATGGACCGACTGGACTACAATTATCAGGAGAAGT
TGGCAGACTTGCTGGATAATGAAAGAGAGGACGACGAGCCACATTTTCTG
CAGCAGTTGAGGAACTTTTACACCGCCTGTCGAAAACCTTTGAGCCAGGA
TCAAGTCCTGCGCATACTGGAGCATCTGATCGTAATGGAGAATATCCAAA
ATGAAGAGCTGTCCGTCGGCTTGACTGCCGCCTTTCGTCTTCAAGTACTC
ATAGATCTAAATGACTCCAATACGTATGACATTTGGAAGCAGTTGATGTC
CCACAGGAAGCATTGGGATCCAAATACAACGAACAGGGAACCCTTAACTC
GCGAAATGTTTGACAAGCTATGGGCCAGCCTGCCAAAAATTCCCTTTCCG
TTTAAGGAGTACTATTGGCGCGAATTAAGCGAGCTGGAAGAGAAAATAAT
GAGCTATGGAAGCGAGGACGATGGCTTTGATAGCGGTGATTTGGTTACGC
GGATACCACCCTTTTGGATGATGCCCTGGCCAAATGGGAATATTACCTAT
GAAAATCTTTCCCAGATGGCCCATTGGCTGGATATAAAAGCCAATGAGTT
CATTCTCACATATATCTATATGCGATTAAAGCTAGTTGCGGAAGGAGTCT
CAACGGAATCCTGGCATATAGATCGCGACCAGTGCGCCGAGCAGTCCAGA
CAGATCCTCAGTCATCCTGCTGCATGGTTGGTAGAGAAGAATCATCCCAG
GCTCAAGGAGGAGCCAGTGCTGCAGGACATTTTCGCGGAGCTGAAGCAGC
GCTTTGGCCAAAAGCTTCTGGCGAACAGGAATAACTTTACTCGCAGCACA
CAGCACTTTCTTTTGGGCAAATTGAAAAGGATGCGGCTGCGATTGAGCAT
CCTGCCCAGAAATTCTTCGGCCCAATCCATGGTGCGACGCATCGAAAGGC
ACTACAGGGATGTTCACATGAATGCTAGCGATTATTTTGGAAATCTACAT
ATCGGCCTTAATCACTCCAGATCCCACAAGAAGTACGCCCAACTATGGGC
CATAGTCTTCGGCCGCCAGTTGATTCCAAGCCGAATATCCAAGAGCGATT
TGTATCCCACCCAAGTGCGTGGGTATGGCACCTATGCCTCTGCGTTCTAC
ATAGTCAAACAGAATATGCTAATTGTGCCACTATCGCTCCTGGAACCGCC
GTTCTACACACATGGCCAGCCGTCGATACTTACCTACAGTGCACTGGGCT
TCATCCTGGGCCACGAGCTCTCGCACGGCTTTGATTCCGAGGGCATGACC
TTCTCCTCGCACGGAGTGGGAAGTAGCGCCGTGGACAGGGAGCTTGATAG
GAATCCGCGATTCCAGCAGGAGCTTGGCTGTTTGCGCAGAAGATTCGGGA
GGAAGCGGTATGAAAAGTTCGCGGACGCCAGTGGCTTGGAACTGGCCTAT
TCCGCCTACTTTGACACCGCACAAACGGATCATAAGCGGAATCGAAGTGC
CGAGGAGTTGGTCACTCAGAAGCAGCAGTTCTTTCATAACTTTGCCCAAT
TCTTCTGCTCCGATAAGGAGCTCTTGCAGGCGCACGATCATGGCAGCGAT
AGGAAGAGGGTCAACGATGCAGTTGCCCACTTTGAGCCATTTCGGGAGGC
CTTCTCCTGTGGCCCCTCGCCCAGGCGAAGGCAGTGTCGATTGTATGCAA
GCTTTCTAGACCAT
BO08231.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:43:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| frma-RG | 1836 | CG3239-PG | 154..1833 | 17..1696 | 8400 | 100 | Plus |
| frma-RF | 1836 | CG3239-PF | 154..1833 | 17..1696 | 8400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:43:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| frma-RG | 2975 | CG3239-RG | 161..1840 | 17..1696 | 8400 | 100 | Plus |
| frma-RF | 1930 | CG3239-RF | 161..1840 | 17..1696 | 8400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:43:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5494149..5495772 | 1696..73 | 8120 | 100 | Minus |
| X | 23542271 | X | 5495837..5495892 | 72..17 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:43:06 has no hits.
BO08231.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:12 Download gff for
BO08231.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3239-RA | 1..1683 | 17..1697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:10:32 Download gff for
BO08231.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3239-RA | 133..1824 | 10..1700 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:30 Download gff for
BO08231.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3239-RC | 139..1818 | 17..1698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:12 Download gff for
BO08231.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3239-RA | 133..1824 | 10..1700 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:18 Download gff for
BO08231.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| frma-RF | 161..1840 | 17..1698 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:51:18 Download gff for
BO08231.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5494145..5495772 | 73..1698 | 99 | <- | Minus |
| X | 5495837..5495892 | 17..72 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:30 Download gff for
BO08231.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5388178..5389805 | 73..1698 | 99 | <- | Minus |
| arm_X | 5389870..5389925 | 17..72 | 100 | | Minus |
BO08231.pep Sequence
Translation from 16 to 1714
> BO08231.pep
MDRLDYNYQEKLADLLDNEREDDEPHFLQQLRNFYTACRKPLSQDQVLRI
LEHLIVMENIQNEELSVGLTAAFRLQVLIDLNDSNTYDIWKQLMSHRKHW
DPNTTNREPLTREMFDKLWASLPKIPFPFKEYYWRELSELEEKIMSYGSE
DDGFDSGDLVTRIPPFWMMPWPNGNITYENLSQMAHWLDIKANEFILTYI
YMRLKLVAEGVSTESWHIDRDQCAEQSRQILSHPAAWLVEKNHPRLKEEP
VLQDIFAELKQRFGQKLLANRNNFTRSTQHFLLGKLKRMRLRLSILPRNS
SAQSMVRRIERHYRDVHMNASDYFGNLHIGLNHSRSHKKYAQLWAIVFGR
QLIPSRISKSDLYPTQVRGYGTYASAFYIVKQNMLIVPLSLLEPPFYTHG
QPSILTYSALGFILGHELSHGFDSEGMTFSSHGVGSSAVDRELDRNPRFQ
QELGCLRRRFGRKRYEKFADASGLELAYSAYFDTAQTDHKRNRSAEELVT
QKQQFFHNFAQFFCSDKELLQAHDHGSDRKRVNDAVAHFEPFREAFSCGP
SPRRRQCRLYASFLDH
BO08231.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| frma-PG | 611 | CG3239-PG | 52..611 | 1..560 | 2984 | 100 | Plus |
| frma-PF | 611 | CG3239-PF | 52..611 | 1..560 | 2984 | 100 | Plus |
| CG42370-PA | 655 | CG9508-PA | 295..655 | 188..560 | 350 | 27.4 | Plus |
| CG9507-PA | 684 | CG9507-PA | 324..684 | 201..560 | 336 | 27.3 | Plus |
| CG8550-PA | 633 | CG8550-PA | 65..612 | 2..552 | 316 | 24.7 | Plus |
