Clone Sequence Records
BO08232.3prime Sequence
689 bp (688 high quality bases) assembled on 2006-01-06
> BO08232.3prime
ATGGTCTAGAAAGCTTGCCTTGCAGCAGTTGTTCGTCGGTCGATTTGTTT
CGGTTCCAGTCGGCCTTATGCTGGTTCCCTGATTGTTGGCGCCATCGTTC
TTAGGTAGTTTCTTGGCAATGGCCAAGAAGATGTCGTTCACATTCATGCC
CGTCTTGGCGGAGGTTTCCATGAACAGCAGCCCGTTCTCCTCGGCATATT
GCTTCGCTTCATCGAACTCTACGACGCGAATGTTTGACAAATCTGCCTTG
TTGCCGGCCAGCGCAATGACAATGTTTGGTGAGGCTTGTTTATGCAGTTC
CTTGACCCAGGTCTTCGCACGCTGAAAACTGTCCTGATTCTGTATATCAT
AGACGACAATAGCGGCCTGCGCTCCTCGATAATACATGGGAGCTAAGCTG
TGGTACCGCTCCTGGCCAGCCGTGTCCCAGATCTCGAACTTAACGACAGT
GTCCTCTATGCAAATAGTCTGTGTCAGAAAGGCCGCACCTATCGTGCTCT
CCTGGTACTCGTGGAACTGTCCCTTGACGAAGCGCAGCACCAGTGAGGAC
TTGCCCACAGCGGACTCGCCGAGGAGCACCAACTTGAATTGGCAGCTTTT
GTTCTGCGAGGTGCCATTGGGCCGCTGCGCCGTTCCAGTGCCGCTGGCAC
CGCCGCTGCGTGGAGTGGTTGCCATGTCGACTGATAACT
BO08232.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3664-PA | 660 | Rab5-RA | 1..657 | 675..19 | 3285 | 100 | Minus |
CG3664-PB | 660 | Rab5-RB | 1..657 | 675..19 | 3285 | 100 | Minus |
CG3664-PF | 660 | Rab5-RF | 1..657 | 675..19 | 3285 | 100 | Minus |
CG3664-PD | 660 | Rab5-RD | 1..657 | 675..19 | 3285 | 100 | Minus |
CG3664-PC | 660 | Rab5-RC | 1..657 | 675..19 | 3285 | 100 | Minus |
CG3664-PE | 660 | Rab5-RE | 1..657 | 675..19 | 3285 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:01:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab5-RI | 1775 | CG3664-RI | 274..931 | 676..19 | 3290 | 100 | Minus |
Rab5-RH | 1772 | CG3664-RH | 275..932 | 676..19 | 3290 | 100 | Minus |
Rab5-RG | 1785 | CG3664-RG | 284..941 | 676..19 | 3290 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:01:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2361157..2361429 | 404..676 | 1365 | 100 | Plus |
2L | 23513712 | 2L | 2360633..2360801 | 117..285 | 845 | 100 | Plus |
2L | 23513712 | 2L | 2360971..2361093 | 285..407 | 615 | 100 | Plus |
2L | 23513712 | 2L | 2360472..2360570 | 19..117 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:01:48 has no hits.
BO08232.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:40 Download gff for
BO08232.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab5-PB | 1..660 | 16..675 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:33:36 Download gff for
BO08232.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3664-PE | 1..660 | 16..675 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:13:04 Download gff for
BO08232.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab5-RG | 280..941 | 19..679 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:11:56 Download gff for
BO08232.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab5-RG | 280..941 | 19..679 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:11:56 Download gff for
BO08232.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2360472..2360569 | 19..116 | 100 | <- | Plus |
2L | 2360633..2360801 | 117..285 | 100 | <- | Plus |
2L | 2360972..2361092 | 286..406 | 100 | <- | Plus |
2L | 2361160..2361433 | 407..679 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:13:04 Download gff for
BO08232.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2360472..2360569 | 19..116 | 100 | <- | Plus |
arm_2L | 2360633..2360801 | 117..285 | 100 | <- | Plus |
arm_2L | 2360972..2361092 | 286..406 | 100 | <- | Plus |
arm_2L | 2361160..2361433 | 407..679 | 99 | | Plus |
BO08232.5prime Sequence
689 bp (688 high quality bases) assembled on 2006-01-06
> BO08232.5prime
GAAGTTATCAGTCGACATGGCAACCACTCCACGCAGCGGCGGTGCCAGCG
GCACTGGAACGGCGCAGCGGCCCAATGGCACCTCGCAGAACAAAAGCTGC
CAATTCAAGTTGGTGCTCCTCGGCGAGTCCGCTGTGGGCAAGTCCTCACT
GGTGCTGCGCTTCGTCAAGGGACAGTTCCACGAGTACCAGGAGAGCACGA
TAGGTGCGGCCTTTCTGACACAGACTATTTGCATAGAGGACACTGTCGTT
AAGTTCGAGATCTGGGACACGGCTGGCCAGGAGCGGTACCACAGCTTAGC
TCCCATGTATTATCGAGGAGCGCAGGCCGCTATTGTCGTCTATGATATAC
AGAATCAGGACAGTTTTCAGCGTGCGAAGACCTGGGTCAAGGAACTGCAT
AAACAAGCCTCACCAAACATTGTCATTGCGCTGGCCGGCAACAAGGCAGA
TTTGTCAAACATTCGCGTCGTAGAGTTCGATGAAGCGAAGCAATATGCCG
AGGAGAACGGGCTGCTGTTCATGGAAACCTCCGCCAAGACGGGCATGAAT
GTGAACGACATCTTCTTGGCCATTGCCAAGAAACTACCTAAGAACGATGG
CGCCAACAATCAGGGAACCAGCATAAGGCCGACTGGAACCGAAACAAATC
GACCGACGAACAACTGCTGCAAGGCAAGCTTTCTAGACC
BO08232.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3664-PA | 660 | Rab5-RA | 1..657 | 17..673 | 3285 | 100 | Plus |
CG3664-PB | 660 | Rab5-RB | 1..657 | 17..673 | 3285 | 100 | Plus |
CG3664-PF | 660 | Rab5-RF | 1..657 | 17..673 | 3285 | 100 | Plus |
CG3664-PD | 660 | Rab5-RD | 1..657 | 17..673 | 3285 | 100 | Plus |
CG3664-PC | 660 | Rab5-RC | 1..657 | 17..673 | 3285 | 100 | Plus |
CG3664-PE | 660 | Rab5-RE | 1..657 | 17..673 | 3285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:41:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab5-RI | 1775 | CG3664-RI | 274..931 | 16..673 | 3290 | 100 | Plus |
Rab5-RH | 1772 | CG3664-RH | 275..932 | 16..673 | 3290 | 100 | Plus |
Rab5-RG | 1785 | CG3664-RG | 284..941 | 16..673 | 3290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:40:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2361157..2361429 | 288..16 | 1365 | 100 | Minus |
2L | 23513712 | 2L | 2360633..2360801 | 575..407 | 845 | 100 | Minus |
2L | 23513712 | 2L | 2360971..2361093 | 407..285 | 615 | 100 | Minus |
2L | 23513712 | 2L | 2360472..2360570 | 673..575 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:41:00 has no hits.
BO08232.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:41 Download gff for
BO08232.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab5-PB | 1..660 | 17..676 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:33:37 Download gff for
BO08232.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3664-PE | 1..660 | 17..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:50:43 Download gff for
BO08232.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab5-RG | 280..941 | 13..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:08:35 Download gff for
BO08232.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab5-RG | 280..941 | 13..673 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:08:35 Download gff for
BO08232.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2360972..2361092 | 286..406 | 100 | <- | Minus |
2L | 2361160..2361433 | 13..285 | 99 | | Minus |
2L | 2360472..2360569 | 576..673 | 100 | <- | Minus |
2L | 2360633..2360801 | 407..575 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:50:43 Download gff for
BO08232.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2360472..2360569 | 576..673 | 100 | <- | Minus |
arm_2L | 2360633..2360801 | 407..575 | 100 | <- | Minus |
arm_2L | 2360972..2361092 | 286..406 | 100 | <- | Minus |
arm_2L | 2361160..2361433 | 13..285 | 99 | | Minus |
BO08232.complete Sequence
691 bp (691 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631109
> BO08232.complete
GAAGTTATCAGTCGACATGGCAACCACTCCACGCAGCGGCGGTGCCAGCG
GCACTGGAACGGCGCAGCGGCCCAATGGCACCTCGCAGAACAAAAGCTGC
CAATTCAAGTTGGTGCTCCTCGGCGAGTCCGCTGTGGGCAAGTCCTCACT
GGTGCTGCGCTTCGTCAAGGGACAGTTCCACGAGTACCAGGAGAGCACGA
TAGGTGCGGCCTTTCTGACACAGACTATTTGCATAGAGGACACTGTCGTT
AAGTTCGAGATCTGGGACACGGCTGGCCAGGAGCGGTACCACAGCTTAGC
TCCCATGTATTATCGAGGAGCGCAGGCCGCTATTGTCGTCTATGATATAC
AGAATCAGGACAGTTTTCAGCGTGCGAAGACCTGGGTCAAGGAACTGCAT
AAACAAGCCTCACCAAACATTGTCATTGCGCTGGCCGGCAACAAGGCAGA
TTTGTCAAACATTCGCGTCGTAGAGTTCGATGAAGCGAAGCAATATGCCG
AGGAGAACGGGCTGCTGTTCATGGAAACCTCCGCCAAGACGGGCATGAAT
GTGAACGACATCTTCTTGGCCATTGCCAAGAAACTACCTAAGAACGATGG
CGCCAACAATCAGGGAACCAGCATAAGGCCGACTGGAACCGAAACAAATC
GACCGACGAACAACTGCTGCAAGGCAAGCTTTCTAGACCAT
BO08232.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:39:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab5-RI | 660 | CG3664-PI | 1..657 | 17..673 | 3285 | 100 | Plus |
Rab5-RH | 660 | CG3664-PH | 1..657 | 17..673 | 3285 | 100 | Plus |
Rab5-RG | 660 | CG3664-PG | 1..657 | 17..673 | 3285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:39:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab5-RI | 1775 | CG3664-RI | 274..931 | 16..673 | 3290 | 100 | Plus |
Rab5-RH | 1772 | CG3664-RH | 275..932 | 16..673 | 3290 | 100 | Plus |
Rab5-RG | 1785 | CG3664-RG | 284..941 | 16..673 | 3290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:39:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2361157..2361429 | 288..16 | 1365 | 100 | Minus |
2L | 23513712 | 2L | 2360633..2360801 | 575..407 | 845 | 100 | Minus |
2L | 23513712 | 2L | 2360971..2361093 | 407..285 | 615 | 100 | Minus |
2L | 23513712 | 2L | 2360472..2360570 | 673..575 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:39:17 has no hits.
BO08232.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:33 Download gff for
BO08232.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab5-RF | 1..660 | 17..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:32:38 Download gff for
BO08232.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab5-RF | 216..877 | 13..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:49:49 Download gff for
BO08232.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab5-RG | 285..941 | 17..675 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:33 Download gff for
BO08232.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab5-RF | 216..877 | 13..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:50:51 Download gff for
BO08232.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab5-RG | 285..941 | 17..675 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:50:51 Download gff for
BO08232.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2361160..2361428 | 17..285 | 100 | | Minus |
2L | 2360633..2360801 | 407..575 | 100 | <- | Minus |
2L | 2360972..2361092 | 286..406 | 100 | <- | Minus |
2L | 2360469..2360569 | 576..675 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:49:49 Download gff for
BO08232.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2360633..2360801 | 407..575 | 100 | <- | Minus |
arm_2L | 2360972..2361092 | 286..406 | 100 | <- | Minus |
arm_2L | 2361160..2361428 | 17..285 | 100 | | Minus |
arm_2L | 2360469..2360569 | 576..675 | 98 | <- | Minus |
BO08232.pep Sequence
Translation from 16 to 691
> BO08232.pep
MATTPRSGGASGTGTAQRPNGTSQNKSCQFKLVLLGESAVGKSSLVLRFV
KGQFHEYQESTIGAAFLTQTICIEDTVVKFEIWDTAGQERYHSLAPMYYR
GAQAAIVVYDIQNQDSFQRAKTWVKELHKQASPNIVIALAGNKADLSNIR
VVEFDEAKQYAEENGLLFMETSAKTGMNVNDIFLAIAKKLPKNDGANNQG
TSIRPTGTETNRPTNNCCKASFLDH
BO08232.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab5-PI | 219 | CG3664-PI | 1..219 | 1..219 | 1132 | 100 | Plus |
Rab5-PH | 219 | CG3664-PH | 1..219 | 1..219 | 1132 | 100 | Plus |
Rab5-PG | 219 | CG3664-PG | 1..219 | 1..219 | 1132 | 100 | Plus |
Rab5-PE | 219 | CG3664-PE | 1..219 | 1..219 | 1132 | 100 | Plus |
Rab5-PC | 219 | CG3664-PC | 1..219 | 1..219 | 1132 | 100 | Plus |