Clone Sequence Records
BO08233.3prime Sequence
955 bp (819 high quality bases) assembled on 2006-01-06
> BO08233.3prime
ATGGTCTAGAAAGCTTGCCACCGCCTCCTCGGCCCCCTGAGTTTCCGCCT
GCTCAGTTTCCTGCCCATCCTCGTCGGCCACCTCCTTTACCACCTCCATT
TGTTCCTCCTGGGTTCCTACCGCCTTCTTTTCATTGTCCTCCTTAGCCAT
TGCCTGTTTCTCCAACTGCGTTTGCGATGCTGACGATGTGTCCTGCTTTA
AGAGTTCTCGCAAAAACATGGTGGCATAGGCAGCCGTGGGCAGCGAGAAC
TCCAGCAGGAGTGCCATGTAATTGGCCTCAGCTTCAGCTGGTTCTGGTGC
AACCGGAATGTTCTTCAATAGCTCCCAGTCGGAGGCGATAAGTGTATCCT
CCGGCGTATTGTACATTCTAAAGCTCCACTTGAGATCACTGGACGATATG
ATCATCTTGCGGTAGGCGCCAGCCAATGCGTATGTCTTCTCCTTGTGCTT
CAGTTGATCCGAGGAAAGACCCACTTCGGCGAGCATTTCCTCGTACCACG
CGCCGCACTCGTTGCTGGGATAGGTGATGTCGTGTCCAGGCAGGGGAAGG
ACCACATCGCAAAGTTTGTACTTGCCGCTAGCGATGTCTTCTGCTGTGAG
CGGGCGAACCTTTCGCTTGAAAATCGACTCCTCTTCGATGGCTTCATCCC
CTTCGGGGACTTCCAGAGGTTCATCGTTAGGCTCCTCTTCTTTTTGCTCT
TCCAAGGCCTCGCCCTGCTGCGCCTGCTCTTCCGAGGCTTCCGACTGATC
CTGCTCCACATAAACCAAATCCCCGGGTATCAATTTCAAGCCGAACTCCT
TAATTCGTCTAGACGCTATCCTGGTGAAGATCAGGCTTTGGTAAGCATGT
GGATATAGCATGAGCATGTTGCGTGGTATCTGCCGCAGAGCTGATGAGTA
ATCTGATTTCACAAATCTGGNCAAGCCGTCCAGCAGCTTCTTTTCGATGA
ACTTT
BO08233.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6745-PA | 2205 | CG6745-RA | 1313..2202 | 908..19 | 4425 | 99.8 | Minus |
CG6745-PA | 2205 | CG6745-RA | 1266..1309 | 955..912 | 201 | 97.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:40:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6745-RA | 2770 | CG6745-RA | 1348..2284 | 955..19 | 4614 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:40:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8511585..8512521 | 955..19 | 4614 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:40:32 has no hits.
BO08233.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:42 Download gff for
BO08233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6745-PA | 1266..2205 | 18..955 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:33:39 Download gff for
BO08233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6745-PA | 1266..2205 | 18..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:39:26 Download gff for
BO08233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6745-RA | 1348..2289 | 13..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:14:39 Download gff for
BO08233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6745-RA | 1348..2289 | 13..955 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:14:39 Download gff for
BO08233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8511585..8512526 | 13..955 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:39:26 Download gff for
BO08233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8504685..8505626 | 13..955 | 99 | | Minus |
BO08233.5prime Sequence
858 bp (810 high quality bases) assembled on 2006-01-06
> BO08233.5prime
GAAGTTATCAGTCGACATGGGCAAGGATCGGGGCAGAGGACGTAGGAATA
ACCATTCCGGGCCATACAACAAGAGCAACTGGCGTGGTCAGAAGAAGGAT
CGCCCCCAAAACAATGGTGGCGGTCAGCGCAACAGTGCTCCACAACAGAA
ATCCACGCTGCTGGAGACCCAAGTGGGCATTACGGAGTTCACTAACCCGG
AGGCACCTGGCTTCACGGGAATACTTAAGTCTCGCTTCTCTGATTTTCAC
GTGAACGAGATTGATAGCAATGGAAAGGTTCTGGAACTGAACGATCTCAG
TGTGCCTAAAGTGGCTATTGTGGCTGTGGCCGAAAACGAACTGGACAACT
GGCGGAAAGAACTGGAGGCAGTAATCGGCCCGGAAGTTTGGCAGGATATA
GCCAATCTGGCTAAGGCCAAAAACGATCCCGCGATCGAGCAAAAGGTGGA
GATTGATGTGACCACTCTGGATAAGGAGCAGCGAACACAAGTCCACCAGA
TGATAAAACAGCTTTACAAGGGCAAGCTACTGTCCACAACCATTGGACAG
CAGCAGGCTAAGCCGAAGGTCCAGGAGGAGGCATCTTTGGAAAATAAGGA
TGCGGCTGAAGGTGAAACCTCAACCCAGAAAGACTCACAGGTGCCGGCAG
AGGAGAAGAAGACTATAAAAGTATTTAAACCAAAGCCAGGACGCGGTGAC
AAACGCTGGAGCTTTCCGGCGGATTACGTGACCTTCCTGGTGCACAAAAC
CAATTTGGTTACCAGCGATGTGGCCTCTACTTTAGCAGCGCGACTGAACT
TACGACCATCGCAGGTGAACTACAGCGGCATCAAGGACAAGCGGGCCAAA
ACCACCCA
BO08233.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6745-PA | 2205 | CG6745-RA | 1..842 | 17..858 | 4210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:17:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6745-RA | 2770 | CG6745-RA | 83..924 | 17..858 | 4210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:17:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8510512..8510886 | 323..697 | 1875 | 100 | Plus |
3L | 28110227 | 3L | 8510258..8510451 | 130..323 | 955 | 99.5 | Plus |
3L | 28110227 | 3L | 8510085..8510203 | 17..135 | 595 | 100 | Plus |
3L | 28110227 | 3L | 8510939..8511042 | 695..798 | 520 | 100 | Plus |
3L | 28110227 | 3L | 8511102..8511161 | 799..858 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:17:20 has no hits.
BO08233.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:43 Download gff for
BO08233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6745-PA | 1..841 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:33:40 Download gff for
BO08233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6745-PA | 1..841 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:58:26 Download gff for
BO08233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6745-RA | 83..923 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:10:08 Download gff for
BO08233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6745-RA | 83..923 | 17..857 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:10:08 Download gff for
BO08233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8510085..8510203 | 17..135 | 100 | -> | Plus |
3L | 8510264..8510451 | 136..323 | 100 | -> | Plus |
3L | 8510513..8510884 | 324..695 | 100 | -> | Plus |
3L | 8510940..8511042 | 696..798 | 100 | -> | Plus |
3L | 8511102..8511160 | 799..857 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:58:26 Download gff for
BO08233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8503185..8503303 | 17..135 | 100 | -> | Plus |
arm_3L | 8504040..8504142 | 696..798 | 100 | -> | Plus |
arm_3L | 8503364..8503551 | 136..323 | 100 | -> | Plus |
arm_3L | 8503613..8503984 | 324..695 | 100 | -> | Plus |
arm_3L | 8504202..8504260 | 799..857 | 100 | | Plus |
BO08233.complete Sequence
2236 bp (2236 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631110
> BO08233.complete
GAAGTTATCAGTCGACATGGGCAAGGATCGGGGCAGAGGACGTAGGAATA
ACCATTCCGGGCCATACAACAAGAGCAACTGGCGTGGTCAGAAGAAGGAT
CGCCCCCAAAACAATGGTGGCGGTCAGCGCAACAGTGCTCCACAACAGAA
ATCCACGCTGCTGGAGACCCAAGTGGGCATTACGGAGTTCACTAACCCGG
AGGCACCTGGCTTCACGGGAATACTTAAGTCTCGCTTCTCTGATTTTCAC
GTGAACGAGATTGATAGCAATGGAAAGGTTCTGGAACTGAACGATCTCAG
TGTGCCTAAAGTGGCTATTGTGGCTGTGGCCGAAAACGAACTGGACAACT
GGCGGAAAGAACTGGAGGCAGTAATCGGCCCGGAAGTTTGGCAGGATATA
GCCAATCTGGCTAAGGCCAAAAACGATCCCGCGATCGAGCAAAAGGTGGA
GATTGATGTGACCACTCTGGATAAGGAGCAGCGAACACAAGTCCACCAGA
TGATAAAACAGCTTTACAAGGGCAAGCTACTGTCCACAACCATTGGACAG
CAGCAGGCTAAGCCGAAGGTCCAGGAGGAGGCATCTTTGGAAAATAAGGA
TGCGGCTGAAGGTGAAACCTCAACCCAGAAAGACTCACAGGTGCCGGCAG
AGGAGAAGAAGACTATAAAAGTATTTAAACCAAAGCCAGGACGCGGTGAC
AAACGCTGGAGCTTTCCGGCGGATTACGTGACCTTCCTGGTGCACAAAAC
CAATTTGGTTACCAGCGATGTGGCCTCTACTTTAGCAGCGCGACTGAACT
TACGACCATCGCAGGTGAACTACAGCGGCATCAAGGACAAGCGGGCCAAA
ACCACCCAGAAGTTCTCCGTCAAGCGTCGTACACCAGAGAGCATTTTGGT
TGCAGCTCGCTCCCAACGGAATGTTCATATCGGCAACTTTGGATTCGAAT
CCAATACACTGAAGCTAGGCGATTTGCAGGGCAATCGTTTTCGTATTGCC
TTGCGACACATTGCCAAGGAGAAGCGAGAAGAAATCGAGCAGGCACTGCA
ATCATTGAAGGAACGCGGCTTCATCAACTACTATGGCTTGCAGCGGTTCG
GCAACAGCGCCAGTGTCCCAACCTATGAGGTGGGTGTTGCTCTGCTCAAG
CACGATTACAAACTGGCCTGCGAACTGATCCTGAAACCCCGGGACTCGGA
TGTGGAGTTTTTGCGTCCCATACGCGAGGAGTGGTGGAAAAATCGCGACT
CCGCGGCGGCAGCTGCACAGATCTACGGCGAAAAGTTCATCGAAAAGAAG
CTGCTGGACGGCTTGGCCAGATTTGGTGAATCAGATTACTCATCAGCTCT
GCGGCAGATACCACGCAACATGCTCATGCTATATCCACATGCTTACCAAA
GCCTGATCTTCAACAGGATAGCGTCTAGACGAATTAAGGAGTTCGGCTTG
AAATTGATACCCGGGGATTTGGTTTATGTGGAGCAGGATCAGTCGGAAGC
CTCGGAAGAGCAGGCGCAGCAGGGCGAGGCCTTGGAAGAGCAAAAAGAAG
AGGAGCCTAACGATGAACCTCTGGAAGTCCCCGAAGGGGATGAAGCCATC
GAAGAGGAGTCGATTTTCAAGCGAAAGGTTCGCCCGCTCACAGCAGAAGA
CATCGCTAGCGGCAAGTACAAACTTTGCGATGTGGTCCTTCCCCTGCCTG
GACACGACATCACCTATCCCAGCAACGAGTGCGGCGCGTGGTACGAGGAA
ATGCTCGCCGAAGTGGGTCTTTCCTCGGATCAACTGAAGCACAAGGAGAA
GACATACGCATTGGCTGGCGCCTACCGCAAGATGATCATATCGTCCAGTG
ATCTCAAGTGGAGCTTTAGAATGTACAATACGCCGGAGGATACACTTATC
GCCTCCGACTGGGAGCTATTGAAGAACATTCCGGTTGCACCAGAACCAGC
TGAAGCTGAGGCCAATTACATGGCACTCCTGCTGGAGTTCTCGCTGCCCA
CGGCTGCCTATGCCACCATGTTTTTGCGAGAACTCTTAAAGCAGGACACA
TCGTCAGCATCGCAAACGCAGTTGGAGAAACAGGCAATGGCTAAGGAGGA
CAATGAAAAGAAGGCGGTAGGAACCCAGGAGGAACAAATGGAGGTGGTAA
AGGAGGTGGCCGACGAGGATGGGCAGGAAACTGAGCAGGCGGAAACTCAG
GGGGCCGAGGAGGCGGTGGCAAGCTTTCTAGACCAT
BO08233.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:07:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6745-RA | 2205 | CG6745-PA | 1..2202 | 17..2218 | 11010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6745-RA | 2770 | CG6745-RA | 83..2284 | 17..2218 | 11010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8511102..8512521 | 799..2218 | 7100 | 100 | Plus |
3L | 28110227 | 3L | 8510512..8510886 | 323..697 | 1875 | 100 | Plus |
3L | 28110227 | 3L | 8510258..8510451 | 130..323 | 955 | 99.5 | Plus |
3L | 28110227 | 3L | 8510085..8510203 | 17..135 | 595 | 100 | Plus |
3L | 28110227 | 3L | 8510939..8511042 | 695..798 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:07:27 has no hits.
BO08233.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:00:52 Download gff for
BO08233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6745-RA | 1..2205 | 17..2219 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:19:17 Download gff for
BO08233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6745-RA | 48..2254 | 17..2224 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:31 Download gff for
BO08233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6745-RA | 83..2284 | 17..2220 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:00:52 Download gff for
BO08233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6745-RA | 48..2254 | 17..2224 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:14 Download gff for
BO08233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6745-RA | 83..2284 | 17..2220 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:11:14 Download gff for
BO08233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8510085..8510203 | 17..135 | 100 | -> | Plus |
3L | 8510264..8510451 | 136..323 | 100 | -> | Plus |
3L | 8510513..8510884 | 324..695 | 100 | -> | Plus |
3L | 8510940..8511042 | 696..798 | 100 | -> | Plus |
3L | 8511102..8512521 | 799..2220 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:31 Download gff for
BO08233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8503185..8503303 | 17..135 | 100 | -> | Plus |
arm_3L | 8503364..8503551 | 136..323 | 100 | -> | Plus |
arm_3L | 8503613..8503984 | 324..695 | 100 | -> | Plus |
arm_3L | 8504040..8504142 | 696..798 | 100 | -> | Plus |
arm_3L | 8504202..8505621 | 799..2220 | 99 | | Plus |
BO08233.pep Sequence
Translation from 16 to 2236
> BO08233.pep
MGKDRGRGRRNNHSGPYNKSNWRGQKKDRPQNNGGGQRNSAPQQKSTLLE
TQVGITEFTNPEAPGFTGILKSRFSDFHVNEIDSNGKVLELNDLSVPKVA
IVAVAENELDNWRKELEAVIGPEVWQDIANLAKAKNDPAIEQKVEIDVTT
LDKEQRTQVHQMIKQLYKGKLLSTTIGQQQAKPKVQEEASLENKDAAEGE
TSTQKDSQVPAEEKKTIKVFKPKPGRGDKRWSFPADYVTFLVHKTNLVTS
DVASTLAARLNLRPSQVNYSGIKDKRAKTTQKFSVKRRTPESILVAARSQ
RNVHIGNFGFESNTLKLGDLQGNRFRIALRHIAKEKREEIEQALQSLKER
GFINYYGLQRFGNSASVPTYEVGVALLKHDYKLACELILKPRDSDVEFLR
PIREEWWKNRDSAAAAAQIYGEKFIEKKLLDGLARFGESDYSSALRQIPR
NMLMLYPHAYQSLIFNRIASRRIKEFGLKLIPGDLVYVEQDQSEASEEQA
QQGEALEEQKEEEPNDEPLEVPEGDEAIEEESIFKRKVRPLTAEDIASGK
YKLCDVVLPLPGHDITYPSNECGAWYEEMLAEVGLSSDQLKHKEKTYALA
GAYRKMIISSSDLKWSFRMYNTPEDTLIASDWELLKNIPVAPEPAEAEAN
YMALLLEFSLPTAAYATMFLRELLKQDTSSASQTQLEKQAMAKEDNEKKA
VGTQEEQMEVVKEVADEDGQETEQAETQGAEEAVASFLDH
BO08233.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:45:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6745-PA | 734 | CG6745-PA | 1..734 | 1..734 | 3758 | 100 | Plus |