Clone BO08233 Report

Search the DGRC for BO08233

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:82
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptCG6745-RA
Protein status:BO08233.pep: validated full length
Sequenced Size:2236

Clone Sequence Records

BO08233.3prime Sequence

955 bp (819 high quality bases) assembled on 2006-01-06

> BO08233.3prime
ATGGTCTAGAAAGCTTGCCACCGCCTCCTCGGCCCCCTGAGTTTCCGCCT
GCTCAGTTTCCTGCCCATCCTCGTCGGCCACCTCCTTTACCACCTCCATT
TGTTCCTCCTGGGTTCCTACCGCCTTCTTTTCATTGTCCTCCTTAGCCAT
TGCCTGTTTCTCCAACTGCGTTTGCGATGCTGACGATGTGTCCTGCTTTA
AGAGTTCTCGCAAAAACATGGTGGCATAGGCAGCCGTGGGCAGCGAGAAC
TCCAGCAGGAGTGCCATGTAATTGGCCTCAGCTTCAGCTGGTTCTGGTGC
AACCGGAATGTTCTTCAATAGCTCCCAGTCGGAGGCGATAAGTGTATCCT
CCGGCGTATTGTACATTCTAAAGCTCCACTTGAGATCACTGGACGATATG
ATCATCTTGCGGTAGGCGCCAGCCAATGCGTATGTCTTCTCCTTGTGCTT
CAGTTGATCCGAGGAAAGACCCACTTCGGCGAGCATTTCCTCGTACCACG
CGCCGCACTCGTTGCTGGGATAGGTGATGTCGTGTCCAGGCAGGGGAAGG
ACCACATCGCAAAGTTTGTACTTGCCGCTAGCGATGTCTTCTGCTGTGAG
CGGGCGAACCTTTCGCTTGAAAATCGACTCCTCTTCGATGGCTTCATCCC
CTTCGGGGACTTCCAGAGGTTCATCGTTAGGCTCCTCTTCTTTTTGCTCT
TCCAAGGCCTCGCCCTGCTGCGCCTGCTCTTCCGAGGCTTCCGACTGATC
CTGCTCCACATAAACCAAATCCCCGGGTATCAATTTCAAGCCGAACTCCT
TAATTCGTCTAGACGCTATCCTGGTGAAGATCAGGCTTTGGTAAGCATGT
GGATATAGCATGAGCATGTTGCGTGGTATCTGCCGCAGAGCTGATGAGTA
ATCTGATTTCACAAATCTGGNCAAGCCGTCCAGCAGCTTCTTTTCGATGA
ACTTT

BO08233.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG6745-PA 2205 CG6745-RA 1313..2202 908..19 4425 99.8 Minus
CG6745-PA 2205 CG6745-RA 1266..1309 955..912 201 97.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:40:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG6745-RA 2770 CG6745-RA 1348..2284 955..19 4614 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:40:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8511585..8512521 955..19 4614 99.5 Minus
Blast to na_te.dros performed on 2015-02-12 04:40:32 has no hits.

BO08233.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:42 Download gff for BO08233.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6745-PA 1266..2205 18..955 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:33:39 Download gff for BO08233.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6745-PA 1266..2205 18..955 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:39:26 Download gff for BO08233.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6745-RA 1348..2289 13..955 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:14:39 Download gff for BO08233.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6745-RA 1348..2289 13..955 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:14:39 Download gff for BO08233.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8511585..8512526 13..955 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:39:26 Download gff for BO08233.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8504685..8505626 13..955 99   Minus

BO08233.5prime Sequence

858 bp (810 high quality bases) assembled on 2006-01-06

> BO08233.5prime
GAAGTTATCAGTCGACATGGGCAAGGATCGGGGCAGAGGACGTAGGAATA
ACCATTCCGGGCCATACAACAAGAGCAACTGGCGTGGTCAGAAGAAGGAT
CGCCCCCAAAACAATGGTGGCGGTCAGCGCAACAGTGCTCCACAACAGAA
ATCCACGCTGCTGGAGACCCAAGTGGGCATTACGGAGTTCACTAACCCGG
AGGCACCTGGCTTCACGGGAATACTTAAGTCTCGCTTCTCTGATTTTCAC
GTGAACGAGATTGATAGCAATGGAAAGGTTCTGGAACTGAACGATCTCAG
TGTGCCTAAAGTGGCTATTGTGGCTGTGGCCGAAAACGAACTGGACAACT
GGCGGAAAGAACTGGAGGCAGTAATCGGCCCGGAAGTTTGGCAGGATATA
GCCAATCTGGCTAAGGCCAAAAACGATCCCGCGATCGAGCAAAAGGTGGA
GATTGATGTGACCACTCTGGATAAGGAGCAGCGAACACAAGTCCACCAGA
TGATAAAACAGCTTTACAAGGGCAAGCTACTGTCCACAACCATTGGACAG
CAGCAGGCTAAGCCGAAGGTCCAGGAGGAGGCATCTTTGGAAAATAAGGA
TGCGGCTGAAGGTGAAACCTCAACCCAGAAAGACTCACAGGTGCCGGCAG
AGGAGAAGAAGACTATAAAAGTATTTAAACCAAAGCCAGGACGCGGTGAC
AAACGCTGGAGCTTTCCGGCGGATTACGTGACCTTCCTGGTGCACAAAAC
CAATTTGGTTACCAGCGATGTGGCCTCTACTTTAGCAGCGCGACTGAACT
TACGACCATCGCAGGTGAACTACAGCGGCATCAAGGACAAGCGGGCCAAA
ACCACCCA

BO08233.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG6745-PA 2205 CG6745-RA 1..842 17..858 4210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:17:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG6745-RA 2770 CG6745-RA 83..924 17..858 4210 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:17:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8510512..8510886 323..697 1875 100 Plus
3L 28110227 3L 8510258..8510451 130..323 955 99.5 Plus
3L 28110227 3L 8510085..8510203 17..135 595 100 Plus
3L 28110227 3L 8510939..8511042 695..798 520 100 Plus
3L 28110227 3L 8511102..8511161 799..858 300 100 Plus
Blast to na_te.dros performed on 2015-02-11 04:17:20 has no hits.

BO08233.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:43 Download gff for BO08233.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6745-PA 1..841 17..857 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:33:40 Download gff for BO08233.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6745-PA 1..841 17..857 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:58:26 Download gff for BO08233.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6745-RA 83..923 17..857 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:10:08 Download gff for BO08233.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6745-RA 83..923 17..857 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:10:08 Download gff for BO08233.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8510085..8510203 17..135 100 -> Plus
3L 8510264..8510451 136..323 100 -> Plus
3L 8510513..8510884 324..695 100 -> Plus
3L 8510940..8511042 696..798 100 -> Plus
3L 8511102..8511160 799..857 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:58:26 Download gff for BO08233.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8503185..8503303 17..135 100 -> Plus
arm_3L 8504040..8504142 696..798 100 -> Plus
arm_3L 8503364..8503551 136..323 100 -> Plus
arm_3L 8503613..8503984 324..695 100 -> Plus
arm_3L 8504202..8504260 799..857 100   Plus

BO08233.complete Sequence

2236 bp (2236 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631110

> BO08233.complete
GAAGTTATCAGTCGACATGGGCAAGGATCGGGGCAGAGGACGTAGGAATA
ACCATTCCGGGCCATACAACAAGAGCAACTGGCGTGGTCAGAAGAAGGAT
CGCCCCCAAAACAATGGTGGCGGTCAGCGCAACAGTGCTCCACAACAGAA
ATCCACGCTGCTGGAGACCCAAGTGGGCATTACGGAGTTCACTAACCCGG
AGGCACCTGGCTTCACGGGAATACTTAAGTCTCGCTTCTCTGATTTTCAC
GTGAACGAGATTGATAGCAATGGAAAGGTTCTGGAACTGAACGATCTCAG
TGTGCCTAAAGTGGCTATTGTGGCTGTGGCCGAAAACGAACTGGACAACT
GGCGGAAAGAACTGGAGGCAGTAATCGGCCCGGAAGTTTGGCAGGATATA
GCCAATCTGGCTAAGGCCAAAAACGATCCCGCGATCGAGCAAAAGGTGGA
GATTGATGTGACCACTCTGGATAAGGAGCAGCGAACACAAGTCCACCAGA
TGATAAAACAGCTTTACAAGGGCAAGCTACTGTCCACAACCATTGGACAG
CAGCAGGCTAAGCCGAAGGTCCAGGAGGAGGCATCTTTGGAAAATAAGGA
TGCGGCTGAAGGTGAAACCTCAACCCAGAAAGACTCACAGGTGCCGGCAG
AGGAGAAGAAGACTATAAAAGTATTTAAACCAAAGCCAGGACGCGGTGAC
AAACGCTGGAGCTTTCCGGCGGATTACGTGACCTTCCTGGTGCACAAAAC
CAATTTGGTTACCAGCGATGTGGCCTCTACTTTAGCAGCGCGACTGAACT
TACGACCATCGCAGGTGAACTACAGCGGCATCAAGGACAAGCGGGCCAAA
ACCACCCAGAAGTTCTCCGTCAAGCGTCGTACACCAGAGAGCATTTTGGT
TGCAGCTCGCTCCCAACGGAATGTTCATATCGGCAACTTTGGATTCGAAT
CCAATACACTGAAGCTAGGCGATTTGCAGGGCAATCGTTTTCGTATTGCC
TTGCGACACATTGCCAAGGAGAAGCGAGAAGAAATCGAGCAGGCACTGCA
ATCATTGAAGGAACGCGGCTTCATCAACTACTATGGCTTGCAGCGGTTCG
GCAACAGCGCCAGTGTCCCAACCTATGAGGTGGGTGTTGCTCTGCTCAAG
CACGATTACAAACTGGCCTGCGAACTGATCCTGAAACCCCGGGACTCGGA
TGTGGAGTTTTTGCGTCCCATACGCGAGGAGTGGTGGAAAAATCGCGACT
CCGCGGCGGCAGCTGCACAGATCTACGGCGAAAAGTTCATCGAAAAGAAG
CTGCTGGACGGCTTGGCCAGATTTGGTGAATCAGATTACTCATCAGCTCT
GCGGCAGATACCACGCAACATGCTCATGCTATATCCACATGCTTACCAAA
GCCTGATCTTCAACAGGATAGCGTCTAGACGAATTAAGGAGTTCGGCTTG
AAATTGATACCCGGGGATTTGGTTTATGTGGAGCAGGATCAGTCGGAAGC
CTCGGAAGAGCAGGCGCAGCAGGGCGAGGCCTTGGAAGAGCAAAAAGAAG
AGGAGCCTAACGATGAACCTCTGGAAGTCCCCGAAGGGGATGAAGCCATC
GAAGAGGAGTCGATTTTCAAGCGAAAGGTTCGCCCGCTCACAGCAGAAGA
CATCGCTAGCGGCAAGTACAAACTTTGCGATGTGGTCCTTCCCCTGCCTG
GACACGACATCACCTATCCCAGCAACGAGTGCGGCGCGTGGTACGAGGAA
ATGCTCGCCGAAGTGGGTCTTTCCTCGGATCAACTGAAGCACAAGGAGAA
GACATACGCATTGGCTGGCGCCTACCGCAAGATGATCATATCGTCCAGTG
ATCTCAAGTGGAGCTTTAGAATGTACAATACGCCGGAGGATACACTTATC
GCCTCCGACTGGGAGCTATTGAAGAACATTCCGGTTGCACCAGAACCAGC
TGAAGCTGAGGCCAATTACATGGCACTCCTGCTGGAGTTCTCGCTGCCCA
CGGCTGCCTATGCCACCATGTTTTTGCGAGAACTCTTAAAGCAGGACACA
TCGTCAGCATCGCAAACGCAGTTGGAGAAACAGGCAATGGCTAAGGAGGA
CAATGAAAAGAAGGCGGTAGGAACCCAGGAGGAACAAATGGAGGTGGTAA
AGGAGGTGGCCGACGAGGATGGGCAGGAAACTGAGCAGGCGGAAACTCAG
GGGGCCGAGGAGGCGGTGGCAAGCTTTCTAGACCAT

BO08233.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG6745-RA 2205 CG6745-PA 1..2202 17..2218 11010 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG6745-RA 2770 CG6745-RA 83..2284 17..2218 11010 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8511102..8512521 799..2218 7100 100 Plus
3L 28110227 3L 8510512..8510886 323..697 1875 100 Plus
3L 28110227 3L 8510258..8510451 130..323 955 99.5 Plus
3L 28110227 3L 8510085..8510203 17..135 595 100 Plus
3L 28110227 3L 8510939..8511042 695..798 520 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:07:27 has no hits.

BO08233.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:00:52 Download gff for BO08233.complete
Subject Subject Range Query Range Percent Splice Strand
CG6745-RA 1..2205 17..2219 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:19:17 Download gff for BO08233.complete
Subject Subject Range Query Range Percent Splice Strand
CG6745-RA 48..2254 17..2224 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:31 Download gff for BO08233.complete
Subject Subject Range Query Range Percent Splice Strand
CG6745-RA 83..2284 17..2220 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:00:52 Download gff for BO08233.complete
Subject Subject Range Query Range Percent Splice Strand
CG6745-RA 48..2254 17..2224 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:14 Download gff for BO08233.complete
Subject Subject Range Query Range Percent Splice Strand
CG6745-RA 83..2284 17..2220 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:11:14 Download gff for BO08233.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8510085..8510203 17..135 100 -> Plus
3L 8510264..8510451 136..323 100 -> Plus
3L 8510513..8510884 324..695 100 -> Plus
3L 8510940..8511042 696..798 100 -> Plus
3L 8511102..8512521 799..2220 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:31 Download gff for BO08233.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8503185..8503303 17..135 100 -> Plus
arm_3L 8503364..8503551 136..323 100 -> Plus
arm_3L 8503613..8503984 324..695 100 -> Plus
arm_3L 8504040..8504142 696..798 100 -> Plus
arm_3L 8504202..8505621 799..2220 99   Plus

BO08233.pep Sequence

Translation from 16 to 2236

> BO08233.pep
MGKDRGRGRRNNHSGPYNKSNWRGQKKDRPQNNGGGQRNSAPQQKSTLLE
TQVGITEFTNPEAPGFTGILKSRFSDFHVNEIDSNGKVLELNDLSVPKVA
IVAVAENELDNWRKELEAVIGPEVWQDIANLAKAKNDPAIEQKVEIDVTT
LDKEQRTQVHQMIKQLYKGKLLSTTIGQQQAKPKVQEEASLENKDAAEGE
TSTQKDSQVPAEEKKTIKVFKPKPGRGDKRWSFPADYVTFLVHKTNLVTS
DVASTLAARLNLRPSQVNYSGIKDKRAKTTQKFSVKRRTPESILVAARSQ
RNVHIGNFGFESNTLKLGDLQGNRFRIALRHIAKEKREEIEQALQSLKER
GFINYYGLQRFGNSASVPTYEVGVALLKHDYKLACELILKPRDSDVEFLR
PIREEWWKNRDSAAAAAQIYGEKFIEKKLLDGLARFGESDYSSALRQIPR
NMLMLYPHAYQSLIFNRIASRRIKEFGLKLIPGDLVYVEQDQSEASEEQA
QQGEALEEQKEEEPNDEPLEVPEGDEAIEEESIFKRKVRPLTAEDIASGK
YKLCDVVLPLPGHDITYPSNECGAWYEEMLAEVGLSSDQLKHKEKTYALA
GAYRKMIISSSDLKWSFRMYNTPEDTLIASDWELLKNIPVAPEPAEAEAN
YMALLLEFSLPTAAYATMFLRELLKQDTSSASQTQLEKQAMAKEDNEKKA
VGTQEEQMEVVKEVADEDGQETEQAETQGAEEAVASFLDH

BO08233.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:45:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG6745-PA 734 CG6745-PA 1..734 1..734 3758 100 Plus