Clone Sequence Records
BO08236.3prime Sequence
860 bp (855 high quality bases) assembled on 2006-01-06
> BO08236.3prime
ATGGTCTAGAAAGCTTGCGTTCAGCTTGGAGGAAAGCCCCTGGCTCATTA
GCAGCTTCACATCCTTTGGCTCCCGGCCACGTGTCTCTGGAAGGTAACGC
CAGGTGAGCAGAAGGCAGTAGATGCACACGCACATGCACGGGATGAAGGC
AAAGGAGCTCCAGACACTCTGCAGCAATGGAAAGCACATGCCCACTAGGA
AGTTTCCGATCCACGAGAAAAGGCTGCCCATTGACATGGCCACAGGACGA
GGCGAATCCTCGAGGAGCTCTGAGCCAATGAAGTAAGCAATTGGTCCCAG
ACCCAGCTGGAAACCGAGGATGAATGTTAGAATGAAGGCGGCACAGAAGT
AGGTGAGGACCGTGCTCTCTGATCTCTCCAAGAAGAAGAGCCCCAAGGAC
ATGGCAAGCAGGGCCAGAGCACACATGGAGCAGGAAATCATCATTAGAGG
TCGACGCGGAAACCTGCGGATTAGTAATGGTCCCAGAAGGGATGTGCACA
GATTGAAGCTTCCGATTCCCAGATTTAACCATGTGGCTGCTCCGTCAGAG
AAACCAGCATTAGTTAAAATAGAGAGCGAGTAGAAGAATATAGCATTGAT
GCCACTGAGTTGTTGGGTGGCCTGGAAGGAACAGACTAGCAGGAGTGGTA
GCCACAGCTCACTATTCCTTAAAACCGAGCACAAAGAACTTACTTCGGAG
CTGGACTTGGCCTCTAGAGTGGCCTTCATCTCAAGCAGTTCCTGATGCAC
CTCCTCCTCTGTGTTCCTTCCACGCAATCGGAGCAATGCTTTCTCACTGG
CGGCCGAATCTCGCTTGTGCAGGTAGAGCCACCGCGGACTCTCCGGAAAC
CACCAAAGAA
BO08236.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17975-PA | 1476 | sut2-RA | 632..1473 | 860..19 | 4210 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:01:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sut2-RA | 1608 | CG17975-RA | 676..1517 | 860..19 | 4210 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:01:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8088575..8088896 | 591..270 | 1610 | 100 | Minus |
2R | 25286936 | 2R | 8088247..8088515 | 860..592 | 1345 | 100 | Minus |
2R | 25286936 | 2R | 8088952..8089206 | 273..19 | 1275 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:01:41 has no hits.
BO08236.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:45 Download gff for
BO08236.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sut2-PA | 634..1476 | 15..858 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:33:44 Download gff for
BO08236.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17975-PA | 634..1476 | 15..858 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 16:00:05 Download gff for
BO08236.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sut2-RA | 676..1522 | 14..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:38:25 Download gff for
BO08236.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sut2-RA | 676..1522 | 14..860 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:38:25 Download gff for
BO08236.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8088956..8089211 | 14..269 | 99 | | Minus |
2R | 8088247..8088515 | 592..860 | 100 | -> | Minus |
2R | 8088575..8088896 | 270..591 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 16:00:05 Download gff for
BO08236.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3975752..3976020 | 592..860 | 100 | -> | Minus |
arm_2R | 3976080..3976401 | 270..591 | 100 | -> | Minus |
arm_2R | 3976461..3976716 | 14..269 | 99 | | Minus |
BO08236.5prime Sequence
919 bp (737 high quality bases) assembled on 2006-01-06
> BO08236.5prime
GAAGTTATCAGTCGACATGGTTGTTGTAATGCACGTGACTCCTCCAAAAG
TCAATGGATGGACCCCGCTTCTGATGCTCATCTGCCTGACCGTAACGCTG
GGCACCACCATTCCAGTGGGCTATTTCTTTGGGGTTCTCAATGCCCCGGC
CGAGATCATCAAGAAGTGGTGCCAGGACATATTGGCGAACGAATACGACA
CTATCGTCACTGCCGGTCAGCTTGATATTCTATGGACTAGCATTGTGTCC
ATCTACCTGATTGGAGGCATCTGCGGATCCTGCTTCAGCGCTGTGCTTTG
CGATAAATACGGCCGTAAGGGATGTCTGGTTATCAGTAGCGTACTATTCG
TCGTTTCCGGCATCCTGTTCACCTGGTGTCGAGCAGCCAAATCGCTGGAA
ATGCTGATGACTGGCCGCTTTCTAGGCGGCATCGCCTCCGCTTTGATCTT
CACAGCTCAGCCCATGTATCTACTGGAATCCGCTCCATCGGAGCTCAGTG
GGAGCGTCGGAGTGTTCACCTGCATCGGTGTGACTGGTGGTATCCTGCTC
GCCCAGGTGGCCACTTTATCCCACTTGCTGGGGAGCGAGCGACTGTGGCC
TTATGCCTTGAGTTTCTACTCGTTATTGGTGATGGCATCGTTGGTCCTTC
TTTGGTGGTTTCCGGAGAGTCCGCGGTGGCTCTACCTGCACAAGCGAGAT
TCGGCCGCCAGTGAGAAAGCATTGCTCCGATTGCGTGGAAGGAACACAGA
GGAGGAGGTGCATCAGGAACTGCTTGAGATGAAGGCCACTCTAGAGGCCA
AGTCCAGCTCCGAAGTAAGTTCTTTGTGCTCGGTTTTAAGGAATAGTGAG
CTGTGGCTACCACTCCTGCTAGTCTGTTCCTTCCAAGCCACCCAACAACT
CAGTGGCATCAATGCTATA
BO08236.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17975-PA | 1476 | sut2-RA | 1..903 | 17..919 | 4490 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:12:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sut2-RA | 1608 | CG17975-RA | 40..947 | 12..919 | 4510 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:12:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8087914..8088515 | 315..916 | 2995 | 99.8 | Plus |
2R | 25286936 | 2R | 8087574..8087858 | 31..315 | 1425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:12:44 has no hits.
BO08236.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:47 Download gff for
BO08236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sut2-PA | 1..902 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:33:46 Download gff for
BO08236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17975-PA | 1..902 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:47:59 Download gff for
BO08236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sut2-RA | 34..946 | 4..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:52:51 Download gff for
BO08236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sut2-RA | 34..946 | 4..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:52:51 Download gff for
BO08236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8087575..8087858 | 32..315 | 100 | -> | Plus |
2R | 8087915..8088517 | 316..918 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:47:59 Download gff for
BO08236.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3975080..3975363 | 32..315 | 100 | -> | Plus |
arm_2R | 3975420..3976022 | 316..918 | 99 | | Plus |
BO08236.complete Sequence
1507 bp (1507 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631111
> BO08236.complete
GAAGTTATCAGTCGACATGGTTGTTGTAATGCACGTGACTCCTCCAAAAG
TCAATGGATGGACCCCGCTTCTGATGCTCATCTGCCTGACCGTAACGCTG
GGCACCACCATTCCAGTGGGCTATTTCTTTGGGGTTCTCAATGCCCCGGC
CGAGATCATCAAGAAGTGGTGCCAGGACATATTGGCGAACGAATACGACA
CTATCGTCACTGCCGGTCAGCTTGATATTCTATGGACTAGCATTGTGTCC
ATCTACCTGATTGGAGGCATCTGCGGATCCTGCTTCAGCGCTGTGCTTTG
CGATAAATACGGCCGTAAGGGATGTCTGGTTATCAGTAGCGTACTATTCG
TCGTTTCCGGCATCCTGTTCACCTGGTGTCGAGCAGCCAAATCGCTGGAA
ATGCTGATGACTGGCCGCTTTCTAGGCGGCATCGCCTCCGCTTTGATCTT
CACAGCTCAGCCCATGTATCTACTGGAATCCGCTCCATCGGAGCTCAGTG
GGAGCGTCGGAGTGTTCACCTGCATCGGTGTGACTGGTGGTATCCTGCTC
GCCCAGGTGGCCACTTTATCCCACTTGCTGGGGAGCGAGCGACTGTGGCC
TTATGCCTTGAGTTTCTACTCGTTATTGGTGATGGCATCGTTGGTCCTTC
TTTGGTGGTTTCCGGAGAGTCCGCGGTGGCTCTACCTGCACAAGCGAGAT
TCGGCCGCCAGTGAGAAAGCATTGCTCCGATTGCGTGGAAGGAACACAGA
GGAGGAGGTGCATCAGGAACTGCTTGAGATGAAGGCCACTCTAGAGGCCA
AGTCCAGCTCCGAAGTAAGTTCTTTGTGCTCGGTTTTAAGGAATAGTGAG
CTGTGGCTACCACTCCTGCTAGTCTGTTCCTTCCAGGCCACCCAACAACT
CAGTGGCATCAATGCTATATTCTTCTACTCGCTCTCTATTTTAACTAATG
CTGGTTTCTCTGACGGAGCAGCCACATGGTTAAATCTGGGAATCGGAAGC
TTCAATCTGTGCACATCCCTTCTGGGACCATTACTAATCCGCAGGTTTCC
GCGTCGACCTCTAATGATGATTTCCTGCTCCATGTGTGCTCTGGCCCTGC
TTGCCATGTCCTTGGGGCTCTTCTTCTTGGAGAGATCAGAGAGCACGGTC
CTCACCTACTTCTGTGCCGCCTTCATTCTAACATTCATCCTCGGTTTCCA
GCTGGGTCTGGGACCAATTGCTTACTTCATTGGCTCAGAGCTCCTCGAGG
ATTCGCCTCGTCCTGTGGCCATGTCAATGGGCAGCCTTTTCTCGTGGATC
GGAAACTTCCTAGTGGGCATGTGCTTTCCATTGCTGCAGAGTGTCTGGAG
CTCCTTTGCCTTCATCCCGTGCATGTGCGTGTGCATCTACTGCCTTCTGC
TCACCTGGCGTTACCTTCCAGAGACACGTGGCCGGGAGCCAAAGGATGTG
AAGCTGCTAATGAGCCAGGGGCTTTCCTCCAAGCTGAACGCAAGCTTTCT
AGACCAT
BO08236.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:03:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sut2-RA | 1476 | CG17975-PA | 1..1473 | 17..1489 | 7365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:03:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sut2-RA | 1608 | CG17975-RA | 40..1517 | 12..1489 | 7375 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:03:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8087914..8088515 | 315..916 | 3010 | 100 | Plus |
2R | 25286936 | 2R | 8088575..8088896 | 917..1238 | 1610 | 100 | Plus |
2R | 25286936 | 2R | 8087574..8087858 | 31..315 | 1425 | 100 | Plus |
2R | 25286936 | 2R | 8088952..8089206 | 1235..1489 | 1275 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:03:45 has no hits.
BO08236.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:04 Download gff for
BO08236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sut2-RA | 1..1476 | 17..1493 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:31:45 Download gff for
BO08236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sut2-RA | 14..1502 | 4..1494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:45:25 Download gff for
BO08236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sut2-RA | 45..1517 | 17..1491 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:04 Download gff for
BO08236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sut2-RA | 14..1502 | 4..1494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:50:04 Download gff for
BO08236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sut2-RA | 45..1517 | 17..1491 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:50:04 Download gff for
BO08236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8087575..8087858 | 32..315 | 100 | -> | Plus |
2R | 8087915..8088515 | 316..916 | 100 | -> | Plus |
2R | 8088575..8088896 | 917..1238 | 100 | -> | Plus |
2R | 8088956..8089206 | 1239..1491 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:45:25 Download gff for
BO08236.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3975080..3975363 | 32..315 | 100 | -> | Plus |
arm_2R | 3975420..3976020 | 316..916 | 100 | -> | Plus |
arm_2R | 3976080..3976401 | 917..1238 | 100 | -> | Plus |
arm_2R | 3976461..3976711 | 1239..1491 | 99 | | Plus |
BO08236.pep Sequence
Translation from 16 to 1507
> BO08236.pep
MVVVMHVTPPKVNGWTPLLMLICLTVTLGTTIPVGYFFGVLNAPAEIIKK
WCQDILANEYDTIVTAGQLDILWTSIVSIYLIGGICGSCFSAVLCDKYGR
KGCLVISSVLFVVSGILFTWCRAAKSLEMLMTGRFLGGIASALIFTAQPM
YLLESAPSELSGSVGVFTCIGVTGGILLAQVATLSHLLGSERLWPYALSF
YSLLVMASLVLLWWFPESPRWLYLHKRDSAASEKALLRLRGRNTEEEVHQ
ELLEMKATLEAKSSSEVSSLCSVLRNSELWLPLLLVCSFQATQQLSGINA
IFFYSLSILTNAGFSDGAATWLNLGIGSFNLCTSLLGPLLIRRFPRRPLM
MISCSMCALALLAMSLGLFFLERSESTVLTYFCAAFILTFILGFQLGLGP
IAYFIGSELLEDSPRPVAMSMGSLFSWIGNFLVGMCFPLLQSVWSSFAFI
PCMCVCIYCLLLTWRYLPETRGREPKDVKLLMSQGLSSKLNASFLDH
BO08236.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:19:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sut2-PA | 491 | CG17975-PA | 1..491 | 1..491 | 2544 | 100 | Plus |
sut1-PA | 507 | CG8714-PA | 29..506 | 9..490 | 1175 | 46.9 | Plus |
sut3-PA | 476 | CG17976-PA | 7..475 | 14..490 | 1125 | 47.4 | Plus |
sut3-PB | 439 | CG17976-PB | 7..438 | 51..490 | 993 | 46.2 | Plus |
CG7882-PC | 516 | CG7882-PC | 36..508 | 15..490 | 968 | 40.7 | Plus |