Clone BO08236 Report

Search the DGRC for BO08236

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:82
Well:36
Vector:pDNR-Dual
Associated Gene/Transcriptsut2-RA
Protein status:BO08236.pep: validated full length
Sequenced Size:1507

Clone Sequence Records

BO08236.3prime Sequence

860 bp (855 high quality bases) assembled on 2006-01-06

> BO08236.3prime
ATGGTCTAGAAAGCTTGCGTTCAGCTTGGAGGAAAGCCCCTGGCTCATTA
GCAGCTTCACATCCTTTGGCTCCCGGCCACGTGTCTCTGGAAGGTAACGC
CAGGTGAGCAGAAGGCAGTAGATGCACACGCACATGCACGGGATGAAGGC
AAAGGAGCTCCAGACACTCTGCAGCAATGGAAAGCACATGCCCACTAGGA
AGTTTCCGATCCACGAGAAAAGGCTGCCCATTGACATGGCCACAGGACGA
GGCGAATCCTCGAGGAGCTCTGAGCCAATGAAGTAAGCAATTGGTCCCAG
ACCCAGCTGGAAACCGAGGATGAATGTTAGAATGAAGGCGGCACAGAAGT
AGGTGAGGACCGTGCTCTCTGATCTCTCCAAGAAGAAGAGCCCCAAGGAC
ATGGCAAGCAGGGCCAGAGCACACATGGAGCAGGAAATCATCATTAGAGG
TCGACGCGGAAACCTGCGGATTAGTAATGGTCCCAGAAGGGATGTGCACA
GATTGAAGCTTCCGATTCCCAGATTTAACCATGTGGCTGCTCCGTCAGAG
AAACCAGCATTAGTTAAAATAGAGAGCGAGTAGAAGAATATAGCATTGAT
GCCACTGAGTTGTTGGGTGGCCTGGAAGGAACAGACTAGCAGGAGTGGTA
GCCACAGCTCACTATTCCTTAAAACCGAGCACAAAGAACTTACTTCGGAG
CTGGACTTGGCCTCTAGAGTGGCCTTCATCTCAAGCAGTTCCTGATGCAC
CTCCTCCTCTGTGTTCCTTCCACGCAATCGGAGCAATGCTTTCTCACTGG
CGGCCGAATCTCGCTTGTGCAGGTAGAGCCACCGCGGACTCTCCGGAAAC
CACCAAAGAA

BO08236.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG17975-PA 1476 sut2-RA 632..1473 860..19 4210 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:01:42
Subject Length Description Subject Range Query Range Score Percent Strand
sut2-RA 1608 CG17975-RA 676..1517 860..19 4210 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:01:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8088575..8088896 591..270 1610 100 Minus
2R 25286936 2R 8088247..8088515 860..592 1345 100 Minus
2R 25286936 2R 8088952..8089206 273..19 1275 100 Minus
Blast to na_te.dros performed on 2015-02-13 16:01:41 has no hits.

BO08236.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:45 Download gff for BO08236.3prime
Subject Subject Range Query Range Percent Splice Strand
sut2-PA 634..1476 15..858 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:33:44 Download gff for BO08236.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17975-PA 634..1476 15..858 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 16:00:05 Download gff for BO08236.3prime
Subject Subject Range Query Range Percent Splice Strand
sut2-RA 676..1522 14..860 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:38:25 Download gff for BO08236.3prime
Subject Subject Range Query Range Percent Splice Strand
sut2-RA 676..1522 14..860 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:38:25 Download gff for BO08236.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8088956..8089211 14..269 99   Minus
2R 8088247..8088515 592..860 100 -> Minus
2R 8088575..8088896 270..591 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 16:00:05 Download gff for BO08236.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3975752..3976020 592..860 100 -> Minus
arm_2R 3976080..3976401 270..591 100 -> Minus
arm_2R 3976461..3976716 14..269 99   Minus

BO08236.5prime Sequence

919 bp (737 high quality bases) assembled on 2006-01-06

> BO08236.5prime
GAAGTTATCAGTCGACATGGTTGTTGTAATGCACGTGACTCCTCCAAAAG
TCAATGGATGGACCCCGCTTCTGATGCTCATCTGCCTGACCGTAACGCTG
GGCACCACCATTCCAGTGGGCTATTTCTTTGGGGTTCTCAATGCCCCGGC
CGAGATCATCAAGAAGTGGTGCCAGGACATATTGGCGAACGAATACGACA
CTATCGTCACTGCCGGTCAGCTTGATATTCTATGGACTAGCATTGTGTCC
ATCTACCTGATTGGAGGCATCTGCGGATCCTGCTTCAGCGCTGTGCTTTG
CGATAAATACGGCCGTAAGGGATGTCTGGTTATCAGTAGCGTACTATTCG
TCGTTTCCGGCATCCTGTTCACCTGGTGTCGAGCAGCCAAATCGCTGGAA
ATGCTGATGACTGGCCGCTTTCTAGGCGGCATCGCCTCCGCTTTGATCTT
CACAGCTCAGCCCATGTATCTACTGGAATCCGCTCCATCGGAGCTCAGTG
GGAGCGTCGGAGTGTTCACCTGCATCGGTGTGACTGGTGGTATCCTGCTC
GCCCAGGTGGCCACTTTATCCCACTTGCTGGGGAGCGAGCGACTGTGGCC
TTATGCCTTGAGTTTCTACTCGTTATTGGTGATGGCATCGTTGGTCCTTC
TTTGGTGGTTTCCGGAGAGTCCGCGGTGGCTCTACCTGCACAAGCGAGAT
TCGGCCGCCAGTGAGAAAGCATTGCTCCGATTGCGTGGAAGGAACACAGA
GGAGGAGGTGCATCAGGAACTGCTTGAGATGAAGGCCACTCTAGAGGCCA
AGTCCAGCTCCGAAGTAAGTTCTTTGTGCTCGGTTTTAAGGAATAGTGAG
CTGTGGCTACCACTCCTGCTAGTCTGTTCCTTCCAAGCCACCCAACAACT
CAGTGGCATCAATGCTATA

BO08236.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG17975-PA 1476 sut2-RA 1..903 17..919 4490 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:12:44
Subject Length Description Subject Range Query Range Score Percent Strand
sut2-RA 1608 CG17975-RA 40..947 12..919 4510 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:12:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8087914..8088515 315..916 2995 99.8 Plus
2R 25286936 2R 8087574..8087858 31..315 1425 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:12:44 has no hits.

BO08236.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:47 Download gff for BO08236.5prime
Subject Subject Range Query Range Percent Splice Strand
sut2-PA 1..902 17..918 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:33:46 Download gff for BO08236.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17975-PA 1..902 17..918 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:47:59 Download gff for BO08236.5prime
Subject Subject Range Query Range Percent Splice Strand
sut2-RA 34..946 4..918 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:52:51 Download gff for BO08236.5prime
Subject Subject Range Query Range Percent Splice Strand
sut2-RA 34..946 4..918 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:52:51 Download gff for BO08236.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8087575..8087858 32..315 100 -> Plus
2R 8087915..8088517 316..918 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:47:59 Download gff for BO08236.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3975080..3975363 32..315 100 -> Plus
arm_2R 3975420..3976022 316..918 99   Plus

BO08236.complete Sequence

1507 bp (1507 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ631111

> BO08236.complete
GAAGTTATCAGTCGACATGGTTGTTGTAATGCACGTGACTCCTCCAAAAG
TCAATGGATGGACCCCGCTTCTGATGCTCATCTGCCTGACCGTAACGCTG
GGCACCACCATTCCAGTGGGCTATTTCTTTGGGGTTCTCAATGCCCCGGC
CGAGATCATCAAGAAGTGGTGCCAGGACATATTGGCGAACGAATACGACA
CTATCGTCACTGCCGGTCAGCTTGATATTCTATGGACTAGCATTGTGTCC
ATCTACCTGATTGGAGGCATCTGCGGATCCTGCTTCAGCGCTGTGCTTTG
CGATAAATACGGCCGTAAGGGATGTCTGGTTATCAGTAGCGTACTATTCG
TCGTTTCCGGCATCCTGTTCACCTGGTGTCGAGCAGCCAAATCGCTGGAA
ATGCTGATGACTGGCCGCTTTCTAGGCGGCATCGCCTCCGCTTTGATCTT
CACAGCTCAGCCCATGTATCTACTGGAATCCGCTCCATCGGAGCTCAGTG
GGAGCGTCGGAGTGTTCACCTGCATCGGTGTGACTGGTGGTATCCTGCTC
GCCCAGGTGGCCACTTTATCCCACTTGCTGGGGAGCGAGCGACTGTGGCC
TTATGCCTTGAGTTTCTACTCGTTATTGGTGATGGCATCGTTGGTCCTTC
TTTGGTGGTTTCCGGAGAGTCCGCGGTGGCTCTACCTGCACAAGCGAGAT
TCGGCCGCCAGTGAGAAAGCATTGCTCCGATTGCGTGGAAGGAACACAGA
GGAGGAGGTGCATCAGGAACTGCTTGAGATGAAGGCCACTCTAGAGGCCA
AGTCCAGCTCCGAAGTAAGTTCTTTGTGCTCGGTTTTAAGGAATAGTGAG
CTGTGGCTACCACTCCTGCTAGTCTGTTCCTTCCAGGCCACCCAACAACT
CAGTGGCATCAATGCTATATTCTTCTACTCGCTCTCTATTTTAACTAATG
CTGGTTTCTCTGACGGAGCAGCCACATGGTTAAATCTGGGAATCGGAAGC
TTCAATCTGTGCACATCCCTTCTGGGACCATTACTAATCCGCAGGTTTCC
GCGTCGACCTCTAATGATGATTTCCTGCTCCATGTGTGCTCTGGCCCTGC
TTGCCATGTCCTTGGGGCTCTTCTTCTTGGAGAGATCAGAGAGCACGGTC
CTCACCTACTTCTGTGCCGCCTTCATTCTAACATTCATCCTCGGTTTCCA
GCTGGGTCTGGGACCAATTGCTTACTTCATTGGCTCAGAGCTCCTCGAGG
ATTCGCCTCGTCCTGTGGCCATGTCAATGGGCAGCCTTTTCTCGTGGATC
GGAAACTTCCTAGTGGGCATGTGCTTTCCATTGCTGCAGAGTGTCTGGAG
CTCCTTTGCCTTCATCCCGTGCATGTGCGTGTGCATCTACTGCCTTCTGC
TCACCTGGCGTTACCTTCCAGAGACACGTGGCCGGGAGCCAAAGGATGTG
AAGCTGCTAATGAGCCAGGGGCTTTCCTCCAAGCTGAACGCAAGCTTTCT
AGACCAT

BO08236.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:03:46
Subject Length Description Subject Range Query Range Score Percent Strand
sut2-RA 1476 CG17975-PA 1..1473 17..1489 7365 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:03:47
Subject Length Description Subject Range Query Range Score Percent Strand
sut2-RA 1608 CG17975-RA 40..1517 12..1489 7375 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:03:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8087914..8088515 315..916 3010 100 Plus
2R 25286936 2R 8088575..8088896 917..1238 1610 100 Plus
2R 25286936 2R 8087574..8087858 31..315 1425 100 Plus
2R 25286936 2R 8088952..8089206 1235..1489 1275 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:03:45 has no hits.

BO08236.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:04 Download gff for BO08236.complete
Subject Subject Range Query Range Percent Splice Strand
sut2-RA 1..1476 17..1493 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:31:45 Download gff for BO08236.complete
Subject Subject Range Query Range Percent Splice Strand
sut2-RA 14..1502 4..1494 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:45:25 Download gff for BO08236.complete
Subject Subject Range Query Range Percent Splice Strand
sut2-RA 45..1517 17..1491 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:04 Download gff for BO08236.complete
Subject Subject Range Query Range Percent Splice Strand
sut2-RA 14..1502 4..1494 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:50:04 Download gff for BO08236.complete
Subject Subject Range Query Range Percent Splice Strand
sut2-RA 45..1517 17..1491 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:50:04 Download gff for BO08236.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8087575..8087858 32..315 100 -> Plus
2R 8087915..8088515 316..916 100 -> Plus
2R 8088575..8088896 917..1238 100 -> Plus
2R 8088956..8089206 1239..1491 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:45:25 Download gff for BO08236.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3975080..3975363 32..315 100 -> Plus
arm_2R 3975420..3976020 316..916 100 -> Plus
arm_2R 3976080..3976401 917..1238 100 -> Plus
arm_2R 3976461..3976711 1239..1491 99   Plus

BO08236.pep Sequence

Translation from 16 to 1507

> BO08236.pep
MVVVMHVTPPKVNGWTPLLMLICLTVTLGTTIPVGYFFGVLNAPAEIIKK
WCQDILANEYDTIVTAGQLDILWTSIVSIYLIGGICGSCFSAVLCDKYGR
KGCLVISSVLFVVSGILFTWCRAAKSLEMLMTGRFLGGIASALIFTAQPM
YLLESAPSELSGSVGVFTCIGVTGGILLAQVATLSHLLGSERLWPYALSF
YSLLVMASLVLLWWFPESPRWLYLHKRDSAASEKALLRLRGRNTEEEVHQ
ELLEMKATLEAKSSSEVSSLCSVLRNSELWLPLLLVCSFQATQQLSGINA
IFFYSLSILTNAGFSDGAATWLNLGIGSFNLCTSLLGPLLIRRFPRRPLM
MISCSMCALALLAMSLGLFFLERSESTVLTYFCAAFILTFILGFQLGLGP
IAYFIGSELLEDSPRPVAMSMGSLFSWIGNFLVGMCFPLLQSVWSSFAFI
PCMCVCIYCLLLTWRYLPETRGREPKDVKLLMSQGLSSKLNASFLDH

BO08236.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:19:40
Subject Length Description Subject Range Query Range Score Percent Strand
sut2-PA 491 CG17975-PA 1..491 1..491 2544 100 Plus
sut1-PA 507 CG8714-PA 29..506 9..490 1175 46.9 Plus
sut3-PA 476 CG17976-PA 7..475 14..490 1125 47.4 Plus
sut3-PB 439 CG17976-PB 7..438 51..490 993 46.2 Plus
CG7882-PC 516 CG7882-PC 36..508 15..490 968 40.7 Plus