Clone Sequence Records
BO08238.3prime Sequence
872 bp (827 high quality bases) assembled on 2006-01-06
> BO08238.3prime
ATGGTCTAGAAAGCTTGCGAAAGTACGTGGCTGGGAGCCGAAACCAAGCC
CCACGCCACGCATCGTGTGTGTGGCGGCTCGCGCCATCTCGTACTGCTGC
TCCATGTTGGAGAACATGCGCTGGCGCTGCTGCACGTCCGTGGGCACTTT
CGTTCCGCCAGCGGCTCCCGATGGCGCAGCACCTCTTACTGCGCGGTTTC
CCTCGCCTGCTGCACTTCCATTGGTGGACTCCGCCTGGCCGCCCTTGCCA
TCGTCATTGCCGGACGTACCAGCGTTCTTGATACCCATGAGCCGCATAAA
CTTGGAGGCCACCTTGCCGTCGGAGTCCTGGGAGAAGTGCGCGTTGCCCC
ACTTGTTCGCCGAGTTCTCGCTCTTCTTGGAGCCCCACAGTAGCTTGCGC
TTCTGCTGCTGCTCCGCATAGCGATTGGCATTGATGATGCTCGGATTGTA
GTAACTGGGCAGCTGGATGGGTTCTGCGACTGGTGCTGCTGCCGCTGGTG
TGCTCAGCTCCAAGGACATCAGCGAGGGTATCTTGGGCGCATAGTTGGGC
GTGGGCAGGAGACCGCCGCCACCGCCGCCGGATGAACCGGCTGCCATGGC
TGCGGCTGTTGCATTGGCAGCTACCAGAGCGGCCGCTGCAACCCTCGCCG
CTGCTGTTGCATTAGTTGCCGTTGATCCTGCTCCGCCGCCTGATTTAGCG
AGCAGCATATGAGATCCGGCCACAGCTCCACCGCGAAGTGTTGTGGCTTG
TTCTTCCTTCGGAGATCTGGAGCGGCTGCTGGAGTCGCGTTCGCGATATT
TGCGTGACTGTTGCGACTGATGGCGGCGACGAGAGGGCGGCGTGCCCGTT
GGTGTGCGGGAACGGGATCGAG
BO08238.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6340-PB | 1542 | CG6340-RB | 686..1539 | 872..19 | 4245 | 99.8 | Minus |
CG6340-PD | 1281 | CG6340-RD | 425..1278 | 872..19 | 4245 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:17:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6340-RF | 2177 | CG6340-RF | 1150..2003 | 872..19 | 4255 | 99.9 | Minus |
CG6340-RE | 1831 | CG6340-RE | 804..1657 | 872..19 | 4255 | 99.9 | Minus |
CG6340-RB | 1814 | CG6340-RB | 787..1640 | 872..19 | 4255 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:17:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15485585..15486438 | 872..19 | 4255 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:17:37 has no hits.
BO08238.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:47 Download gff for
BO08238.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6340-PB | 686..1542 | 18..872 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:33:47 Download gff for
BO08238.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6340-PD | 425..1281 | 18..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:58:28 Download gff for
BO08238.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6340-RB | 787..1640 | 19..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:11:16 Download gff for
BO08238.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6340-RB | 787..1640 | 19..872 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:11:16 Download gff for
BO08238.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15485585..15486438 | 19..872 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:58:28 Download gff for
BO08238.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15379618..15380471 | 19..872 | 99 | | Minus |
BO08238.5prime Sequence
880 bp (770 high quality bases) assembled on 2006-01-06
> BO08238.5prime
GAAGTTATCAGTCGACATGGAGGCCCTAGTGAATTATAGTAGTGAGGACG
ACCAGGAGGATGCTGGCTTTCAGATACGGGCACCACAACAACAACAACAA
CTGCGGCATTTGCCGCATGCTAAATCCCCGAAAACAACAACTGATAGCTT
ATTAAAGCAGAAGAACAACAATAACTATGGCAGCGGCAACAGTCCGCGCG
GCAAGGAACGAGAAAGAGAGCGCGAGCGGGAGAGAGAGAAGACAAAGCCG
ATGTCGCAGCAGCAGAGTCATAGGAGCAGCAGCAGAGGACGCATTGATGA
GGAGCCGAAGCCCAGCAGTCGCCACCGCCAGGAGCGGGACAAGGACAGGG
AACGGGACCGCGACCGCGAACGTGACAGGGACAAGGACAAGAAGCGCAGC
GATTCAGAACGCAGTCGCGACAAAGGACGCGACAAGAATCACAGCAAGGG
CGACCATCGCCACCATCGTACCAAAGACGGCGACAGCCACAGAGAGCGGG
AGCGGGATCGTGACCGGGAGAGGGAGCGAGATCGCGACAAGGATCGGGAC
CGTAGGCGTTCGGAGAAGAGCAGTCGCCACCACAGTGGCAAGGAACGCCA
TCATCATCATCACAACAACTCATCGTCAGCCGCCGCTGCAGCGGTCAGTG
CAGCATCAGTCCGTCGATCCCATGATGAACGCAGTCGTCGTCGCCGGGAC
TCTCGATCCGGTTCCCGCACACCAACGGGCACGCCGCCCTCTCGTCGCCG
CCATCAGTCGCAACAGTCACGCAAATATCGCGAACGCGACTCCAGCAGCC
GCTCCAGATCTCCGAAGGAAGAACAAGCCACACACTTCGCGGTGGAGCTG
TGGCCGGATCTCATATGCTGCTCGCTAAAT
BO08238.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6340-PB | 1542 | CG6340-RB | 1..816 | 17..832 | 4080 | 100 | Plus |
CG6340-PD | 1281 | CG6340-RD | 23..555 | 300..832 | 2665 | 100 | Plus |
CG6340-PA | 540 | CG6340-RA | 1..286 | 17..302 | 1430 | 100 | Plus |
CG6340-PC | 324 | CG6340-RC | 1..285 | 17..301 | 1425 | 100 | Plus |
CG6340-PB | 1542 | CG6340-RB | 817..865 | 832..880 | 245 | 100 | Plus |
CG6340-PD | 1281 | CG6340-RD | 556..604 | 832..880 | 245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:40:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6340-RB | 1814 | CG6340-RB | 102..966 | 17..880 | 4300 | 99.9 | Plus |
CG6340-RE | 1831 | CG6340-RE | 102..983 | 17..880 | 4120 | 98 | Plus |
CG6340-RF | 2177 | CG6340-RF | 750..1329 | 302..880 | 2875 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:40:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15485330..15485764 | 447..880 | 2125 | 99.8 | Plus |
X | 23542271 | X | 15483198..15483421 | 79..302 | 1120 | 100 | Plus |
X | 23542271 | X | 15485120..15485269 | 300..449 | 750 | 100 | Plus |
X | 23542271 | X | 15482475..15482538 | 17..80 | 320 | 100 | Plus |
X | 23542271 | X | 15482855..15482974 | 94..213 | 305 | 87 | Plus |
Blast to na_te.dros performed 2015-02-12 04:40:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 715..865 | 131..285 | 124 | 58.6 | Plus |
BO08238.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:48 Download gff for
BO08238.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6340-PB | 1..865 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:33:49 Download gff for
BO08238.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6340-PB | 1..865 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:39:29 Download gff for
BO08238.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6340-RB | 96..966 | 9..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:15:14 Download gff for
BO08238.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6340-RB | 96..966 | 9..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:14 Download gff for
BO08238.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15482469..15482537 | 9..79 | 94 | -> | Plus |
X | 15483199..15483420 | 80..301 | 100 | -> | Plus |
X | 15485122..15485268 | 302..448 | 100 | -> | Plus |
X | 15485332..15485764 | 449..880 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:39:29 Download gff for
BO08238.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15376502..15376570 | 9..79 | 94 | -> | Plus |
arm_X | 15377232..15377453 | 80..301 | 100 | -> | Plus |
arm_X | 15379155..15379301 | 302..448 | 100 | -> | Plus |
arm_X | 15379365..15379797 | 449..880 | 99 | | Plus |
BO08238.complete Sequence
1573 bp (1573 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631112
> BO08238.complete
GAAGTTATCAGTCGACATGGAGGCCCTAGTGAATTATAGTAGTGAGGACG
ACCAGGAGGATGCTGGCTTTCAGATACGGGCACCACAACAACAACAACAA
CTGCGGCATTTGCCGCATGCTAAATCCCCGAAAACAACAACTGATAGCTT
ATTAAAGCAGAAGAACAACAATAACTATGGCAGCGGCAACAGTCCGCGCG
GCAAGGAACGAGAAAGAGAGCGCGAGCGGGAGAGAGAGAAGACAAAGCCG
ATGTCGCAGCAGCAGAGTCATAGGAGCAGCAGCAGAGGACGCATTGATGA
GGAGCCGAAGCCCAGCAGTCGCCACCGCCAGGAGCGGGACAAGGACAGGG
AACGGGACCGCGACCGCGAACGTGACAGGGACAAGGACAAGAAGCGCAGC
GATTCAGAACGCAGTCGCGACAAAGGACGCGACAAGAATCACAGCAAGGG
CGACCATCGCCACCATCGTACCAAAGACGGCGACAGCCACAGAGAGCGGG
AGCGGGATCGTGACCGGGAGAGGGAGCGAGATCGCGACAAGGATCGGGAC
CGTAGGCGTTCGGAGAAGAGCAGTCGCCACCACAGTGGCAAGGAACGCCA
TCATCATCATCACAACAACTCATCGTCAGCCGCCGCTGCAGCGGTCAGTG
CAGCATCAGTCCGTCGATCCCATGATGAACGCAGTCGTCGTCGCCGGGAC
TCTCGATCCGGTTCCCGCACACCAACGGGCACGCCGCCCTCTCGTCGCCG
CCATCAGTCGCAACAGTCACGCAAATATCGCGAACGCGACTCCAGCAGCC
GCTCCAGATCTCCGAAGGAAGAACAAGCCACAACACTTCGCGGTGGAGCT
GTGGCCGGATCTCATATGCTGCTCGCTAAATCAGGCGGCGGAGCAGGATC
AACGGCAACTAATGCAACAGCAGCGGCGAGGGTTGCAGCGGCCGCTCTGG
TAGCTGCCAATGCAACAGCCGCAGCCATGGCAGCCGGTTCATCCGGCGGC
GGTGGCGGCGGTCTCCTGCCCACGCCCAACTATGCGCCCAAGATACCCTC
GCTGATGTCCTTGGAGCTGAGCACACCAGCGGCAGCAGCACCAGTCGCAG
AACCCATCCAGCTGCCCAGTTACTACAATCCGAGCATCATCAATGCCAAT
CGCTATGCGGAGCAGCAGCAGAAGCGCAAGCTACTGTGGGGCTCCAAGAA
GAGCGAGAACTCGGCGAACAAGTGGGGCAACGCGCACTTCTCCCAGGACT
CCGACGGCAAGGTGGCCTCCAAGTTTATGCGGCTCATGGGTATCAAGAAC
GCTGGTACGTCCGGCAATGACGATGGCAAGGGCGGCCAGGCGGAGTCCAC
CAATGGAAGTGCAGCAGGCGAGGGAAACCGCGCAGTAAGAGGTGCTGCGC
CATCGGGAGCCGCTGGCGGAACGAAAGTGCCCACGGACGTGCAGCAGCGC
CAGCGCATGTTCTCCAACATGGAGCAGCAGTACGAGATGGCGCGAGCCGC
CACACACACGATGCGTGGCGTGGGGCTTGGTTTCGGCTCCCAGCCACGTA
CTTTCGCAAGCTTTCTAGACCAT
BO08238.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:15:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6340-RB | 1542 | CG6340-PB | 1..1539 | 17..1555 | 7695 | 100 | Plus |
CG6340-RA | 540 | CG6340-PA | 1..286 | 17..302 | 1430 | 100 | Plus |
CG6340-RF | 324 | CG6340-PF | 1..285 | 17..301 | 1425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6340-RB | 1814 | CG6340-RB | 102..1640 | 17..1555 | 7695 | 100 | Plus |
CG6340-RE | 1831 | CG6340-RE | 102..1657 | 17..1555 | 7490 | 98.9 | Plus |
CG6340-RF | 2177 | CG6340-RF | 750..2003 | 302..1555 | 6270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15485330..15486438 | 447..1555 | 5545 | 100 | Plus |
X | 23542271 | X | 15483198..15483421 | 79..302 | 1120 | 100 | Plus |
X | 23542271 | X | 15485120..15485269 | 300..449 | 750 | 100 | Plus |
X | 23542271 | X | 15482475..15482538 | 17..80 | 320 | 100 | Plus |
X | 23542271 | X | 15482855..15482974 | 94..213 | 305 | 87 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:15:04 has no hits.
BO08238.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:05 Download gff for
BO08238.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6340-RB | 1..1542 | 17..1556 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:31:47 Download gff for
BO08238.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6340-RB | 93..1637 | 9..1555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:30 Download gff for
BO08238.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6340-RB | 102..1640 | 17..1557 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:05 Download gff for
BO08238.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6340-RB | 93..1637 | 9..1555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:14:21 Download gff for
BO08238.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6340-RB | 102..1640 | 17..1557 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:14:21 Download gff for
BO08238.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15485122..15485268 | 302..448 | 100 | -> | Plus |
X | 15482475..15482537 | 17..79 | 100 | -> | Plus |
X | 15483199..15483420 | 80..301 | 100 | -> | Plus |
X | 15485332..15486438 | 449..1557 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:30 Download gff for
BO08238.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15376508..15376570 | 17..79 | 100 | -> | Plus |
arm_X | 15377232..15377453 | 80..301 | 100 | -> | Plus |
arm_X | 15379155..15379301 | 302..448 | 100 | -> | Plus |
arm_X | 15379365..15380471 | 449..1557 | 99 | | Plus |
BO08238.pep Sequence
Translation from 16 to 1573
> BO08238.pep
MEALVNYSSEDDQEDAGFQIRAPQQQQQLRHLPHAKSPKTTTDSLLKQKN
NNNYGSGNSPRGKEREREREREREKTKPMSQQQSHRSSSRGRIDEEPKPS
SRHRQERDKDRERDRDRERDRDKDKKRSDSERSRDKGRDKNHSKGDHRHH
RTKDGDSHRERERDRDRERERDRDKDRDRRRSEKSSRHHSGKERHHHHHN
NSSSAAAAAVSAASVRRSHDERSRRRRDSRSGSRTPTGTPPSRRRHQSQQ
SRKYRERDSSSRSRSPKEEQATTLRGGAVAGSHMLLAKSGGGAGSTATNA
TAAARVAAAALVAANATAAAMAAGSSGGGGGGLLPTPNYAPKIPSLMSLE
LSTPAAAAPVAEPIQLPSYYNPSIINANRYAEQQQKRKLLWGSKKSENSA
NKWGNAHFSQDSDGKVASKFMRLMGIKNAGTSGNDDGKGGQAESTNGSAA
GEGNRAVRGAAPSGAAGGTKVPTDVQQRQRMFSNMEQQYEMARAATHTMR
GVGLGFGSQPRTFASFLDH
BO08238.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:19:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6340-PB | 513 | CG6340-PB | 1..513 | 1..513 | 2652 | 100 | Plus |
CG6340-PF | 107 | CG6340-PF | 1..106 | 1..111 | 496 | 89.2 | Plus |
CG6340-PA | 179 | CG6340-PA | 1..95 | 1..95 | 492 | 100 | Plus |
CG7971-PG | 1062 | CG7971-PG | 393..656 | 23..273 | 246 | 25.7 | Plus |
CG7971-PA | 1062 | CG7971-PA | 393..656 | 23..273 | 246 | 25.7 | Plus |
CG7971-PG | 1062 | CG7971-PG | 432..673 | 47..267 | 224 | 25.6 | Plus |
CG7971-PG | 1062 | CG7971-PG | 441..691 | 9..273 | 218 | 25.9 | Plus |
CG7971-PG | 1062 | CG7971-PG | 279..544 | 11..275 | 207 | 26.7 | Plus |
CG7971-PG | 1062 | CG7971-PG | 350..575 | 21..270 | 192 | 24 | Plus |
CG7971-PG | 1062 | CG7971-PG | 195..456 | 3..275 | 176 | 24.8 | Plus |
CG7971-PG | 1062 | CG7971-PG | 239..515 | 22..270 | 174 | 24.8 | Plus |
CG7971-PG | 1062 | CG7971-PG | 497..782 | 8..275 | 157 | 25.4 | Plus |