Clone BO08238 Report

Search the DGRC for BO08238

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:82
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptCG6340-RB
Protein status:BO08238.pep: validated full length
Sequenced Size:1573

Clone Sequence Records

BO08238.3prime Sequence

872 bp (827 high quality bases) assembled on 2006-01-06

> BO08238.3prime
ATGGTCTAGAAAGCTTGCGAAAGTACGTGGCTGGGAGCCGAAACCAAGCC
CCACGCCACGCATCGTGTGTGTGGCGGCTCGCGCCATCTCGTACTGCTGC
TCCATGTTGGAGAACATGCGCTGGCGCTGCTGCACGTCCGTGGGCACTTT
CGTTCCGCCAGCGGCTCCCGATGGCGCAGCACCTCTTACTGCGCGGTTTC
CCTCGCCTGCTGCACTTCCATTGGTGGACTCCGCCTGGCCGCCCTTGCCA
TCGTCATTGCCGGACGTACCAGCGTTCTTGATACCCATGAGCCGCATAAA
CTTGGAGGCCACCTTGCCGTCGGAGTCCTGGGAGAAGTGCGCGTTGCCCC
ACTTGTTCGCCGAGTTCTCGCTCTTCTTGGAGCCCCACAGTAGCTTGCGC
TTCTGCTGCTGCTCCGCATAGCGATTGGCATTGATGATGCTCGGATTGTA
GTAACTGGGCAGCTGGATGGGTTCTGCGACTGGTGCTGCTGCCGCTGGTG
TGCTCAGCTCCAAGGACATCAGCGAGGGTATCTTGGGCGCATAGTTGGGC
GTGGGCAGGAGACCGCCGCCACCGCCGCCGGATGAACCGGCTGCCATGGC
TGCGGCTGTTGCATTGGCAGCTACCAGAGCGGCCGCTGCAACCCTCGCCG
CTGCTGTTGCATTAGTTGCCGTTGATCCTGCTCCGCCGCCTGATTTAGCG
AGCAGCATATGAGATCCGGCCACAGCTCCACCGCGAAGTGTTGTGGCTTG
TTCTTCCTTCGGAGATCTGGAGCGGCTGCTGGAGTCGCGTTCGCGATATT
TGCGTGACTGTTGCGACTGATGGCGGCGACGAGAGGGCGGCGTGCCCGTT
GGTGTGCGGGAACGGGATCGAG

BO08238.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG6340-PB 1542 CG6340-RB 686..1539 872..19 4245 99.8 Minus
CG6340-PD 1281 CG6340-RD 425..1278 872..19 4245 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:17:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG6340-RF 2177 CG6340-RF 1150..2003 872..19 4255 99.9 Minus
CG6340-RE 1831 CG6340-RE 804..1657 872..19 4255 99.9 Minus
CG6340-RB 1814 CG6340-RB 787..1640 872..19 4255 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:17:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15485585..15486438 872..19 4255 99.9 Minus
Blast to na_te.dros performed on 2015-02-11 04:17:37 has no hits.

BO08238.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:47 Download gff for BO08238.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6340-PB 686..1542 18..872 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:33:47 Download gff for BO08238.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6340-PD 425..1281 18..872 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:58:28 Download gff for BO08238.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6340-RB 787..1640 19..872 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:11:16 Download gff for BO08238.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6340-RB 787..1640 19..872 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:11:16 Download gff for BO08238.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15485585..15486438 19..872 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:58:28 Download gff for BO08238.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15379618..15380471 19..872 99   Minus

BO08238.5prime Sequence

880 bp (770 high quality bases) assembled on 2006-01-06

> BO08238.5prime
GAAGTTATCAGTCGACATGGAGGCCCTAGTGAATTATAGTAGTGAGGACG
ACCAGGAGGATGCTGGCTTTCAGATACGGGCACCACAACAACAACAACAA
CTGCGGCATTTGCCGCATGCTAAATCCCCGAAAACAACAACTGATAGCTT
ATTAAAGCAGAAGAACAACAATAACTATGGCAGCGGCAACAGTCCGCGCG
GCAAGGAACGAGAAAGAGAGCGCGAGCGGGAGAGAGAGAAGACAAAGCCG
ATGTCGCAGCAGCAGAGTCATAGGAGCAGCAGCAGAGGACGCATTGATGA
GGAGCCGAAGCCCAGCAGTCGCCACCGCCAGGAGCGGGACAAGGACAGGG
AACGGGACCGCGACCGCGAACGTGACAGGGACAAGGACAAGAAGCGCAGC
GATTCAGAACGCAGTCGCGACAAAGGACGCGACAAGAATCACAGCAAGGG
CGACCATCGCCACCATCGTACCAAAGACGGCGACAGCCACAGAGAGCGGG
AGCGGGATCGTGACCGGGAGAGGGAGCGAGATCGCGACAAGGATCGGGAC
CGTAGGCGTTCGGAGAAGAGCAGTCGCCACCACAGTGGCAAGGAACGCCA
TCATCATCATCACAACAACTCATCGTCAGCCGCCGCTGCAGCGGTCAGTG
CAGCATCAGTCCGTCGATCCCATGATGAACGCAGTCGTCGTCGCCGGGAC
TCTCGATCCGGTTCCCGCACACCAACGGGCACGCCGCCCTCTCGTCGCCG
CCATCAGTCGCAACAGTCACGCAAATATCGCGAACGCGACTCCAGCAGCC
GCTCCAGATCTCCGAAGGAAGAACAAGCCACACACTTCGCGGTGGAGCTG
TGGCCGGATCTCATATGCTGCTCGCTAAAT

BO08238.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG6340-PB 1542 CG6340-RB 1..816 17..832 4080 100 Plus
CG6340-PD 1281 CG6340-RD 23..555 300..832 2665 100 Plus
CG6340-PA 540 CG6340-RA 1..286 17..302 1430 100 Plus
CG6340-PC 324 CG6340-RC 1..285 17..301 1425 100 Plus
CG6340-PB 1542 CG6340-RB 817..865 832..880 245 100 Plus
CG6340-PD 1281 CG6340-RD 556..604 832..880 245 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:40:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG6340-RB 1814 CG6340-RB 102..966 17..880 4300 99.9 Plus
CG6340-RE 1831 CG6340-RE 102..983 17..880 4120 98 Plus
CG6340-RF 2177 CG6340-RF 750..1329 302..880 2875 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:40:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15485330..15485764 447..880 2125 99.8 Plus
X 23542271 X 15483198..15483421 79..302 1120 100 Plus
X 23542271 X 15485120..15485269 300..449 750 100 Plus
X 23542271 X 15482475..15482538 17..80 320 100 Plus
X 23542271 X 15482855..15482974 94..213 305 87 Plus
Blast to na_te.dros performed 2015-02-12 04:40:47
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 715..865 131..285 124 58.6 Plus

BO08238.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:48 Download gff for BO08238.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6340-PB 1..865 17..880 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:33:49 Download gff for BO08238.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6340-PB 1..865 17..880 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:39:29 Download gff for BO08238.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6340-RB 96..966 9..880 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:15:14 Download gff for BO08238.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6340-RB 96..966 9..880 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:14 Download gff for BO08238.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15482469..15482537 9..79 94 -> Plus
X 15483199..15483420 80..301 100 -> Plus
X 15485122..15485268 302..448 100 -> Plus
X 15485332..15485764 449..880 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:39:29 Download gff for BO08238.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15376502..15376570 9..79 94 -> Plus
arm_X 15377232..15377453 80..301 100 -> Plus
arm_X 15379155..15379301 302..448 100 -> Plus
arm_X 15379365..15379797 449..880 99   Plus

BO08238.complete Sequence

1573 bp (1573 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ631112

> BO08238.complete
GAAGTTATCAGTCGACATGGAGGCCCTAGTGAATTATAGTAGTGAGGACG
ACCAGGAGGATGCTGGCTTTCAGATACGGGCACCACAACAACAACAACAA
CTGCGGCATTTGCCGCATGCTAAATCCCCGAAAACAACAACTGATAGCTT
ATTAAAGCAGAAGAACAACAATAACTATGGCAGCGGCAACAGTCCGCGCG
GCAAGGAACGAGAAAGAGAGCGCGAGCGGGAGAGAGAGAAGACAAAGCCG
ATGTCGCAGCAGCAGAGTCATAGGAGCAGCAGCAGAGGACGCATTGATGA
GGAGCCGAAGCCCAGCAGTCGCCACCGCCAGGAGCGGGACAAGGACAGGG
AACGGGACCGCGACCGCGAACGTGACAGGGACAAGGACAAGAAGCGCAGC
GATTCAGAACGCAGTCGCGACAAAGGACGCGACAAGAATCACAGCAAGGG
CGACCATCGCCACCATCGTACCAAAGACGGCGACAGCCACAGAGAGCGGG
AGCGGGATCGTGACCGGGAGAGGGAGCGAGATCGCGACAAGGATCGGGAC
CGTAGGCGTTCGGAGAAGAGCAGTCGCCACCACAGTGGCAAGGAACGCCA
TCATCATCATCACAACAACTCATCGTCAGCCGCCGCTGCAGCGGTCAGTG
CAGCATCAGTCCGTCGATCCCATGATGAACGCAGTCGTCGTCGCCGGGAC
TCTCGATCCGGTTCCCGCACACCAACGGGCACGCCGCCCTCTCGTCGCCG
CCATCAGTCGCAACAGTCACGCAAATATCGCGAACGCGACTCCAGCAGCC
GCTCCAGATCTCCGAAGGAAGAACAAGCCACAACACTTCGCGGTGGAGCT
GTGGCCGGATCTCATATGCTGCTCGCTAAATCAGGCGGCGGAGCAGGATC
AACGGCAACTAATGCAACAGCAGCGGCGAGGGTTGCAGCGGCCGCTCTGG
TAGCTGCCAATGCAACAGCCGCAGCCATGGCAGCCGGTTCATCCGGCGGC
GGTGGCGGCGGTCTCCTGCCCACGCCCAACTATGCGCCCAAGATACCCTC
GCTGATGTCCTTGGAGCTGAGCACACCAGCGGCAGCAGCACCAGTCGCAG
AACCCATCCAGCTGCCCAGTTACTACAATCCGAGCATCATCAATGCCAAT
CGCTATGCGGAGCAGCAGCAGAAGCGCAAGCTACTGTGGGGCTCCAAGAA
GAGCGAGAACTCGGCGAACAAGTGGGGCAACGCGCACTTCTCCCAGGACT
CCGACGGCAAGGTGGCCTCCAAGTTTATGCGGCTCATGGGTATCAAGAAC
GCTGGTACGTCCGGCAATGACGATGGCAAGGGCGGCCAGGCGGAGTCCAC
CAATGGAAGTGCAGCAGGCGAGGGAAACCGCGCAGTAAGAGGTGCTGCGC
CATCGGGAGCCGCTGGCGGAACGAAAGTGCCCACGGACGTGCAGCAGCGC
CAGCGCATGTTCTCCAACATGGAGCAGCAGTACGAGATGGCGCGAGCCGC
CACACACACGATGCGTGGCGTGGGGCTTGGTTTCGGCTCCCAGCCACGTA
CTTTCGCAAGCTTTCTAGACCAT

BO08238.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:15:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG6340-RB 1542 CG6340-PB 1..1539 17..1555 7695 100 Plus
CG6340-RA 540 CG6340-PA 1..286 17..302 1430 100 Plus
CG6340-RF 324 CG6340-PF 1..285 17..301 1425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG6340-RB 1814 CG6340-RB 102..1640 17..1555 7695 100 Plus
CG6340-RE 1831 CG6340-RE 102..1657 17..1555 7490 98.9 Plus
CG6340-RF 2177 CG6340-RF 750..2003 302..1555 6270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15485330..15486438 447..1555 5545 100 Plus
X 23542271 X 15483198..15483421 79..302 1120 100 Plus
X 23542271 X 15485120..15485269 300..449 750 100 Plus
X 23542271 X 15482475..15482538 17..80 320 100 Plus
X 23542271 X 15482855..15482974 94..213 305 87 Plus
Blast to na_te.dros performed on 2014-11-27 16:15:04 has no hits.

BO08238.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:05 Download gff for BO08238.complete
Subject Subject Range Query Range Percent Splice Strand
CG6340-RB 1..1542 17..1556 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:31:47 Download gff for BO08238.complete
Subject Subject Range Query Range Percent Splice Strand
CG6340-RB 93..1637 9..1555 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:30 Download gff for BO08238.complete
Subject Subject Range Query Range Percent Splice Strand
CG6340-RB 102..1640 17..1557 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:05 Download gff for BO08238.complete
Subject Subject Range Query Range Percent Splice Strand
CG6340-RB 93..1637 9..1555 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:14:21 Download gff for BO08238.complete
Subject Subject Range Query Range Percent Splice Strand
CG6340-RB 102..1640 17..1557 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:14:21 Download gff for BO08238.complete
Subject Subject Range Query Range Percent Splice Strand
X 15485122..15485268 302..448 100 -> Plus
X 15482475..15482537 17..79 100 -> Plus
X 15483199..15483420 80..301 100 -> Plus
X 15485332..15486438 449..1557 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:30 Download gff for BO08238.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15376508..15376570 17..79 100 -> Plus
arm_X 15377232..15377453 80..301 100 -> Plus
arm_X 15379155..15379301 302..448 100 -> Plus
arm_X 15379365..15380471 449..1557 99   Plus

BO08238.pep Sequence

Translation from 16 to 1573

> BO08238.pep
MEALVNYSSEDDQEDAGFQIRAPQQQQQLRHLPHAKSPKTTTDSLLKQKN
NNNYGSGNSPRGKEREREREREREKTKPMSQQQSHRSSSRGRIDEEPKPS
SRHRQERDKDRERDRDRERDRDKDKKRSDSERSRDKGRDKNHSKGDHRHH
RTKDGDSHRERERDRDRERERDRDKDRDRRRSEKSSRHHSGKERHHHHHN
NSSSAAAAAVSAASVRRSHDERSRRRRDSRSGSRTPTGTPPSRRRHQSQQ
SRKYRERDSSSRSRSPKEEQATTLRGGAVAGSHMLLAKSGGGAGSTATNA
TAAARVAAAALVAANATAAAMAAGSSGGGGGGLLPTPNYAPKIPSLMSLE
LSTPAAAAPVAEPIQLPSYYNPSIINANRYAEQQQKRKLLWGSKKSENSA
NKWGNAHFSQDSDGKVASKFMRLMGIKNAGTSGNDDGKGGQAESTNGSAA
GEGNRAVRGAAPSGAAGGTKVPTDVQQRQRMFSNMEQQYEMARAATHTMR
GVGLGFGSQPRTFASFLDH

BO08238.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:19:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG6340-PB 513 CG6340-PB 1..513 1..513 2652 100 Plus
CG6340-PF 107 CG6340-PF 1..106 1..111 496 89.2 Plus
CG6340-PA 179 CG6340-PA 1..95 1..95 492 100 Plus
CG7971-PG 1062 CG7971-PG 393..656 23..273 246 25.7 Plus
CG7971-PA 1062 CG7971-PA 393..656 23..273 246 25.7 Plus
CG7971-PG 1062 CG7971-PG 432..673 47..267 224 25.6 Plus
CG7971-PG 1062 CG7971-PG 441..691 9..273 218 25.9 Plus
CG7971-PG 1062 CG7971-PG 279..544 11..275 207 26.7 Plus
CG7971-PG 1062 CG7971-PG 350..575 21..270 192 24 Plus
CG7971-PG 1062 CG7971-PG 195..456 3..275 176 24.8 Plus
CG7971-PG 1062 CG7971-PG 239..515 22..270 174 24.8 Plus
CG7971-PG 1062 CG7971-PG 497..782 8..275 157 25.4 Plus