Clone Sequence Records
BO08239.3prime Sequence
828 bp (811 high quality bases) assembled on 2006-01-06
> BO08239.3prime
ATGGTCTAGAAAGCTTGCGTAGAACTTATTGCGGACAAATGCGTTAATCA
AACGCGGTGTGTGCTTATCCAGGCTGCACAACTCTAACAAGTTCTCGTTT
CGTCCGCTGGAATATATCATGGAGCGTTGACGCTGCCGCAGGCTCACCAT
TATGAATTTAGCATTAGAGTTTCGCTTTTCGCGATACTTATCCATTAGAG
CAGCCAAGCACTTTGAATTATTTTCCGGATTTCCTCGCGCGGCACCCGGC
ACTAGTACCAAAAACACGTCGAACGTATTCTGCATATCCAATAGCGCTCT
GAACAGAATTTCATTTAGCGATTGCCTCACTTTGCCCACCTTCTGATTCT
CGCAACAGGTCTTGGCCTCTGAAACAGACATCTCATTTGTCCACGGCAAC
GCCTTCAATTTGCCACTGCGGTCGTGCCAAAACTCCACCGTCACCTTTCG
GTCGCTGCGGAAATAGCCAAAACCCAATGCCACCAGGGCGTCTAAGTACT
TCAGCGAACGACATGGACCAGAAAGGTATTTGCCCAGATAGGCCTGCTCC
AGATTGAGGGTAATGTGCAGTCGCCTACCGAGTGCCTTGTTCAGGCCAAA
GGATATTTCGTAGACGCTATGCAGGAAACTCGCCTTTTGGAACGAAGTAG
TTGCACACTGGAATTTAAATGTATTCTTGTTTTTGAGTGACGAAGGTAGT
ACCAACTGATTAACCACCTTTTTGGGCTTCCTCAAACGCATATCCTCCAA
CAGCAGACGTACGGGCGGAACATTGCTCGCCTTAAGCTTCTTCTTATCCA
GCAATTGCTCAGCAAAGGGGCGCACTCG
BO08239.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10803-PA | 1914 | CG10803-RA | 1102..1911 | 828..19 | 4050 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:55:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10803-RD | 4798 | CG10803-RD | 1287..2096 | 828..19 | 4050 | 100 | Minus |
| CG10803-RC | 2890 | CG10803-RC | 1389..2198 | 828..19 | 4050 | 100 | Minus |
| CG10803-RB | 2896 | CG10803-RB | 1395..2204 | 828..19 | 4050 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 14:55:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3487233..3487530 | 828..531 | 1490 | 100 | Minus |
| X | 23542271 | X | 3487597..3487789 | 530..338 | 965 | 100 | Minus |
| X | 23542271 | X | 3487839..3488022 | 341..158 | 920 | 100 | Minus |
| X | 23542271 | X | 3488075..3488213 | 157..19 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 14:55:38 has no hits.
BO08239.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:49 Download gff for
BO08239.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10803-PA | 1102..1914 | 18..828 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:33:50 Download gff for
BO08239.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10803-PA | 1102..1914 | 18..828 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:14:23 Download gff for
BO08239.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10803-RB | 1395..2204 | 19..828 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:34:28 Download gff for
BO08239.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10803-RB | 1395..2204 | 19..828 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:34:28 Download gff for
BO08239.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3488075..3488213 | 19..157 | 100 | | Minus |
| X | 3487233..3487530 | 531..828 | 100 | -> | Minus |
| X | 3487597..3487787 | 340..530 | 100 | -> | Minus |
| X | 3487841..3488022 | 158..339 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:14:23 Download gff for
BO08239.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3381266..3381563 | 531..828 | 100 | -> | Minus |
| arm_X | 3381630..3381820 | 340..530 | 100 | -> | Minus |
| arm_X | 3381874..3382055 | 158..339 | 100 | -> | Minus |
| arm_X | 3382108..3382246 | 19..157 | 100 | | Minus |
BO08239.5prime Sequence
954 bp (835 high quality bases) assembled on 2006-01-06
> BO08239.5prime
GAAGTTATCAGTCGACATGAAAAAGGGCAAGGGATCAAGCTCCCTTGGAT
CGAAGGAATCATCGGGGAGACCATCCACGGCAGTCCTGGTGTTCAAGAAG
TGCGCTAGATTTGCGGACTCTTCAGAATCGGCGGAGATCCAGCAGGACGG
CAAGGAGCAACTGCCTGAGAGGCAAGACTCGCTGGATGCCAAGGAATCTG
CAGGAATGGAAAAAGAGGCGATTAGCAATCAGCCATTAAAGGATGAGCCA
TCGAAAGATGAACCTAACCAAAGCGAGGGCACTGCCATTTCCACCATACC
GGCGATTGATAAACTACGTCGCTTCTGCTTTATTGGATCCACGGACGAGC
CCGTCTATACCACGCCCGCACTGGATCTTGTTGTCGAGAACAATTTCGCA
TCGCTAAAGGAACTCTGCTCCCAAGTGAGTGAAGACGAGCTGGTCGAGTG
CTTGTTGAGCGTTTTGGGCAGCGAACCAAATGAGGAGCAACCTCCCCGAC
CCGACGAGCCGCTCCTAATCCTGGCTGTTTTCTTTACCACGTGCGAAGAC
GAGAAGAAGCGAAATGCGGTGCGTAATAGATTCACCGACCTGATCACCAG
CGAATCGGATCTTCTACTGTTCGTCCAGTTGGTCAAGCGAGTCCAGAAGT
TGCTCGAACGTAAAACGCCCTTCAATCGCACAGTGCGAAAGGCCGTCCTC
AACTGGTATGGCACGAAATCGCTTGATCGCCTTCTCCACTTCTGGTCAAT
AGGCGATGGAAATCGTTGGCCTGCGCATCGCGATCTACTGTACCGCCTCC
ATTTTCGGCATGCCAATTTTTTACCGGAAATCATTGCTGCCTTAAGGCTG
CTCTCATCATCGCCAAAGGAGCTATCGCAGTGGCCTGATTTTTTACGCCC
TTGACCAGCTTTCGCGAAACTATTGAGGGTGTTGTGAAGCTTCGGCTACT
CACG
BO08239.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10803-PA | 1914 | CG10803-RA | 1..879 | 17..895 | 4395 | 100 | Plus |
| CG10803-PA | 1914 | CG10803-RA | 874..939 | 889..954 | 305 | 98.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:40:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10803-RE | 4744 | CG10803-RE | 191..1130 | 16..954 | 4675 | 99.9 | Plus |
| CG10803-RA | 2794 | CG10803-RA | 191..1130 | 16..954 | 4675 | 99.9 | Plus |
| CG10803-RD | 4798 | CG10803-RD | 191..1124 | 16..954 | 4575 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:40:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3486313..3487070 | 198..954 | 3740 | 99.9 | Plus |
| X | 23542271 | X | 3485840..3486021 | 16..197 | 910 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:40:33 has no hits.
BO08239.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:50 Download gff for
BO08239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10803-PA | 1..939 | 17..954 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:33:52 Download gff for
BO08239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10803-PA | 1..939 | 17..954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:11:13 Download gff for
BO08239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10803-RA | 183..1130 | 7..954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:43:58 Download gff for
BO08239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10803-RA | 183..1130 | 7..954 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:43:58 Download gff for
BO08239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3485832..3486021 | 7..197 | 97 | -> | Plus |
| X | 3486313..3487070 | 198..954 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:11:13 Download gff for
BO08239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3379865..3380054 | 7..197 | 97 | -> | Plus |
| arm_X | 3380346..3381103 | 198..954 | 99 | | Plus |
BO08239.complete Sequence
1945 bp (1945 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631113
> BO08239.complete
GAAGTTATCAGTCGACATGAAAAAGGGCAAGGGATCAAGCTCCCTTGGAT
CGAAGGAATCATCGGGGAGACCATCCACGGCAGTCCTGGTGTTCAAGAAG
TGCGCTAGATTTGCGGACTCTTCAGAATCGGCGGAGATCCAGCAGGACGG
CAAGGAGCAACTGCCTGAGAGGCAAGACTCGCTGGATGCCAAGGAATCTG
CAGGAATGGAAAAAGAGGCGATTAGCAATCAGCCATTAAAGGATGAGCCA
TCGAAAGATGAACCTAACCAAAGCGAGGGCACTGCCATTTCCACCATACC
GGCGATTGATAAACTACGTCGCTTCTGCTTTATTGGATCCACGGACGAGC
CCGTCTATACCACGCCCGCACTGGATCTTGTTGTCGAGAACAATTTCGCA
TCGCTAAAGGAACTCTGCTCCCAAGTGAGTGAAGACGAGCTGGTCGAGTG
CTTGTTGAGCGTTTTGGGCAGCGAACCAAATGAGGAGCAACCTCCCCGAC
CCGACGAGCCGCTCCTAATCCTGGCTGTTTTCTTTACCACGTGCGAAGAC
GAGAAGAAGCGAAATGCGGTGCGTAATAGATTCACCGACCTGATCACCAG
CGAATCGGATCTTCTACTGTTCGTCCAGTTGGTCAAGCGAGTCCAGAAGT
TGCTCGAACGTAAAACGCCCTTCAATCGCACAGTGCGAAAGGCCGTCCTC
AACTGGTATGGCACGAAATCGCTTGATCGCCTTCTCCACTTCTGGTCAAT
AGGCGATGGAAATCGTTGGCCTGCGCATCGCGATCTACTGTACCGCCTCC
ATTTTCGGCATGCCAATTTTTTACCGGAAATCATTGCTGCCTTAAGGCTG
CTCTCATCATCGCCAAAGGAGCTATCGCAGTGGCCTGATTTTTTAACGCC
CTTGACCAGCTTTCGCGAAACTATTGAGGGTGTTGTGAAGCTTCGGCTAC
TCACGGATCCCGAACAGGCTATCTCCATTGTGAAGAAGTTGTCGCTGAGC
TGGGAGCATGTGCCTTTTCATTTGCTTCACGACCCCAGGCTGGCGCATTT
TCTTATTCCACACATGAGCTATGAGCAACTTCTTCAGAAATGGCCACGCC
TCTCGCGACTTAACTCCCGAGTGCGCCCCTTTGCTGAGCAATTGCTGGAT
AAGAAGAAGCTTAAGGCGAGCAATGTTCCGCCCGTACGTCTGCTGTTGGA
GGATATGCGTTTGAGGAAGCCCAAAAAGGTGGTTAATCAGTTGGTACTAC
CTTCGTCACTCAAAAACAAGAATACATTTAAATTCCAGTGTGCAACTACT
TCGTTCCAAAAGGCGAGTTTCCTGCATAGCGTCTACGAAATATCCTTTGG
CCTGAACAAGGCACTCGGTAGGCGACTGCACATTACCCTCAATCTGGAGC
AGGCCTATCTGGGCAAATACCTTTCTGGTCCATGTCGTTCGCTGAAGTAC
TTAGACGCCCTGGTGGCATTGGGTTTTGGCTATTTCCGCAGCGACCGAAA
GGTGACGGTGGAGTTTTGGCACGACCGCAGTGGCAAATTGAAGGCGTTGC
CGTGGACAAATGAGATGTCTGTTTCAGAGGCCAAGACCTGTTGCGAGAAT
CAGAAGGTGGGCAAAGTGAGGCAATCGCTAAATGAAATTCTGTTCAGAGC
GCTATTGGATATGCAGAATACGTTCGACGTGTTTTTGGTACTAGTGCCGG
GTGCCGCGCGAGGAAATCCGGAAAATAATTCAAAGTGCTTGGCTGCTCTA
ATGGATAAGTATCGCGAAAAGCGAAACTCTAATGCTAAATTCATAATGGT
GAGCCTGCGGCAGCGTCAACGCTCCATGATATATTCCAGCGGACGAAACG
AGAACTTGTTAGAGTTGTGCAGCCTGGATAAGCACACACCGCGTTTGATT
AACGCATTTGTCCGCAATAAGTTCTACGCAAGCTTTCTAGACCAT
BO08239.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:17:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10803-RA | 1914 | CG10803-PA | 1..1911 | 17..1927 | 9555 | 100 | Plus |
| CG10803-RD | 1725 | CG10803-PD | 1..1722 | 206..1927 | 8610 | 100 | Plus |
| CG10803-RC | 1725 | CG10803-PC | 1..1722 | 206..1927 | 8610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:17:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10803-RA | 2794 | CG10803-RA | 191..2102 | 16..1927 | 9560 | 100 | Plus |
| CG10803-RD | 4798 | CG10803-RD | 191..2096 | 16..1927 | 9435 | 99.7 | Plus |
| CG10803-RC | 2890 | CG10803-RC | 469..2198 | 198..1927 | 8650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:17:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3486313..3487530 | 198..1415 | 6090 | 100 | Plus |
| X | 23542271 | X | 3487597..3487789 | 1416..1608 | 965 | 100 | Plus |
| X | 23542271 | X | 3487839..3488022 | 1605..1788 | 920 | 100 | Plus |
| X | 23542271 | X | 3485840..3486021 | 16..197 | 910 | 100 | Plus |
| X | 23542271 | X | 3488075..3488213 | 1789..1927 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:17:33 has no hits.
BO08239.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:00:28 Download gff for
BO08239.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10803-RA | 1..1914 | 17..1928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:18:47 Download gff for
BO08239.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10803-RA | 180..2099 | 7..1927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:07 Download gff for
BO08239.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10803-RA | 192..2102 | 17..1929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:00:28 Download gff for
BO08239.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10803-RA | 180..2099 | 7..1927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:45 Download gff for
BO08239.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10803-RA | 192..2102 | 17..1929 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:45 Download gff for
BO08239.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3485841..3486021 | 17..197 | 100 | -> | Plus |
| X | 3486313..3487530 | 198..1415 | 100 | -> | Plus |
| X | 3487597..3487787 | 1416..1606 | 100 | -> | Plus |
| X | 3487841..3488022 | 1607..1788 | 100 | -> | Plus |
| X | 3488075..3488213 | 1789..1929 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:07 Download gff for
BO08239.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3379874..3380054 | 17..197 | 100 | -> | Plus |
| arm_X | 3380346..3381563 | 198..1415 | 100 | -> | Plus |
| arm_X | 3381630..3381820 | 1416..1606 | 100 | -> | Plus |
| arm_X | 3381874..3382055 | 1607..1788 | 100 | -> | Plus |
| arm_X | 3382108..3382246 | 1789..1929 | 98 | | Plus |
BO08239.pep Sequence
Translation from 16 to 1945
> BO08239.pep
MKKGKGSSSLGSKESSGRPSTAVLVFKKCARFADSSESAEIQQDGKEQLP
ERQDSLDAKESAGMEKEAISNQPLKDEPSKDEPNQSEGTAISTIPAIDKL
RRFCFIGSTDEPVYTTPALDLVVENNFASLKELCSQVSEDELVECLLSVL
GSEPNEEQPPRPDEPLLILAVFFTTCEDEKKRNAVRNRFTDLITSESDLL
LFVQLVKRVQKLLERKTPFNRTVRKAVLNWYGTKSLDRLLHFWSIGDGNR
WPAHRDLLYRLHFRHANFLPEIIAALRLLSSSPKELSQWPDFLTPLTSFR
ETIEGVVKLRLLTDPEQAISIVKKLSLSWEHVPFHLLHDPRLAHFLIPHM
SYEQLLQKWPRLSRLNSRVRPFAEQLLDKKKLKASNVPPVRLLLEDMRLR
KPKKVVNQLVLPSSLKNKNTFKFQCATTSFQKASFLHSVYEISFGLNKAL
GRRLHITLNLEQAYLGKYLSGPCRSLKYLDALVALGFGYFRSDRKVTVEF
WHDRSGKLKALPWTNEMSVSEAKTCCENQKVGKVRQSLNEILFRALLDMQ
NTFDVFLVLVPGAARGNPENNSKCLAALMDKYREKRNSNAKFIMVSLRQR
QRSMIYSSGRNENLLELCSLDKHTPRLINAFVRNKFYASFLDH
BO08239.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:58:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10803-PA | 637 | CG10803-PA | 1..637 | 1..637 | 3282 | 100 | Plus |
| CG10803-PE | 617 | CG10803-PE | 1..617 | 1..637 | 3152 | 96.9 | Plus |
| CG10803-PD | 574 | CG10803-PD | 1..574 | 64..637 | 2972 | 100 | Plus |
| CG10803-PC | 574 | CG10803-PC | 1..574 | 64..637 | 2972 | 100 | Plus |
| CG10803-PB | 574 | CG10803-PB | 1..574 | 64..637 | 2972 | 100 | Plus |
