Clone BO08241 Report

Search the DGRC for BO08241

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:82
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCct2-RA
Protein status:BO08241.pep: validated full length
Sequenced Size:1177

Clone Sequence Records

BO08241.3prime Sequence

1007 bp (826 high quality bases) assembled on 2006-01-06

> BO08241.3prime
ATGGTCTAGAAAGCTTGCGTCGCTGCGTCGCTCGTCTACGACATCCTTAT
GCTCTGGTTGCTCCGAGTAATTGAGGTTTGCTGAGGCATTCACCTTATCA
GGGCGCTTTTGTTTTCGACTAAGGGATACGCAACTACCAGACCCGTAGTC
TGGTGGCAGCTCCATGTACTCATCCTCAGAGTCTAAGTCGTCTGTTGCGT
CTGGATCGTCACCGTTTACGGAGCCATTCGGACTGCCTGGTGGGCTGAGT
GCCTGAATGATTCGGCCCTTGGACTCGTTCCAGAAGGTGTTAAGCCGCTC
CCGGCCGAACAGGAGCAGGAAGGCATCGATGAACTCGCGCGACTTCTCCT
CCCACTTGGTGATGATGTCAACCTTGACTTTGGTCAGCTCCCGCTTGCCT
CGTGTCTTCAGCTCGTCCATCTTGTTCTGCAGACGGAATTTCTTCTCGGA
GAGAAAGGAGACGTTGAGCTCCTTGGCTGAGTAGCCTCTGGCCAGGTTCC
TGCGCACATATACATCGTAGTCCTTCACGATTCGGGCCACAATGTCCGAC
GTGGACACGCCCTCAGTGCGTTCCGTGGCCACAAACATTCCCTTCGCTTT
GAGTGGAGCATATATGTCGTTGACTCCGCCAGCTCCATAGGGTATGTCAT
CGTGGGCCACAAAGTCGATTTTGTGCTCCTCGATAAACTCCTCATTTAGC
GTCCACGGAGCATTCGGAACGATCTCATCCACGTAGCGGCAGTGGCGCAC
CGCCTCGTAGCGCTCGAATCCATTCATAACCGTGCGTCCCTTCATCCTGA
GGGTCAGCTCATCATTGCACACGCCGACGATGAGATAGACGTTGGGAAAC
ACATTCTTGGCCTGCATGAGTTGGCGGGCATGGCCTTGGTGGAACAGATC
ATATATGCCATCTGCATAGACCCGCACCCTGCGCGTCGTCTTCCCAGCTC
TGGCCATATGATAGGTGATCCTCTGTGTGTAGTCGCATCTCTCGAGCTCC
GCATGGG

BO08241.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG18330-PA 1146 Cct2-RA 162..1143 1000..19 4910 100 Minus
CG1049-PA 1581 Cct1-RA 1093..1238 450..305 380 90.4 Minus
CG1049-PD 1581 Cct1-RD 1093..1238 450..305 380 90.4 Minus
CG1049-PB 1581 Cct1-RB 1093..1238 450..305 380 90.4 Minus
CG1049-PC 1581 Cct1-RC 1093..1238 450..305 380 90.4 Minus
CG1049-PA 1581 Cct1-RA 602..689 941..854 190 88.6 Minus
CG1049-PD 1581 Cct1-RD 602..689 941..854 190 88.6 Minus
CG1049-PB 1581 Cct1-RB 602..689 941..854 190 88.6 Minus
CG1049-PC 1581 Cct1-RC 602..689 941..854 190 88.6 Minus
CG1049-PA 1581 Cct1-RA 955..1040 588..503 180 88.3 Minus
CG1049-PD 1581 Cct1-RD 955..1040 588..503 180 88.3 Minus
CG1049-PB 1581 Cct1-RB 955..1040 588..503 180 88.3 Minus
CG1049-PC 1581 Cct1-RC 955..1040 588..503 180 88.3 Minus
CG1049-PA 1581 Cct1-RA 748..824 795..719 135 87 Minus
CG1049-PD 1581 Cct1-RD 748..824 795..719 135 87 Minus
CG1049-PB 1581 Cct1-RB 748..824 795..719 135 87 Minus
CG1049-PC 1581 Cct1-RC 748..824 795..719 135 87 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:09:25
Subject Length Description Subject Range Query Range Score Percent Strand
Cct2-RA 1697 CG18330-RA 559..1547 1006..19 4920 99.9 Minus
Cct1-RF 2754 CG1049-RF 831..1629 1006..209 1735 81.4 Minus
Cct1-RE 2564 CG1049-RE 909..1707 1006..209 1735 81.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:09:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1554459..1555165 725..19 3535 100 Minus
3L 28110227 3L 1554125..1554401 1000..724 1385 100 Minus
3L 28110227 3L 1551863..1552379 725..209 1085 80.7 Minus
3L 28110227 3L 1551525..1551801 1000..724 650 82.3 Minus
Blast to na_te.dros performed on 2015-02-11 22:09:24 has no hits.

BO08241.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:53 Download gff for BO08241.3prime
Subject Subject Range Query Range Percent Splice Strand
Cct2-PA 154..1146 15..1007 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:33:56 Download gff for BO08241.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18330-PA 154..1146 15..1007 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:47:52 Download gff for BO08241.3prime
Subject Subject Range Query Range Percent Splice Strand
Cct2-RA 558..1552 14..1007 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:47:41 Download gff for BO08241.3prime
Subject Subject Range Query Range Percent Splice Strand
Cct2-RA 558..1552 14..1007 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:47:41 Download gff for BO08241.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1554117..1554401 724..1007 99 -> Minus
3L 1554461..1555170 14..723 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:47:52 Download gff for BO08241.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1554117..1554401 724..1007 99 -> Minus
arm_3L 1554461..1555170 14..723 99   Minus

BO08241.5prime Sequence

867 bp (733 high quality bases) assembled on 2006-01-06

> BO08241.5prime
GAAGTTATCAGTCGACATGGACAGAATGCCGAAAGAGGACGACGAATCTC
CAGTGTCGACGGCTCCTGCCACACCGACATCGCCGATGGAGTTTAAGATG
CTACCGCTCTTTATGGACTTTGAGGATTTTAGCATTTGCCAGCCTGCTCC
TTTCTCGTACGATGACAAGGCCATGCTGGAGCTCGAGAGATGCGACTACA
CACAGAGGATCACCTATCATATGGCCAGAGCTGGGAAGACGACGCGCAGG
GTGCGGGTCTATGCAGATGGCATATATGATCTGTTCCACCAAGGCCATGC
CCGCCAACTCATGCAGGCCAAGAATGTGTTTCCCAACGTCTATCTCATCG
TCGGCGTGTGCAATGATGAGCTGACCCTCAGGATGAAGGGACGCACGGTT
ATGAATGGATTCGAGCGCTACGAGGCGGTGCGCCACTGCCGCTACGTGGA
TGAGATCGTTCCGAATGCTCCGTGGACGCTAAATGAGGAGTTTATCGAGG
AGCACAAAATCGACTTTGTGGCCCACGATGACATACCCTATGGAGCTGGC
GGAGTCAACGACATATATGCTCCACTCAAAGCGAAGGGAATGTTTGTGGC
CACGGAACGCACTGAGGGCGTGTCCACGTCGGACATTGTGGCCCGAATCG
TGAAGGACTACGATGTATATGTGCGCAGGAACCTGGCCAGAGGCTACTCA
GCCAAGGAGCTCAACGTCTCCTTTCTCTCCGAGAAGAAATTCCGTCTGCA
GAACAAGATGGACGAGCTGAAGACACGAGGCAAGCGGGAGCTGACCAAAG
TCAAGGTTGACATCATCACCAAGTGGGAGGAGAAGTCGCGCGAGTTCATC
GATGCCTTCCTGCTCCT

BO08241.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG18330-PA 1146 Cct2-RA 1..851 17..867 4255 100 Plus
CG1049-PA 1581 Cct1-RA 1093..1229 728..864 360 90.5 Plus
CG1049-PD 1581 Cct1-RD 1093..1229 728..864 360 90.5 Plus
CG1049-PB 1581 Cct1-RB 1093..1229 728..864 360 90.5 Plus
CG1049-PC 1581 Cct1-RC 1093..1229 728..864 360 90.5 Plus
CG1049-PA 1581 Cct1-RA 602..689 237..324 190 88.6 Plus
CG1049-PD 1581 Cct1-RD 602..689 237..324 190 88.6 Plus
CG1049-PB 1581 Cct1-RB 602..689 237..324 190 88.6 Plus
CG1049-PC 1581 Cct1-RC 602..689 237..324 190 88.6 Plus
CG1049-PA 1581 Cct1-RA 955..1040 590..675 180 88.3 Plus
CG1049-PD 1581 Cct1-RD 955..1040 590..675 180 88.3 Plus
CG1049-PB 1581 Cct1-RB 955..1040 590..675 180 88.3 Plus
CG1049-PC 1581 Cct1-RC 955..1040 590..675 180 88.3 Plus
CG1049-PA 1581 Cct1-RA 748..824 383..459 135 87 Plus
CG1049-PD 1581 Cct1-RD 748..824 383..459 135 87 Plus
CG1049-PB 1581 Cct1-RB 748..824 383..459 135 87 Plus
CG1049-PC 1581 Cct1-RC 748..824 383..459 135 87 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:04:39
Subject Length Description Subject Range Query Range Score Percent Strand
Cct2-RA 1697 CG18330-RA 405..1255 17..867 4255 100 Plus
Cct1-RF 2754 CG1049-RF 794..1524 134..864 1720 82.4 Plus
Cct1-RE 2564 CG1049-RE 872..1602 134..864 1720 82.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:04:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1554459..1554873 453..867 2075 100 Plus
3L 28110227 3L 1554078..1554401 131..454 1620 100 Plus
3L 28110227 3L 1551863..1552274 453..864 1010 83 Plus
3L 28110227 3L 1551481..1551801 134..454 720 81.6 Plus
3L 28110227 3L 1553897..1554010 17..130 570 100 Plus
Blast to na_te.dros performed on 2015-02-11 18:04:34 has no hits.

BO08241.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:53 Download gff for BO08241.5prime
Subject Subject Range Query Range Percent Splice Strand
Cct2-PA 1..851 17..867 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:33:57 Download gff for BO08241.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18330-PA 1..851 17..867 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:46:22 Download gff for BO08241.5prime
Subject Subject Range Query Range Percent Splice Strand
Cct2-RA 396..1255 5..867 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:27:29 Download gff for BO08241.5prime
Subject Subject Range Query Range Percent Splice Strand
Cct2-RA 396..1255 5..867 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:27:29 Download gff for BO08241.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1553888..1554010 5..130 96 -> Plus
3L 1554078..1554401 131..454 100 -> Plus
3L 1554461..1554873 455..867 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:46:22 Download gff for BO08241.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1553888..1554010 5..130 96 -> Plus
arm_3L 1554078..1554401 131..454 100 -> Plus
arm_3L 1554461..1554873 455..867 100   Plus

BO08241.complete Sequence

1177 bp (1177 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ631114

> BO08241.complete
GAAGTTATCAGTCGACATGGACAGAATGCCGAAAGAGGACGACGAATCTC
CAGTGTCGACGGCTCCTGCCACACCGACATCGCCGATGGAGTTTAAGATG
CTACCGCTCTTTATGGACTTTGAGGATTTTAGCATTTGCCAGCCTGCTCC
TTTCTCGTACGATGACAAGGCCATGCTGGAGCTCGAGAGATGCGACTACA
CACAGAGGATCACCTATCATATGGCCAGAGCTGGGAAGACGACGCGCAGG
GTGCGGGTCTATGCAGATGGCATATATGATCTGTTCCACCAAGGCCATGC
CCGCCAACTCATGCAGGCCAAGAATGTGTTTCCCAACGTCTATCTCATCG
TCGGCGTGTGCAATGATGAGCTGACCCTCAGGATGAAGGGACGCACGGTT
ATGAATGGATTCGAGCGCTACGAGGCGGTGCGCCACTGCCGCTACGTGGA
TGAGATCGTTCCGAATGCTCCGTGGACGCTAAATGAGGAGTTTATCGAGG
AGCACAAAATCGACTTTGTGGCCCACGATGACATACCCTATGGAGCTGGC
GGAGTCAACGACATATATGCTCCACTCAAAGCGAAGGGAATGTTTGTGGC
CACGGAACGCACTGAGGGCGTGTCCACGTCGGACATTGTGGCCCGAATCG
TGAAGGACTACGATGTATATGTGCGCAGGAACCTGGCCAGAGGCTACTCA
GCCAAGGAGCTCAACGTCTCCTTTCTCTCCGAGAAGAAATTCCGTCTGCA
GAACAAGATGGACGAGCTGAAGACACGAGGCAAGCGGGAGCTGACCAAAG
TCAAGGTTGACATCATCACCAAGTGGGAGGAGAAGTCGCGCGAGTTCATC
GATGCCTTCCTGCTCCTGTTCGGCCGGGAGCGGCTTAACACCTTCTGGAA
CGAGTCCAAGGGCCGAATCATTCAGGCACTCAGCCCACCAGGCAGTCCGA
ATGGCTCCGTAAACGGTGACGATCCAGACGCAACAGACGACTTAGACTCT
GAGGATGAGTACATGGAGCTGCCACCAGACTACGGGTCTGGTAGTTGCGT
ATCCCTTAGTCGAAAACAAAAGCGCCCTGATAAGGTGAATGCCTCAGCAA
ACCTCAATTACTCGGAGCAACCAGAGCATAAGGATGTCGTAGACGAGCGA
CGCAGCGACGCAAGCTTTCTAGACCAT

BO08241.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:46:07
Subject Length Description Subject Range Query Range Score Percent Strand
Cct2-RA 1146 CG18330-PA 1..1143 17..1159 5715 100 Plus
Cct1-RF 1581 CG1049-PF 499..1334 134..969 1795 81 Plus
Cct1-RE 1581 CG1049-PE 499..1334 134..969 1795 81 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:46:08
Subject Length Description Subject Range Query Range Score Percent Strand
Cct2-RA 1697 CG18330-RA 405..1547 17..1159 5715 100 Plus
Cct1-RF 2754 CG1049-RF 794..1629 134..969 1795 81 Plus
Cct1-RE 2564 CG1049-RE 872..1707 134..969 1795 81 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:46:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1554459..1555165 453..1159 3535 100 Plus
3L 28110227 3L 1554078..1554401 131..454 1620 100 Plus
3L 28110227 3L 1551863..1552379 453..969 1085 80.7 Plus
3L 28110227 3L 1551481..1551801 134..454 720 81.6 Plus
3L 28110227 3L 1553897..1554010 17..130 570 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:46:06 has no hits.

BO08241.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:07 Download gff for BO08241.complete
Subject Subject Range Query Range Percent Splice Strand
Cct2-RA 1..1146 17..1163 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:31:50 Download gff for BO08241.complete
Subject Subject Range Query Range Percent Splice Strand
Cct2-RA 396..1552 5..1164 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:26:16 Download gff for BO08241.complete
Subject Subject Range Query Range Percent Splice Strand
Cct2-RA 405..1547 17..1161 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:07 Download gff for BO08241.complete
Subject Subject Range Query Range Percent Splice Strand
Cct2-RA 396..1552 5..1164 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:04:20 Download gff for BO08241.complete
Subject Subject Range Query Range Percent Splice Strand
Cct2-RA 405..1547 17..1161 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:04:20 Download gff for BO08241.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1553897..1554010 17..130 100 -> Plus
3L 1554078..1554401 131..454 100 -> Plus
3L 1554461..1555165 455..1161 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:26:16 Download gff for BO08241.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1553897..1554010 17..130 100 -> Plus
arm_3L 1554078..1554401 131..454 100 -> Plus
arm_3L 1554461..1555165 455..1161 99   Plus

BO08241.pep Sequence

Translation from 16 to 1177

> BO08241.pep
MDRMPKEDDESPVSTAPATPTSPMEFKMLPLFMDFEDFSICQPAPFSYDD
KAMLELERCDYTQRITYHMARAGKTTRRVRVYADGIYDLFHQGHARQLMQ
AKNVFPNVYLIVGVCNDELTLRMKGRTVMNGFERYEAVRHCRYVDEIVPN
APWTLNEEFIEEHKIDFVAHDDIPYGAGGVNDIYAPLKAKGMFVATERTE
GVSTSDIVARIVKDYDVYVRRNLARGYSAKELNVSFLSEKKFRLQNKMDE
LKTRGKRELTKVKVDIITKWEEKSREFIDAFLLLFGRERLNTFWNESKGR
IIQALSPPGSPNGSVNGDDPDATDDLDSEDEYMELPPDYGSGSCVSLSRK
QKRPDKVNASANLNYSEQPEHKDVVDERRSDASFLDH

BO08241.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:19:32
Subject Length Description Subject Range Query Range Score Percent Strand
Cct2-PA 381 CG18330-PA 1..381 1..381 2010 100 Plus
Cct1-PF 526 CG1049-PF 158..515 32..382 1363 75.1 Plus
Cct1-PE 526 CG1049-PE 158..515 32..382 1363 75.1 Plus
Cct1-PC 526 CG1049-PC 158..515 32..382 1363 75.1 Plus
Cct1-PB 526 CG1049-PB 158..515 32..382 1363 75.1 Plus