Clone Sequence Records
BO08241.3prime Sequence
1007 bp (826 high quality bases) assembled on 2006-01-06
> BO08241.3prime
ATGGTCTAGAAAGCTTGCGTCGCTGCGTCGCTCGTCTACGACATCCTTAT
GCTCTGGTTGCTCCGAGTAATTGAGGTTTGCTGAGGCATTCACCTTATCA
GGGCGCTTTTGTTTTCGACTAAGGGATACGCAACTACCAGACCCGTAGTC
TGGTGGCAGCTCCATGTACTCATCCTCAGAGTCTAAGTCGTCTGTTGCGT
CTGGATCGTCACCGTTTACGGAGCCATTCGGACTGCCTGGTGGGCTGAGT
GCCTGAATGATTCGGCCCTTGGACTCGTTCCAGAAGGTGTTAAGCCGCTC
CCGGCCGAACAGGAGCAGGAAGGCATCGATGAACTCGCGCGACTTCTCCT
CCCACTTGGTGATGATGTCAACCTTGACTTTGGTCAGCTCCCGCTTGCCT
CGTGTCTTCAGCTCGTCCATCTTGTTCTGCAGACGGAATTTCTTCTCGGA
GAGAAAGGAGACGTTGAGCTCCTTGGCTGAGTAGCCTCTGGCCAGGTTCC
TGCGCACATATACATCGTAGTCCTTCACGATTCGGGCCACAATGTCCGAC
GTGGACACGCCCTCAGTGCGTTCCGTGGCCACAAACATTCCCTTCGCTTT
GAGTGGAGCATATATGTCGTTGACTCCGCCAGCTCCATAGGGTATGTCAT
CGTGGGCCACAAAGTCGATTTTGTGCTCCTCGATAAACTCCTCATTTAGC
GTCCACGGAGCATTCGGAACGATCTCATCCACGTAGCGGCAGTGGCGCAC
CGCCTCGTAGCGCTCGAATCCATTCATAACCGTGCGTCCCTTCATCCTGA
GGGTCAGCTCATCATTGCACACGCCGACGATGAGATAGACGTTGGGAAAC
ACATTCTTGGCCTGCATGAGTTGGCGGGCATGGCCTTGGTGGAACAGATC
ATATATGCCATCTGCATAGACCCGCACCCTGCGCGTCGTCTTCCCAGCTC
TGGCCATATGATAGGTGATCCTCTGTGTGTAGTCGCATCTCTCGAGCTCC
GCATGGG
BO08241.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18330-PA | 1146 | Cct2-RA | 162..1143 | 1000..19 | 4910 | 100 | Minus |
CG1049-PA | 1581 | Cct1-RA | 1093..1238 | 450..305 | 380 | 90.4 | Minus |
CG1049-PD | 1581 | Cct1-RD | 1093..1238 | 450..305 | 380 | 90.4 | Minus |
CG1049-PB | 1581 | Cct1-RB | 1093..1238 | 450..305 | 380 | 90.4 | Minus |
CG1049-PC | 1581 | Cct1-RC | 1093..1238 | 450..305 | 380 | 90.4 | Minus |
CG1049-PA | 1581 | Cct1-RA | 602..689 | 941..854 | 190 | 88.6 | Minus |
CG1049-PD | 1581 | Cct1-RD | 602..689 | 941..854 | 190 | 88.6 | Minus |
CG1049-PB | 1581 | Cct1-RB | 602..689 | 941..854 | 190 | 88.6 | Minus |
CG1049-PC | 1581 | Cct1-RC | 602..689 | 941..854 | 190 | 88.6 | Minus |
CG1049-PA | 1581 | Cct1-RA | 955..1040 | 588..503 | 180 | 88.3 | Minus |
CG1049-PD | 1581 | Cct1-RD | 955..1040 | 588..503 | 180 | 88.3 | Minus |
CG1049-PB | 1581 | Cct1-RB | 955..1040 | 588..503 | 180 | 88.3 | Minus |
CG1049-PC | 1581 | Cct1-RC | 955..1040 | 588..503 | 180 | 88.3 | Minus |
CG1049-PA | 1581 | Cct1-RA | 748..824 | 795..719 | 135 | 87 | Minus |
CG1049-PD | 1581 | Cct1-RD | 748..824 | 795..719 | 135 | 87 | Minus |
CG1049-PB | 1581 | Cct1-RB | 748..824 | 795..719 | 135 | 87 | Minus |
CG1049-PC | 1581 | Cct1-RC | 748..824 | 795..719 | 135 | 87 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:09:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cct2-RA | 1697 | CG18330-RA | 559..1547 | 1006..19 | 4920 | 99.9 | Minus |
Cct1-RF | 2754 | CG1049-RF | 831..1629 | 1006..209 | 1735 | 81.4 | Minus |
Cct1-RE | 2564 | CG1049-RE | 909..1707 | 1006..209 | 1735 | 81.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:09:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1554459..1555165 | 725..19 | 3535 | 100 | Minus |
3L | 28110227 | 3L | 1554125..1554401 | 1000..724 | 1385 | 100 | Minus |
3L | 28110227 | 3L | 1551863..1552379 | 725..209 | 1085 | 80.7 | Minus |
3L | 28110227 | 3L | 1551525..1551801 | 1000..724 | 650 | 82.3 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:09:24 has no hits.
BO08241.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:53 Download gff for
BO08241.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct2-PA | 154..1146 | 15..1007 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:33:56 Download gff for
BO08241.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18330-PA | 154..1146 | 15..1007 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:47:52 Download gff for
BO08241.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct2-RA | 558..1552 | 14..1007 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:47:41 Download gff for
BO08241.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct2-RA | 558..1552 | 14..1007 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:47:41 Download gff for
BO08241.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1554117..1554401 | 724..1007 | 99 | -> | Minus |
3L | 1554461..1555170 | 14..723 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:47:52 Download gff for
BO08241.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1554117..1554401 | 724..1007 | 99 | -> | Minus |
arm_3L | 1554461..1555170 | 14..723 | 99 | | Minus |
BO08241.5prime Sequence
867 bp (733 high quality bases) assembled on 2006-01-06
> BO08241.5prime
GAAGTTATCAGTCGACATGGACAGAATGCCGAAAGAGGACGACGAATCTC
CAGTGTCGACGGCTCCTGCCACACCGACATCGCCGATGGAGTTTAAGATG
CTACCGCTCTTTATGGACTTTGAGGATTTTAGCATTTGCCAGCCTGCTCC
TTTCTCGTACGATGACAAGGCCATGCTGGAGCTCGAGAGATGCGACTACA
CACAGAGGATCACCTATCATATGGCCAGAGCTGGGAAGACGACGCGCAGG
GTGCGGGTCTATGCAGATGGCATATATGATCTGTTCCACCAAGGCCATGC
CCGCCAACTCATGCAGGCCAAGAATGTGTTTCCCAACGTCTATCTCATCG
TCGGCGTGTGCAATGATGAGCTGACCCTCAGGATGAAGGGACGCACGGTT
ATGAATGGATTCGAGCGCTACGAGGCGGTGCGCCACTGCCGCTACGTGGA
TGAGATCGTTCCGAATGCTCCGTGGACGCTAAATGAGGAGTTTATCGAGG
AGCACAAAATCGACTTTGTGGCCCACGATGACATACCCTATGGAGCTGGC
GGAGTCAACGACATATATGCTCCACTCAAAGCGAAGGGAATGTTTGTGGC
CACGGAACGCACTGAGGGCGTGTCCACGTCGGACATTGTGGCCCGAATCG
TGAAGGACTACGATGTATATGTGCGCAGGAACCTGGCCAGAGGCTACTCA
GCCAAGGAGCTCAACGTCTCCTTTCTCTCCGAGAAGAAATTCCGTCTGCA
GAACAAGATGGACGAGCTGAAGACACGAGGCAAGCGGGAGCTGACCAAAG
TCAAGGTTGACATCATCACCAAGTGGGAGGAGAAGTCGCGCGAGTTCATC
GATGCCTTCCTGCTCCT
BO08241.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18330-PA | 1146 | Cct2-RA | 1..851 | 17..867 | 4255 | 100 | Plus |
CG1049-PA | 1581 | Cct1-RA | 1093..1229 | 728..864 | 360 | 90.5 | Plus |
CG1049-PD | 1581 | Cct1-RD | 1093..1229 | 728..864 | 360 | 90.5 | Plus |
CG1049-PB | 1581 | Cct1-RB | 1093..1229 | 728..864 | 360 | 90.5 | Plus |
CG1049-PC | 1581 | Cct1-RC | 1093..1229 | 728..864 | 360 | 90.5 | Plus |
CG1049-PA | 1581 | Cct1-RA | 602..689 | 237..324 | 190 | 88.6 | Plus |
CG1049-PD | 1581 | Cct1-RD | 602..689 | 237..324 | 190 | 88.6 | Plus |
CG1049-PB | 1581 | Cct1-RB | 602..689 | 237..324 | 190 | 88.6 | Plus |
CG1049-PC | 1581 | Cct1-RC | 602..689 | 237..324 | 190 | 88.6 | Plus |
CG1049-PA | 1581 | Cct1-RA | 955..1040 | 590..675 | 180 | 88.3 | Plus |
CG1049-PD | 1581 | Cct1-RD | 955..1040 | 590..675 | 180 | 88.3 | Plus |
CG1049-PB | 1581 | Cct1-RB | 955..1040 | 590..675 | 180 | 88.3 | Plus |
CG1049-PC | 1581 | Cct1-RC | 955..1040 | 590..675 | 180 | 88.3 | Plus |
CG1049-PA | 1581 | Cct1-RA | 748..824 | 383..459 | 135 | 87 | Plus |
CG1049-PD | 1581 | Cct1-RD | 748..824 | 383..459 | 135 | 87 | Plus |
CG1049-PB | 1581 | Cct1-RB | 748..824 | 383..459 | 135 | 87 | Plus |
CG1049-PC | 1581 | Cct1-RC | 748..824 | 383..459 | 135 | 87 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:04:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cct2-RA | 1697 | CG18330-RA | 405..1255 | 17..867 | 4255 | 100 | Plus |
Cct1-RF | 2754 | CG1049-RF | 794..1524 | 134..864 | 1720 | 82.4 | Plus |
Cct1-RE | 2564 | CG1049-RE | 872..1602 | 134..864 | 1720 | 82.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:04:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1554459..1554873 | 453..867 | 2075 | 100 | Plus |
3L | 28110227 | 3L | 1554078..1554401 | 131..454 | 1620 | 100 | Plus |
3L | 28110227 | 3L | 1551863..1552274 | 453..864 | 1010 | 83 | Plus |
3L | 28110227 | 3L | 1551481..1551801 | 134..454 | 720 | 81.6 | Plus |
3L | 28110227 | 3L | 1553897..1554010 | 17..130 | 570 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:04:34 has no hits.
BO08241.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:53 Download gff for
BO08241.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct2-PA | 1..851 | 17..867 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:33:57 Download gff for
BO08241.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18330-PA | 1..851 | 17..867 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:46:22 Download gff for
BO08241.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct2-RA | 396..1255 | 5..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:27:29 Download gff for
BO08241.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct2-RA | 396..1255 | 5..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:27:29 Download gff for
BO08241.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1553888..1554010 | 5..130 | 96 | -> | Plus |
3L | 1554078..1554401 | 131..454 | 100 | -> | Plus |
3L | 1554461..1554873 | 455..867 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:46:22 Download gff for
BO08241.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1553888..1554010 | 5..130 | 96 | -> | Plus |
arm_3L | 1554078..1554401 | 131..454 | 100 | -> | Plus |
arm_3L | 1554461..1554873 | 455..867 | 100 | | Plus |
BO08241.complete Sequence
1177 bp (1177 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631114
> BO08241.complete
GAAGTTATCAGTCGACATGGACAGAATGCCGAAAGAGGACGACGAATCTC
CAGTGTCGACGGCTCCTGCCACACCGACATCGCCGATGGAGTTTAAGATG
CTACCGCTCTTTATGGACTTTGAGGATTTTAGCATTTGCCAGCCTGCTCC
TTTCTCGTACGATGACAAGGCCATGCTGGAGCTCGAGAGATGCGACTACA
CACAGAGGATCACCTATCATATGGCCAGAGCTGGGAAGACGACGCGCAGG
GTGCGGGTCTATGCAGATGGCATATATGATCTGTTCCACCAAGGCCATGC
CCGCCAACTCATGCAGGCCAAGAATGTGTTTCCCAACGTCTATCTCATCG
TCGGCGTGTGCAATGATGAGCTGACCCTCAGGATGAAGGGACGCACGGTT
ATGAATGGATTCGAGCGCTACGAGGCGGTGCGCCACTGCCGCTACGTGGA
TGAGATCGTTCCGAATGCTCCGTGGACGCTAAATGAGGAGTTTATCGAGG
AGCACAAAATCGACTTTGTGGCCCACGATGACATACCCTATGGAGCTGGC
GGAGTCAACGACATATATGCTCCACTCAAAGCGAAGGGAATGTTTGTGGC
CACGGAACGCACTGAGGGCGTGTCCACGTCGGACATTGTGGCCCGAATCG
TGAAGGACTACGATGTATATGTGCGCAGGAACCTGGCCAGAGGCTACTCA
GCCAAGGAGCTCAACGTCTCCTTTCTCTCCGAGAAGAAATTCCGTCTGCA
GAACAAGATGGACGAGCTGAAGACACGAGGCAAGCGGGAGCTGACCAAAG
TCAAGGTTGACATCATCACCAAGTGGGAGGAGAAGTCGCGCGAGTTCATC
GATGCCTTCCTGCTCCTGTTCGGCCGGGAGCGGCTTAACACCTTCTGGAA
CGAGTCCAAGGGCCGAATCATTCAGGCACTCAGCCCACCAGGCAGTCCGA
ATGGCTCCGTAAACGGTGACGATCCAGACGCAACAGACGACTTAGACTCT
GAGGATGAGTACATGGAGCTGCCACCAGACTACGGGTCTGGTAGTTGCGT
ATCCCTTAGTCGAAAACAAAAGCGCCCTGATAAGGTGAATGCCTCAGCAA
ACCTCAATTACTCGGAGCAACCAGAGCATAAGGATGTCGTAGACGAGCGA
CGCAGCGACGCAAGCTTTCTAGACCAT
BO08241.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:46:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cct2-RA | 1146 | CG18330-PA | 1..1143 | 17..1159 | 5715 | 100 | Plus |
Cct1-RF | 1581 | CG1049-PF | 499..1334 | 134..969 | 1795 | 81 | Plus |
Cct1-RE | 1581 | CG1049-PE | 499..1334 | 134..969 | 1795 | 81 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:46:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cct2-RA | 1697 | CG18330-RA | 405..1547 | 17..1159 | 5715 | 100 | Plus |
Cct1-RF | 2754 | CG1049-RF | 794..1629 | 134..969 | 1795 | 81 | Plus |
Cct1-RE | 2564 | CG1049-RE | 872..1707 | 134..969 | 1795 | 81 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:46:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1554459..1555165 | 453..1159 | 3535 | 100 | Plus |
3L | 28110227 | 3L | 1554078..1554401 | 131..454 | 1620 | 100 | Plus |
3L | 28110227 | 3L | 1551863..1552379 | 453..969 | 1085 | 80.7 | Plus |
3L | 28110227 | 3L | 1551481..1551801 | 134..454 | 720 | 81.6 | Plus |
3L | 28110227 | 3L | 1553897..1554010 | 17..130 | 570 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:46:06 has no hits.
BO08241.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:07 Download gff for
BO08241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct2-RA | 1..1146 | 17..1163 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:31:50 Download gff for
BO08241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct2-RA | 396..1552 | 5..1164 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:26:16 Download gff for
BO08241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct2-RA | 405..1547 | 17..1161 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:07 Download gff for
BO08241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct2-RA | 396..1552 | 5..1164 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:04:20 Download gff for
BO08241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct2-RA | 405..1547 | 17..1161 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:04:20 Download gff for
BO08241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1553897..1554010 | 17..130 | 100 | -> | Plus |
3L | 1554078..1554401 | 131..454 | 100 | -> | Plus |
3L | 1554461..1555165 | 455..1161 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:26:16 Download gff for
BO08241.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1553897..1554010 | 17..130 | 100 | -> | Plus |
arm_3L | 1554078..1554401 | 131..454 | 100 | -> | Plus |
arm_3L | 1554461..1555165 | 455..1161 | 99 | | Plus |
BO08241.pep Sequence
Translation from 16 to 1177
> BO08241.pep
MDRMPKEDDESPVSTAPATPTSPMEFKMLPLFMDFEDFSICQPAPFSYDD
KAMLELERCDYTQRITYHMARAGKTTRRVRVYADGIYDLFHQGHARQLMQ
AKNVFPNVYLIVGVCNDELTLRMKGRTVMNGFERYEAVRHCRYVDEIVPN
APWTLNEEFIEEHKIDFVAHDDIPYGAGGVNDIYAPLKAKGMFVATERTE
GVSTSDIVARIVKDYDVYVRRNLARGYSAKELNVSFLSEKKFRLQNKMDE
LKTRGKRELTKVKVDIITKWEEKSREFIDAFLLLFGRERLNTFWNESKGR
IIQALSPPGSPNGSVNGDDPDATDDLDSEDEYMELPPDYGSGSCVSLSRK
QKRPDKVNASANLNYSEQPEHKDVVDERRSDASFLDH
BO08241.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:19:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cct2-PA | 381 | CG18330-PA | 1..381 | 1..381 | 2010 | 100 | Plus |
Cct1-PF | 526 | CG1049-PF | 158..515 | 32..382 | 1363 | 75.1 | Plus |
Cct1-PE | 526 | CG1049-PE | 158..515 | 32..382 | 1363 | 75.1 | Plus |
Cct1-PC | 526 | CG1049-PC | 158..515 | 32..382 | 1363 | 75.1 | Plus |
Cct1-PB | 526 | CG1049-PB | 158..515 | 32..382 | 1363 | 75.1 | Plus |