Clone Sequence Records
BO08242.3prime Sequence
903 bp (812 high quality bases) assembled on 2006-01-06
> BO08242.3prime
ATGGTCTAGAAAGCTTGCGTAGACGAACTTCTTCTGCTCCCCGTACAGCG
ATTCGTAGAGAGAGGGGGCCAGGTGTTCGGCTAGGAAGATCTGCAGTCGC
TCGCTGGATGTCACTGGGGTGTAGCGGGCCATGGGGAAGGTCCTGGTCAC
GGCATCGATGAGGACGCGCAGCGTGGGCTGGATATCGGCCGCCTGGCGCG
AATACTTCTCCACCGATGTCATGGCCGCCTCGTAGTAATCCTCGCCGTAG
GTCTTCTTCTGCTCCGAGGAAAGCTGGTTCCACATTTGCTTGGCCTGGTC
ACGCAGCTCGGTCTCGTTCAGCCAGCCGTTGCCGGGTGCAAATTCACCGG
CAGCCACCACGGACACGTCCACTCCCCGGGTGCGCATCTCCTGGCGCAGA
CAGGCGGCAAAGCAATCCACGGCCGCTTGGGTGGCACACTGGATTCCCCG
GACGGGAGATGGCACACGATTCAGGCCGGAGGTCAGGAAAACGACGCGAC
CATGGGCACGGCGAACCAGGGGCAGGAAGATTTGTGTTAGCCGAGCGGAA
CCCAAAAGGTTGAGGTCCAAGCTCTTGCGAAGCACCGCAAATGGAATCCA
CTCGAGTTCACCCAAAGCTATCCAGTGGGCGCAGTGCACCACAGACCACA
ATCCTTCGGCGCCGTGGGGTAAGTGCTGCGACACATAGCGGGCAGCTTCC
AGGATGGTTTTCTCCGACGTGACGTCCAAGTGCAGCAGCTTCATGCGCCC
CGAGGTCACCTCCTTGAGAATCTTGGCCTCGTCCGACTCCTCGATGGGCG
TGTTGAATCCTGCGTAAACGGTGAAGCCCAGGTCGTCCAGTTTCTTGGGC
CAGTACCAGGCCAGTGGAGCCTCGCAGCCAGTGATTAGCACGCCCTTGCC
CGA
BO08242.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8888-PA | 1167 | CG8888-RA | 280..1164 | 903..19 | 4375 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:52:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8888-RA | 1708 | CG8888-RA | 505..1389 | 903..19 | 4395 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:52:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12065689..12065947 | 294..552 | 1295 | 100 | Plus |
| 2R | 25286936 | 2R | 12066494..12066691 | 706..903 | 960 | 99 | Plus |
| 2R | 25286936 | 2R | 12064884..12065061 | 19..196 | 890 | 100 | Plus |
| 2R | 25286936 | 2R | 12066006..12066161 | 550..705 | 780 | 100 | Plus |
| 2R | 25286936 | 2R | 12065128..12065233 | 192..297 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 15:52:39 has no hits.
BO08242.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:54 Download gff for
BO08242.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8888-PA | 281..1167 | 16..902 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:33:59 Download gff for
BO08242.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8888-PA | 281..1167 | 16..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:10:11 Download gff for
BO08242.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8888-RA | 506..1399 | 12..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:25:26 Download gff for
BO08242.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8888-RA | 506..1399 | 12..902 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:25:26 Download gff for
BO08242.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12064874..12065057 | 12..192 | 97 | <- | Plus |
| 2R | 12065129..12065230 | 193..294 | 100 | <- | Plus |
| 2R | 12065690..12065946 | 295..551 | 100 | <- | Plus |
| 2R | 12066008..12066161 | 552..705 | 100 | <- | Plus |
| 2R | 12066494..12066690 | 706..902 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:10:11 Download gff for
BO08242.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7952379..7952562 | 12..192 | 97 | <- | Plus |
| arm_2R | 7952634..7952735 | 193..294 | 100 | <- | Plus |
| arm_2R | 7953195..7953451 | 295..551 | 100 | <- | Plus |
| arm_2R | 7953513..7953666 | 552..705 | 100 | <- | Plus |
| arm_2R | 7953999..7954195 | 706..902 | 98 | | Plus |
BO08242.5prime Sequence
863 bp (861 high quality bases) assembled on 2006-01-06
> BO08242.5prime
GAAGTTATCAGTCGACATGCAGGTCTTCGATAACAATATGCGCCGTGCCT
CGCGACGCGCCTCCTTGCGACGAGGATCCATATCGGCACTGCCGCAGAAG
TCGCACGAGATTCCCTGGGACATATTCGAGCGACTATTCATGCCCTTCCT
GTTCTGCCAGGCGGCGGCCATTGTCACATCGCACCTGCTCCACGCCCTGG
ACATCTCGAGCATCTCGACCTTCGCCGTGTTCGTCTGGTTCGCTCTGGCC
ACCGTGGGAGCCGTGCTCTTCTATCACTTCGTCAAGGTTTCGGCTTCGGG
CAAGGGCGTGCTAATCACTGGCTGCGAGGCTCCACTGGCCTGGTACTTGG
CCAAGAAACTGGACGACCTGGGCTTCACCGTTTACGCAGGATTCAACACG
CCCATCGAGGAGTCGGACGAGGCCAAGATTCTCAAGGAGGTGACCTCGGG
GCGCATGAAGCTGCTGCACTTGGACGTCACGTCGGAGAAAACCATCCTGG
AAGCTGCCCGCTATGTGTCGCAGCACTTACCCCACGGCGCCGAAGGATTG
TGGTCTGTGGTGCACTGCGCCCACTGGATAGCTTTGGGTGAACTCGAGTG
GATTCCATTTGCGGTGCTTCGCAAGAGCTTGGACCTCAACCTTTTGGGTT
CCGCTCGGCTAACACAAATCTTCCTGCCCCTGGTTCGCCGTGCCCATGGT
CGCGTCGTTTTCCTGACCTCCGGCCTGAATCGTGTGCCATCTCCCGTCCG
GGGAATCCAGTGTGCCACCCAAGCGGCCGTGGATTGCTTTGCCGCCTGTC
TGCGCCAGGAGATGCGCACCCGGGGAGTGGACGTGTCCGTGGTGGCTGCC
GGTGAATTTGCAC
BO08242.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8888-PA | 1167 | CG8888-RA | 1..847 | 17..863 | 4235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:02:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8888-RA | 1708 | CG8888-RA | 225..1072 | 16..863 | 4240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:02:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12077051..12077299 | 288..40 | 1245 | 100 | Minus |
| 2R | 25286936 | 2R | 12065731..12065947 | 863..647 | 1085 | 100 | Minus |
| 2R | 25286936 | 2R | 12066494..12066702 | 493..285 | 1045 | 100 | Minus |
| 2R | 25286936 | 2R | 12066006..12066161 | 649..494 | 780 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:02:49 has no hits.
BO08242.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:55 Download gff for
BO08242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8888-PA | 1..847 | 17..863 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:34:00 Download gff for
BO08242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8888-PA | 1..847 | 17..863 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 16:00:07 Download gff for
BO08242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8888-RA | 218..1072 | 9..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:42:49 Download gff for
BO08242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8888-RA | 218..1072 | 9..863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:42:49 Download gff for
BO08242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12066008..12066161 | 494..647 | 100 | <- | Minus |
| 2R | 12066494..12066700 | 287..493 | 100 | <- | Minus |
| 2R | 12077053..12077298 | 41..286 | 100 | <- | Minus |
| 2R | 12065731..12065946 | 648..863 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 16:00:07 Download gff for
BO08242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7953236..7953451 | 648..863 | 100 | <- | Minus |
| arm_2R | 7953513..7953666 | 494..647 | 100 | <- | Minus |
| arm_2R | 7953999..7954205 | 287..493 | 100 | <- | Minus |
| arm_2R | 7964558..7964803 | 41..286 | 100 | <- | Minus |
BO08242.complete Sequence
1198 bp (1198 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631115
> BO08242.complete
GAAGTTATCAGTCGACATGCAGGTCTTCGATAACAATATGCGCCGTGCCT
CGCGACGCGCCTCCTTGCGACGAGGATCCATATCGGCACTGCCGCAGAAG
TCGCACGAGATTCCCTGGGACATATTCGAGCGACTATTCATGCCCTTCCT
GTTCTGCCAGGCGGCGGCCATTGTCACATCGCACCTGCTCCACGCCCTGG
ACATCTCGAGCATCTCGACCTTCGCCGTGTTCGTCTGGTTCGCTCTGGCC
ACCGTGGGAGCCGTGCTCTTCTATCACTTCGTCAAGGTTTCGGCTTCGGG
CAAGGGCGTGCTAATCACTGGCTGCGAGGCTCCACTGGCCTGGTACTTGG
CCAAGAAACTGGACGACCTGGGCTTCACCGTTTACGCAGGATTCAACACG
CCCATCGAGGAGTCGGACGAGGCCAAGATTCTCAAGGAGGTGACCTCGGG
GCGCATGAAGCTGCTGCACTTGGACGTCACGTCGGAGAAAACCATCCTGG
AAGCTGCCCGCTATGTGTCGCAGCACTTACCCCACGGCGCCGAAGGATTG
TGGTCTGTGGTGCACTGCGCCCACTGGATAGCTTTGGGTGAACTCGAGTG
GATTCCATTTGCGGTGCTTCGCAAGAGCTTGGACCTCAACCTTTTGGGTT
CCGCTCGGCTAACACAAATCTTCCTGCCCCTGGTTCGCCGTGCCCATGGT
CGCGTCGTTTTCCTGACCTCCGGCCTGAATCGTGTGCCATCTCCCGTCCG
GGGAATCCAGTGTGCCACCCAAGCGGCCGTGGATTGCTTTGCCGCCTGTC
TGCGCCAGGAGATGCGCACCCGGGGAGTGGACGTGTCCGTGGTGGCTGCC
GGTGAATTTGCACCCGGCAACGGCTGGCTGAACGAGACCGAGCTGCGTGA
CCAGGCCAAGCAAATGTGGAACCAGCTTTCCTCGGAGCAGAAGAAGACCT
ACGGCGAGGATTACTACGAGGCGGCCATGACATCGGTGGAGAAGTATTCG
CGCCAGGCGGCCGATATCCAGCCCACGCTGCGCGTCCTCATCGATGCCGT
GACCAGGACCTTCCCCATGGCCCGCTACACCCCAGTGACATCCAGCGAGC
GACTGCAGATCTTCCTAGCCGAACACCTGGCCCCCTCTCTCTACGAATCG
CTGTACGGGGAGCAGAAGAAGTTCGTCTACGCAAGCTTTCTAGACCAT
BO08242.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:34:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8888-RA | 1167 | CG8888-PA | 1..1164 | 17..1180 | 5820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:34:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8888-RA | 1708 | CG8888-RA | 225..1389 | 16..1180 | 5825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:34:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12065689..12065947 | 905..647 | 1295 | 100 | Minus |
| 2R | 25286936 | 2R | 12077051..12077299 | 288..40 | 1245 | 100 | Minus |
| 2R | 25286936 | 2R | 12066494..12066702 | 493..285 | 1045 | 100 | Minus |
| 2R | 25286936 | 2R | 12064884..12065061 | 1180..1003 | 890 | 100 | Minus |
| 2R | 25286936 | 2R | 12066006..12066161 | 649..494 | 780 | 100 | Minus |
| 2R | 25286936 | 2R | 12065128..12065233 | 1007..902 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:34:05 has no hits.
BO08242.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:08 Download gff for
BO08242.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8888-RA | 1..1167 | 17..1183 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:56:48 Download gff for
BO08242.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8888-RA | 224..1387 | 17..1182 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:48 Download gff for
BO08242.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8888-RA | 226..1389 | 17..1182 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:08 Download gff for
BO08242.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8888-RA | 216..1397 | 9..1187 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:40 Download gff for
BO08242.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8888-RA | 226..1389 | 17..1182 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:40 Download gff for
BO08242.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12064880..12065057 | 1007..1182 | 98 | <- | Minus |
| 2R | 12065129..12065230 | 905..1006 | 100 | <- | Minus |
| 2R | 12065690..12065946 | 648..904 | 100 | <- | Minus |
| 2R | 12066008..12066161 | 494..647 | 100 | <- | Minus |
| 2R | 12066494..12066700 | 287..493 | 100 | <- | Minus |
| 2R | 12077053..12077298 | 41..286 | 100 | <- | Minus |
| 2R | 12079295..12079318 | 17..40 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:48 Download gff for
BO08242.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7952385..7952562 | 1007..1182 | 98 | <- | Minus |
| arm_2R | 7952634..7952735 | 905..1006 | 100 | <- | Minus |
| arm_2R | 7953195..7953451 | 648..904 | 100 | <- | Minus |
| arm_2R | 7953513..7953666 | 494..647 | 100 | <- | Minus |
| arm_2R | 7953999..7954205 | 287..493 | 100 | <- | Minus |
| arm_2R | 7964558..7964803 | 41..286 | 100 | <- | Minus |
| arm_2R | 7966800..7966823 | 17..40 | 100 | | Minus |
BO08242.pep Sequence
Translation from 16 to 1198
> BO08242.pep
MQVFDNNMRRASRRASLRRGSISALPQKSHEIPWDIFERLFMPFLFCQAA
AIVTSHLLHALDISSISTFAVFVWFALATVGAVLFYHFVKVSASGKGVLI
TGCEAPLAWYLAKKLDDLGFTVYAGFNTPIEESDEAKILKEVTSGRMKLL
HLDVTSEKTILEAARYVSQHLPHGAEGLWSVVHCAHWIALGELEWIPFAV
LRKSLDLNLLGSARLTQIFLPLVRRAHGRVVFLTSGLNRVPSPVRGIQCA
TQAAVDCFAACLRQEMRTRGVDVSVVAAGEFAPGNGWLNETELRDQAKQM
WNQLSSEQKKTYGEDYYEAAMTSVEKYSRQAADIQPTLRVLIDAVTRTFP
MARYTPVTSSERLQIFLAEHLAPSLYESLYGEQKKFVYASFLDH
BO08242.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:19:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8888-PA | 388 | CG8888-PA | 1..388 | 1..388 | 1999 | 100 | Plus |
| sro-PA | 335 | CG12068-PA | 29..305 | 98..380 | 195 | 27.6 | Plus |
| CG13377-PB | 330 | CG13377-PB | 11..236 | 69..273 | 155 | 28.4 | Plus |
| CG13377-PA | 330 | CG13377-PA | 11..236 | 69..273 | 155 | 28.4 | Plus |
