Clone Sequence Records
BO08243.3prime Sequence
932 bp (802 high quality bases) assembled on 2006-01-06
> BO08243.3prime
ATGGTCTAGAAAGCTTGCGTTGGCGAACGAAGTGAGCGAATCACGTCCTT
TAACTTCGCGATCCGGAAAAAACATGTCGGAGTTTGGATCGTTCTCATCG
ACCAGCTGTCGCATCATCCAGAGCCGCTCATCCTCGCTCTCCTTCGATTT
GTTATGAGTCTTGGATGCCTGGAAGCCGAGAAAGGATTCCGGTTCCATGC
TGACATATCTGCTGACCGGTGGCGATAGCGACCATCGATTTTCCCCATAT
TTCTGCTCGAGCTCATCCTCGTTCTCCTTCTCATCCACTATTAAGTGGGT
GCCCAAGTGTGCCCGTTGCAGAGGCATGATCGGTACAACCGCCTCAAAGG
ACATCAGTTCGCAGAAGATGGCTTGCTCCACGGTTCCGAACGAGGAGAGC
ACATGGTCGATGTAGTTGCGCTCCAATCCCCTGTAGACCTGCGGCCACGT
GGGTATCGATAGGATGCTCCACAGCTGCAGGGCCACGCGACTCAATGGAC
CGCTGCGGGTCTTCTGCAGGTGGTCAATGATTTCCAGCATCATGAAGTCC
TGCCTATAATTATCCATTATCTTCCCCTGCTCACACTGCATCGGCGAGAA
GGGAGAATCCACCGATAACTGGGCCGCACCCCATAGATACGGCAAAAAGT
AGTAGTCTTCGATGGTGCACGCCGGATCCTTGGCAATGGTCAGTCCATAG
GTGCTTATCAGGCGCCTAACCACATTCACATAGCGATTGAAGAGCATCAG
TGCAGCGGCCACCGTATCCTTGGCCAACAGGATACCGGCGCGAAATAGGC
CGCAGAGAAAGAAAAGGAACATCAACTCGTTGGCTGGACCAAATCCAGGG
TGTTCCCATTACAAACGATCGTCGAAGGTATTGTCCCAGTTCGTTGATGT
GCTTGCAGTTCACATTGATGGCCTCGTCCAGT
BO08243.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8509-PA | 1299 | CG8509-RA | 472..1296 | 843..19 | 4125 | 100 | Minus |
| CG8509-PA | 1299 | CG8509-RA | 381..451 | 932..862 | 355 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:13:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8509-RA | 1393 | CG8509-RA | 430..1345 | 932..19 | 4530 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:13:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15809984..15810899 | 932..19 | 4480 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:13:02 has no hits.
BO08243.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:56 Download gff for
BO08243.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8509-PA | 381..1299 | 15..932 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:34:02 Download gff for
BO08243.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8509-PA | 381..1299 | 15..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:48:02 Download gff for
BO08243.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8509-RA | 430..1356 | 7..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:53:24 Download gff for
BO08243.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8509-RA | 430..1356 | 7..932 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:53:24 Download gff for
BO08243.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15809984..15810910 | 7..932 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:48:02 Download gff for
BO08243.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15704017..15704943 | 7..932 | 99 | | Minus |
BO08243.5prime Sequence
885 bp (794 high quality bases) assembled on 2006-01-06
> BO08243.5prime
GAAGTTATCAGTCGACATGAGCAACAAACTGGGCTATGATGTGACCGATC
CCACTGTCCAATTGCTCCGGGCATCGGCGTTCATGCAAAATGGGCCAGTG
AAGCAGGTTCGCAGCCTGGAGGATCTGGACCGCTGGGTTCGCTCGCAGGC
ATATTACGATATCATTGCGTACATCAGCAACACCAGCAAGGCCATCCAGG
GTCATCGTTTGACGCAGACCTTTCCGGTCACGGAGCAGATGCGTCGATTG
AGCGAGATATTCGATGGACTGGATCACCTGATTGTCGAGCATACACCGAA
AATTGAGGACTCGTATCTGGCGTTACCGTTCGGCCAGGTTAGAAGCAAGG
CCTATCGCACTTGGATGCGAGAGATGTACCAGCATGTGTTTAGCAAACTG
GACGAGGCCATCAATGTGAACTGCAAGCACATCAACGAACTGGGACAATA
CCTTCGACGATCGTTTGGTAATGGGAACACCCTGGATTTTGGTCCAGCCA
ACGAGTTGATGTTCCTTTTCTTTCTCTGCGGCCTATTTCGCGCCGGTATC
CTGTTGGCCAAGGATACGGTGGCCGCTGCACTGATGCTCTTCAATCGCTA
TGTGAATGTGGTTAGGCGCCTGATAAGCACCTATGGACTGACCATTGCCA
AGGATCCGGCGTGCACCATCGAAGACTACTACTTTTTGCCGTATCTATGG
GGTGCGGCCCAGTTATCGGTGGATTCTCCCTTCTCGCCGATGCAGTGTGA
GCAGGGGAAGATAATGGATAATTATAGGCAGGACTTCATGATGCTGGAAA
TCATTGACCACCTGCAGAAGACCCGCAGCGGTCCATTGAGTCGCGTGGCC
CTGCAGCTGTGGAGCATCCTATCGATACCCACGTG
BO08243.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8509-PA | 1299 | CG8509-RA | 1..869 | 17..885 | 4345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:07:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8509-RA | 1393 | CG8509-RA | 50..918 | 17..885 | 4345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:07:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15809604..15810472 | 17..885 | 4345 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:07:21 has no hits.
BO08243.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:41:57 Download gff for
BO08243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8509-PA | 1..869 | 17..885 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:34:03 Download gff for
BO08243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8509-PA | 1..869 | 17..885 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:11:23 Download gff for
BO08243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8509-RA | 46..918 | 9..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:26:22 Download gff for
BO08243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8509-RA | 46..918 | 9..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:26:22 Download gff for
BO08243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15809600..15810472 | 9..885 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:11:23 Download gff for
BO08243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15703633..15704505 | 9..885 | 99 | | Plus |
BO08243.complete Sequence
1330 bp assembled on 2007-10-17
GenBank Submission: FJ631116
> BO08243.complete
GAAGTTATCAGTCGACATGAGCAACAAACTGGGCTATGATGTGACCGATC
CCACTGTCCAATTGCTCCGGGCATCGGCGTTCATGCAAAATGGGCCAGTG
AAGCAGGTTCGCAGCCTGGAGGATCTGGACCGCTGGGTTCGCTCGCAGGC
ATATTACGATATCATTGCGTACATCAGCAACACCAGCAAGGCCATCCAGG
GTCATCGTTTGACGCAGACCTTTCCGGTCACGGAGCAGATGCGTCGATTG
AGCGAGATATTCGATGGACTGGATCACCTGATTGTCGAGCATACACCGAA
AATTGAGGACTCGTATCTGGCGTTACCGTTCGGCCAGGTTAGAAGCAAGG
CCTATCGCACTTGGATGCGAGAGATGTACCAGCATGTGTTTAGCAAACTG
GACGAGGCCATCAATGTGAACTGCAAGCACATCAACGAACTGGGACAATA
CCTTCGACGATCGTTTGGTAATGGGAACACCCTGGATTTTGGTCCAGCCA
ACGAGTTGATGTTCCTTTTCTTTCTCTGCGGCCTATTTCGCGCCGGTATC
CTGTTGGCCAAGGATACGGTGGCCGCTGCACTGATGCTCTTCAATCGCTA
TGTGAATGTGGTTAGGCGCCTGATAAGCACCTATGGACTGACCATTGCCA
AGGATCCGGCGTGCACCATCGAAGACTACTACTTTTTGCCGTATCTATGG
GGTGCGGCCCAGTTATCGGTGGATTCTCCCTTCTCGCCGATGCAGTGTGA
GCAGGGGAAGATAATGGATAATTATAGGCAGGACTTCATGATGCTGGAAA
TCATTGACCACCTGCAGAAGACCCGCAGCGGTCCATTGAGTCGCGTGGCC
CTGCAGCTGTGGAGCATCCTATCGATACCCACGTGGCCGCAGGTCTACAG
GGGATTGGAGCGCAACTACATCGACCATGTGCTCTCCTCGTTCGGAACCG
TGGAGCAAGCCATCTTCTGCGAACTGATGTCCTTTGAGGCGGTTGTACCG
ATCATGCCTCTGCAACGGGCACACTTGGGCACCCACTTAATAGTGGATGA
GAAGGAGAACGAGGATGAGCTCGAGCAGAAATATGGGGAAAATCGATGGT
CGCTATCGCCACCGGTCAGCAGATATGTCAGCATGGAACCGGAATCCTTT
CTCGGCTTCCAGGCATCCAAGACTCATAACAAATCGAAGGAGAGCGAGGA
TGAGCGGCTCTGGATGATGCGACAGCTGGTCGATGAGAACGATCCAAACT
CCGACATGTTTTTTCCGGATCGCGAAGTTAAAGGACGTGATTCGCTCACT
TCGTTCGCCAACGCAAGCTTTCTAGACCAT
BO08243.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:49:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8509-RA | 1299 | CG8509-PA | 1..1296 | 17..1312 | 6480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8509-RA | 1393 | CG8509-RA | 50..1345 | 17..1312 | 6480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15809604..15810899 | 17..1312 | 6480 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:49:21 has no hits.
BO08243.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:29 Download gff for
BO08243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8509-RA | 1..1299 | 17..1316 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:05:46 Download gff for
BO08243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8509-RA | 46..1356 | 9..1324 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:35:15 Download gff for
BO08243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8509-RA | 50..1345 | 17..1314 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:47:08 Download gff for
BO08243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8509-RA | 50..1345 | 17..1314 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:10:42 Download gff for
BO08243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8509-RA | 50..1345 | 17..1314 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:10:42 Download gff for
BO08243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15809604..15810899 | 17..1314 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:35:15 Download gff for
BO08243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15703637..15704932 | 17..1314 | 99 | | Plus |
BO08243.pep Sequence
Translation from 16 to 1330
> BO08243.pep
MSNKLGYDVTDPTVQLLRASAFMQNGPVKQVRSLEDLDRWVRSQAYYDII
AYISNTSKAIQGHRLTQTFPVTEQMRRLSEIFDGLDHLIVEHTPKIEDSY
LALPFGQVRSKAYRTWMREMYQHVFSKLDEAINVNCKHINELGQYLRRSF
GNGNTLDFGPANELMFLFFLCGLFRAGILLAKDTVAAALMLFNRYVNVVR
RLISTYGLTIAKDPACTIEDYYFLPYLWGAAQLSVDSPFSPMQCEQGKIM
DNYRQDFMMLEIIDHLQKTRSGPLSRVALQLWSILSIPTWPQVYRGLERN
YIDHVLSSFGTVEQAIFCELMSFEAVVPIMPLQRAHLGTHLIVDEKENED
ELEQKYGENRWSLSPPVSRYVSMEPESFLGFQASKTHNKSKESEDERLWM
MRQLVDENDPNSDMFFPDREVKGRDSLTSFANASFLDH
BO08243.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8509-PA | 432 | CG8509-PA | 1..432 | 1..432 | 2266 | 100 | Plus |
| Ptpa-PA | 398 | CG3289-PA | 17..321 | 29..338 | 577 | 39.7 | Plus |
| CG2104-PB | 424 | CG2104-PB | 11..367 | 18..369 | 555 | 34.2 | Plus |
| CG2104-PA | 424 | CG2104-PA | 11..367 | 18..369 | 555 | 34.2 | Plus |
