Clone BO08246 Report

Search the DGRC for BO08246

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:82
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptTimp-RA
Protein status:BO08246.pep: validated full length
Sequenced Size:664

Clone Sequence Records

BO08246.5prime Sequence

662 bp (661 high quality bases) assembled on 2006-01-06

> BO08246.5prime
GAAGTTATCAGTCGACATGGATCTTAGAAAGCATTTGGGTTTATTGACGC
TCCTCCTGGTCGCCGTTTTCGCGTTTTACGGTCGCCCAGCGGATGCCTGC
AGCTGCATGCCATCTCACCCACAGACGCACTTCGCCCAGGCGGACTACGT
TGTGCAACTGCGAGTCCTTCGCAAATCGGATACCATCGAGCCCGGCAGGA
CCACCTACAAAGTTCACATCAAACGCACCTACAAGGCTACATCCGAAGCA
CGACGAATGCTACGCGATGGGCGCCTGTCCACGCCCCAAGATGACGCAAT
GTGTGGTATAAATCTCGATCTGGGAAAAGTTTATATAGTAGCGGGTAGGA
TGCCGACATTAAATATATGCAGCTACTACAAGGAGTACACCAGGATGACC
ATAACAGAGCGTCATGGCTTCAGCGGTGGATATGCCAAGGCCACCAATTG
CACAGTAACTCCCTGCTTTGGAGAGAGATGCTTTAAGGGACGAAACTATG
CCGATACATGCAAGTGGTCGCCTTTTGGAAAATGCGAGACGAACTACAGT
GCCTGCATGCCGCATAAAGTGCAGACGGTCAATGGAGTGATTTCCCGATG
CCGCTGGCGACGCACGCAGCTCTACAGAAAGTGCATGAGCAATCCGGCAA
GCTTTCTAGACC

BO08246.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG6281-PA 633 Timp-RA 1..630 17..646 3150 100 Plus
CG6281-PB 633 Timp-RB 1..630 17..646 3150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:35:58
Subject Length Description Subject Range Query Range Score Percent Strand
Timp-RB 1591 CG6281-RB 319..949 16..646 3155 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:35:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10204763..10204991 458..230 1130 99.6 Minus
3R 32079331 3R 10204517..10204708 646..455 960 100 Minus
3R 32079331 3R 10205250..10205383 149..16 670 100 Minus
3R 32079331 3R 10205092..10205179 236..149 440 100 Minus
Blast to na_te.dros performed 2015-02-13 00:35:55
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 10062..10090 386..358 109 86.2 Minus

BO08246.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:03 Download gff for BO08246.5prime
Subject Subject Range Query Range Percent Splice Strand
Timp-PA 1..633 17..650 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:34:12 Download gff for BO08246.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6281-PB 1..633 17..650 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:33:50 Download gff for BO08246.5prime
Subject Subject Range Query Range Percent Splice Strand
Timp-RB 315..952 9..650 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:51:17 Download gff for BO08246.5prime
Subject Subject Range Query Range Percent Splice Strand
Timp-RB 315..952 9..650 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:51:17 Download gff for BO08246.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10204767..10204985 236..454 100 <- Minus
3R 10205093..10205178 150..235 100 <- Minus
3R 10205250..10205387 9..149 97   Minus
3R 10204513..10204708 455..650 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:33:50 Download gff for BO08246.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6030235..6030430 455..650 98 <- Minus
arm_3R 6030489..6030707 236..454 100 <- Minus
arm_3R 6030815..6030900 150..235 100 <- Minus
arm_3R 6030972..6031109 9..149 97   Minus

BO08246.3prime Sequence

662 bp (661 high quality bases) assembled on 2006-01-06

> BO08246.3prime
ATGGTCTAGAAAGCTTGCCGGATTGCTCATGCACTTTCTGTAGAGCTGCG
TGCGTCGCCAGCGGCATCGGGAAATCACTCCATTGACCGTCTGCACTTTA
TGCGGCATGCAGGCACTGTAGTTCGTCTCGCATTTTCCAAAAGGCGACCA
CTTGCATGTATCGGCATAGTTTCGTCCCTTAAAGCATCTCTCTCCAAAGC
AGGGAGTTACTGTGCAATTGGTGGCCTTGGCATATCCACCGCTGAAGCCA
TGACGCTCTGTTATGGTCATCCTGGTGTACTCCTTGTAGTAGCTGCATAT
ATTTAATGTCGGCATCCTACCCGCTACTATATAAACTTTTCCCAGATCGA
GATTTATACCACACATTGCGTCATCTTGGGGCGTGGACAGGCGCCCATCG
CGTAGCATTCGTCGTGCTTCGGATGTAGCCTTGTAGGTGCGTTTGATGTG
AACTTTGTAGGTGGTCCTGCCGGGCTCGATGGTATCCGATTTGCGAAGGA
CTCGCAGTTGCACAACGTAGTCCGCCTGGGCGAAGTGCGTCTGTGGGTGA
GATGGCATGCAGCTGCAGGCATCCGCTGGGCGACCGTAAAACGCGAAAAC
GGCGACCAGGAGGAGCGTCAATAAACCCAAATGCTTTCTAAGATCCATGT
CGACTGATAACT

BO08246.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG6281-PA 633 Timp-RA 1..630 648..19 3150 100 Minus
CG6281-PB 633 Timp-RB 1..630 648..19 3150 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:09:53
Subject Length Description Subject Range Query Range Score Percent Strand
Timp-RB 1591 CG6281-RB 319..949 649..19 3155 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:09:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10204763..10204991 207..435 1130 99.6 Plus
3R 32079331 3R 10204517..10204708 19..210 960 100 Plus
3R 32079331 3R 10205250..10205383 516..649 670 100 Plus
3R 32079331 3R 10205092..10205179 429..516 440 100 Plus
Blast to na_te.dros performed 2015-02-11 22:09:51
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 10062..10090 279..307 109 86.2 Plus

BO08246.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:02 Download gff for BO08246.3prime
Subject Subject Range Query Range Percent Splice Strand
Timp-PA 1..633 15..648 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:34:11 Download gff for BO08246.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6281-PB 1..633 15..648 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:47:57 Download gff for BO08246.3prime
Subject Subject Range Query Range Percent Splice Strand
Timp-RB 315..952 15..656 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:49:11 Download gff for BO08246.3prime
Subject Subject Range Query Range Percent Splice Strand
Timp-RB 315..952 15..656 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:49:11 Download gff for BO08246.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10204513..10204708 15..210 98 <- Plus
3R 10204767..10204985 211..429 100 <- Plus
3R 10205093..10205178 430..515 100 <- Plus
3R 10205250..10205387 516..656 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:47:57 Download gff for BO08246.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6030235..6030430 15..210 98 <- Plus
arm_3R 6030489..6030707 211..429 100 <- Plus
arm_3R 6030815..6030900 430..515 100 <- Plus
arm_3R 6030972..6031109 516..656 97   Plus

BO08246.complete Sequence

664 bp (664 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ631118

> BO08246.complete
GAAGTTATCAGTCGACATGGATCTTAGAAAGCATTTGGGTTTATTGACGC
TCCTCCTGGTCGCCGTTTTCGCGTTTTACGGTCGCCCAGCGGATGCCTGC
AGCTGCATGCCATCTCACCCACAGACGCACTTCGCCCAGGCGGACTACGT
TGTGCAACTGCGAGTCCTTCGCAAATCGGATACCATCGAGCCCGGCAGGA
CCACCTACAAAGTTCACATCAAACGCACCTACAAGGCTACATCCGAAGCA
CGACGAATGCTACGCGATGGGCGCCTGTCCACGCCCCAAGATGACGCAAT
GTGTGGTATAAATCTCGATCTGGGAAAAGTTTATATAGTAGCGGGTAGGA
TGCCGACATTAAATATATGCAGCTACTACAAGGAGTACACCAGGATGACC
ATAACAGAGCGTCATGGCTTCAGCGGTGGATATGCCAAGGCCACCAATTG
CACAGTAACTCCCTGCTTTGGAGAGAGATGCTTTAAGGGACGAAACTATG
CCGATACATGCAAGTGGTCGCCTTTTGGAAAATGCGAGACGAACTACAGT
GCCTGCATGCCGCATAAAGTGCAGACGGTCAATGGAGTGATTTCCCGATG
CCGCTGGCGACGCACGCAGCTCTACAGAAAGTGCATGAGCAATCCGGCAA
GCTTTCTAGACCAT

BO08246.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:47:32
Subject Length Description Subject Range Query Range Score Percent Strand
Timp-RB 633 CG6281-PB 1..630 17..646 3150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:47:33
Subject Length Description Subject Range Query Range Score Percent Strand
Timp-RB 1591 CG6281-RB 319..949 16..646 3155 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:47:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10204763..10204991 458..230 1130 99.6 Minus
3R 32079331 3R 10204517..10204708 646..455 960 100 Minus
3R 32079331 3R 10205250..10205383 149..16 670 100 Minus
3R 32079331 3R 10205092..10205179 236..149 440 100 Minus
Blast to na_te.dros performed 2014-11-27 16:47:31
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 10062..10090 386..358 109 86.2 Minus

BO08246.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:55 Download gff for BO08246.complete
Subject Subject Range Query Range Percent Splice Strand
Timp-RB 1..633 17..650 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:31:35 Download gff for BO08246.complete
Subject Subject Range Query Range Percent Splice Strand
Timp-RB 296..933 9..650 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:18 Download gff for BO08246.complete
Subject Subject Range Query Range Percent Splice Strand
Timp-RB 320..949 17..648 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:55 Download gff for BO08246.complete
Subject Subject Range Query Range Percent Splice Strand
Timp-RB 296..933 9..650 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:27:03 Download gff for BO08246.complete
Subject Subject Range Query Range Percent Splice Strand
Timp-RB 320..949 17..648 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:27:03 Download gff for BO08246.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10204515..10204708 455..648 98 <- Minus
3R 10204767..10204985 236..454 100 <- Minus
3R 10205093..10205178 150..235 100 <- Minus
3R 10205250..10205382 17..149 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:18 Download gff for BO08246.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6030237..6030430 455..648 98 <- Minus
arm_3R 6030489..6030707 236..454 100 <- Minus
arm_3R 6030815..6030900 150..235 100 <- Minus
arm_3R 6030972..6031104 17..149 100   Minus

BO08246.pep Sequence

Translation from 16 to 664

> BO08246.pep
MDLRKHLGLLTLLLVAVFAFYGRPADACSCMPSHPQTHFAQADYVVQLRV
LRKSDTIEPGRTTYKVHIKRTYKATSEARRMLRDGRLSTPQDDAMCGINL
DLGKVYIVAGRMPTLNICSYYKEYTRMTITERHGFSGGYAKATNCTVTPC
FGERCFKGRNYADTCKWSPFGKCETNYSACMPHKVQTVNGVISRCRWRRT
QLYRKCMSNPASFLDH

BO08246.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:19:52
Subject Length Description Subject Range Query Range Score Percent Strand
Timp-PB 210 CG6281-PB 1..210 1..210 1150 100 Plus