Clone Sequence Records
BO08246.5prime Sequence
662 bp (661 high quality bases) assembled on 2006-01-06
> BO08246.5prime
GAAGTTATCAGTCGACATGGATCTTAGAAAGCATTTGGGTTTATTGACGC
TCCTCCTGGTCGCCGTTTTCGCGTTTTACGGTCGCCCAGCGGATGCCTGC
AGCTGCATGCCATCTCACCCACAGACGCACTTCGCCCAGGCGGACTACGT
TGTGCAACTGCGAGTCCTTCGCAAATCGGATACCATCGAGCCCGGCAGGA
CCACCTACAAAGTTCACATCAAACGCACCTACAAGGCTACATCCGAAGCA
CGACGAATGCTACGCGATGGGCGCCTGTCCACGCCCCAAGATGACGCAAT
GTGTGGTATAAATCTCGATCTGGGAAAAGTTTATATAGTAGCGGGTAGGA
TGCCGACATTAAATATATGCAGCTACTACAAGGAGTACACCAGGATGACC
ATAACAGAGCGTCATGGCTTCAGCGGTGGATATGCCAAGGCCACCAATTG
CACAGTAACTCCCTGCTTTGGAGAGAGATGCTTTAAGGGACGAAACTATG
CCGATACATGCAAGTGGTCGCCTTTTGGAAAATGCGAGACGAACTACAGT
GCCTGCATGCCGCATAAAGTGCAGACGGTCAATGGAGTGATTTCCCGATG
CCGCTGGCGACGCACGCAGCTCTACAGAAAGTGCATGAGCAATCCGGCAA
GCTTTCTAGACC
BO08246.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6281-PA | 633 | Timp-RA | 1..630 | 17..646 | 3150 | 100 | Plus |
CG6281-PB | 633 | Timp-RB | 1..630 | 17..646 | 3150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:35:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Timp-RB | 1591 | CG6281-RB | 319..949 | 16..646 | 3155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:35:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10204763..10204991 | 458..230 | 1130 | 99.6 | Minus |
3R | 32079331 | 3R | 10204517..10204708 | 646..455 | 960 | 100 | Minus |
3R | 32079331 | 3R | 10205250..10205383 | 149..16 | 670 | 100 | Minus |
3R | 32079331 | 3R | 10205092..10205179 | 236..149 | 440 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 00:35:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 10062..10090 | 386..358 | 109 | 86.2 | Minus |
BO08246.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:03 Download gff for
BO08246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Timp-PA | 1..633 | 17..650 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:34:12 Download gff for
BO08246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6281-PB | 1..633 | 17..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:33:50 Download gff for
BO08246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Timp-RB | 315..952 | 9..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:51:17 Download gff for
BO08246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Timp-RB | 315..952 | 9..650 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:51:17 Download gff for
BO08246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10204767..10204985 | 236..454 | 100 | <- | Minus |
3R | 10205093..10205178 | 150..235 | 100 | <- | Minus |
3R | 10205250..10205387 | 9..149 | 97 | | Minus |
3R | 10204513..10204708 | 455..650 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:33:50 Download gff for
BO08246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6030235..6030430 | 455..650 | 98 | <- | Minus |
arm_3R | 6030489..6030707 | 236..454 | 100 | <- | Minus |
arm_3R | 6030815..6030900 | 150..235 | 100 | <- | Minus |
arm_3R | 6030972..6031109 | 9..149 | 97 | | Minus |
BO08246.3prime Sequence
662 bp (661 high quality bases) assembled on 2006-01-06
> BO08246.3prime
ATGGTCTAGAAAGCTTGCCGGATTGCTCATGCACTTTCTGTAGAGCTGCG
TGCGTCGCCAGCGGCATCGGGAAATCACTCCATTGACCGTCTGCACTTTA
TGCGGCATGCAGGCACTGTAGTTCGTCTCGCATTTTCCAAAAGGCGACCA
CTTGCATGTATCGGCATAGTTTCGTCCCTTAAAGCATCTCTCTCCAAAGC
AGGGAGTTACTGTGCAATTGGTGGCCTTGGCATATCCACCGCTGAAGCCA
TGACGCTCTGTTATGGTCATCCTGGTGTACTCCTTGTAGTAGCTGCATAT
ATTTAATGTCGGCATCCTACCCGCTACTATATAAACTTTTCCCAGATCGA
GATTTATACCACACATTGCGTCATCTTGGGGCGTGGACAGGCGCCCATCG
CGTAGCATTCGTCGTGCTTCGGATGTAGCCTTGTAGGTGCGTTTGATGTG
AACTTTGTAGGTGGTCCTGCCGGGCTCGATGGTATCCGATTTGCGAAGGA
CTCGCAGTTGCACAACGTAGTCCGCCTGGGCGAAGTGCGTCTGTGGGTGA
GATGGCATGCAGCTGCAGGCATCCGCTGGGCGACCGTAAAACGCGAAAAC
GGCGACCAGGAGGAGCGTCAATAAACCCAAATGCTTTCTAAGATCCATGT
CGACTGATAACT
BO08246.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6281-PA | 633 | Timp-RA | 1..630 | 648..19 | 3150 | 100 | Minus |
CG6281-PB | 633 | Timp-RB | 1..630 | 648..19 | 3150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:09:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Timp-RB | 1591 | CG6281-RB | 319..949 | 649..19 | 3155 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:09:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10204763..10204991 | 207..435 | 1130 | 99.6 | Plus |
3R | 32079331 | 3R | 10204517..10204708 | 19..210 | 960 | 100 | Plus |
3R | 32079331 | 3R | 10205250..10205383 | 516..649 | 670 | 100 | Plus |
3R | 32079331 | 3R | 10205092..10205179 | 429..516 | 440 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 22:09:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 10062..10090 | 279..307 | 109 | 86.2 | Plus |
BO08246.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:02 Download gff for
BO08246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Timp-PA | 1..633 | 15..648 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:34:11 Download gff for
BO08246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6281-PB | 1..633 | 15..648 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:47:57 Download gff for
BO08246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Timp-RB | 315..952 | 15..656 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:49:11 Download gff for
BO08246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Timp-RB | 315..952 | 15..656 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:49:11 Download gff for
BO08246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10204513..10204708 | 15..210 | 98 | <- | Plus |
3R | 10204767..10204985 | 211..429 | 100 | <- | Plus |
3R | 10205093..10205178 | 430..515 | 100 | <- | Plus |
3R | 10205250..10205387 | 516..656 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:47:57 Download gff for
BO08246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6030235..6030430 | 15..210 | 98 | <- | Plus |
arm_3R | 6030489..6030707 | 211..429 | 100 | <- | Plus |
arm_3R | 6030815..6030900 | 430..515 | 100 | <- | Plus |
arm_3R | 6030972..6031109 | 516..656 | 97 | | Plus |
BO08246.complete Sequence
664 bp (664 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631118
> BO08246.complete
GAAGTTATCAGTCGACATGGATCTTAGAAAGCATTTGGGTTTATTGACGC
TCCTCCTGGTCGCCGTTTTCGCGTTTTACGGTCGCCCAGCGGATGCCTGC
AGCTGCATGCCATCTCACCCACAGACGCACTTCGCCCAGGCGGACTACGT
TGTGCAACTGCGAGTCCTTCGCAAATCGGATACCATCGAGCCCGGCAGGA
CCACCTACAAAGTTCACATCAAACGCACCTACAAGGCTACATCCGAAGCA
CGACGAATGCTACGCGATGGGCGCCTGTCCACGCCCCAAGATGACGCAAT
GTGTGGTATAAATCTCGATCTGGGAAAAGTTTATATAGTAGCGGGTAGGA
TGCCGACATTAAATATATGCAGCTACTACAAGGAGTACACCAGGATGACC
ATAACAGAGCGTCATGGCTTCAGCGGTGGATATGCCAAGGCCACCAATTG
CACAGTAACTCCCTGCTTTGGAGAGAGATGCTTTAAGGGACGAAACTATG
CCGATACATGCAAGTGGTCGCCTTTTGGAAAATGCGAGACGAACTACAGT
GCCTGCATGCCGCATAAAGTGCAGACGGTCAATGGAGTGATTTCCCGATG
CCGCTGGCGACGCACGCAGCTCTACAGAAAGTGCATGAGCAATCCGGCAA
GCTTTCTAGACCAT
BO08246.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:47:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Timp-RB | 633 | CG6281-PB | 1..630 | 17..646 | 3150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:47:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Timp-RB | 1591 | CG6281-RB | 319..949 | 16..646 | 3155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:47:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10204763..10204991 | 458..230 | 1130 | 99.6 | Minus |
3R | 32079331 | 3R | 10204517..10204708 | 646..455 | 960 | 100 | Minus |
3R | 32079331 | 3R | 10205250..10205383 | 149..16 | 670 | 100 | Minus |
3R | 32079331 | 3R | 10205092..10205179 | 236..149 | 440 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 16:47:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 10062..10090 | 386..358 | 109 | 86.2 | Minus |
BO08246.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:55 Download gff for
BO08246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Timp-RB | 1..633 | 17..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:31:35 Download gff for
BO08246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Timp-RB | 296..933 | 9..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:18 Download gff for
BO08246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Timp-RB | 320..949 | 17..648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:55 Download gff for
BO08246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Timp-RB | 296..933 | 9..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:27:03 Download gff for
BO08246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Timp-RB | 320..949 | 17..648 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:27:03 Download gff for
BO08246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10204515..10204708 | 455..648 | 98 | <- | Minus |
3R | 10204767..10204985 | 236..454 | 100 | <- | Minus |
3R | 10205093..10205178 | 150..235 | 100 | <- | Minus |
3R | 10205250..10205382 | 17..149 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:18 Download gff for
BO08246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6030237..6030430 | 455..648 | 98 | <- | Minus |
arm_3R | 6030489..6030707 | 236..454 | 100 | <- | Minus |
arm_3R | 6030815..6030900 | 150..235 | 100 | <- | Minus |
arm_3R | 6030972..6031104 | 17..149 | 100 | | Minus |
BO08246.pep Sequence
Translation from 16 to 664
> BO08246.pep
MDLRKHLGLLTLLLVAVFAFYGRPADACSCMPSHPQTHFAQADYVVQLRV
LRKSDTIEPGRTTYKVHIKRTYKATSEARRMLRDGRLSTPQDDAMCGINL
DLGKVYIVAGRMPTLNICSYYKEYTRMTITERHGFSGGYAKATNCTVTPC
FGERCFKGRNYADTCKWSPFGKCETNYSACMPHKVQTVNGVISRCRWRRT
QLYRKCMSNPASFLDH
BO08246.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:19:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Timp-PB | 210 | CG6281-PB | 1..210 | 1..210 | 1150 | 100 | Plus |