Clone Sequence Records
BO08247.3prime Sequence
869 bp (795 high quality bases) assembled on 2006-01-06
> BO08247.3prime
ATGGTCTAGAAAGCTTGCGGACATGTTCAGGATGATGGCGCGGGTAAAGT
CCTGCGTGGTCGATTGTCCGCCCAGATCCTTAGTACGCACCTTGCCATCG
TTCAGCACCTTGTTGATGGCATTCTGGATGATCTCGCCGTAGGTGGGCAG
GTTGATGTGGCGCAACAGCTTCACGCCGCAGAGCAGCATGGCAGTGGGAT
TAGCCACGTTCTTGCCCACGGCCTCGGCGAAGGTGTGACGTGCACCCGGC
TCAAAGACGACGGATTCCGAGGAGTAGGAGGCACCAGCAACGACACCAGC
ACCGCCCACGAGACCACTGGCCAGATTGTCCACAATGGCACCATAGAGAT
TGGGGGTGACCATCACGTCGAACTGGTTGGGATTGGAAACCATCTGCATG
GTCGTGTTGTCCACGATCATCTTCTCAAACTGGATGCGCGGATAGAGCCG
GGAAACCTCTTCGCAGGAGCGTAGGAAGAGACCGTCGCCCAACTTCATGA
TATTCGCCTTGTGCACGGCGGTGACCTTCTTGCGCTGATTCTTCGTCGCA
TAGTCGAAGGCGAACTTGGCAATGCGCATGGACTTTTTGGCGGTGATAAT
CTTCAGGCACTCCACAATGCCGGGCACCGACTCGTGCTCCAACGCCGAAT
ACTCGCCCTCCGTCTGCTCGCGAATAATCACCGTGTCGATGTTGGTGTGG
CGGGTCTTGACACCGGGCAAGCTGCGCACATGCACCACATTGGCGTAGAG
GTCCAGGTCGTTGCGAAGCTTCATGTTAAGGGTCTGCAGGTCACCCACAT
TGCTGTAGTCGGGTGTGGCCAAAACGCCCTTAATGCACACTTTGTTTTTC
TGAATGGATGCCACCACAT
BO08247.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6439-PA | 1113 | CG6439-RA | 260..1110 | 869..19 | 4255 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:55:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6439-RB | 1625 | CG6439-RB | 609..1459 | 869..19 | 4255 | 100 | Minus |
| CG6439-RA | 1861 | CG6439-RA | 411..1261 | 869..19 | 4255 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 14:55:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22017340..22017941 | 246..847 | 2935 | 99.2 | Plus |
| 3R | 32079331 | 3R | 22016991..22017219 | 19..247 | 1145 | 100 | Plus |
| 3R | 32079331 | 3R | 22017979..22018020 | 828..869 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 14:55:54 has no hits.
BO08247.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:04 Download gff for
BO08247.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6439-PA | 260..1113 | 18..869 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:34:14 Download gff for
BO08247.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6439-PA | 260..1113 | 18..869 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:14:27 Download gff for
BO08247.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6439-RA | 411..1261 | 19..869 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:35:39 Download gff for
BO08247.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6439-RA | 411..1261 | 19..869 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:35:39 Download gff for
BO08247.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22016991..22017218 | 19..246 | 100 | <- | Plus |
| 3R | 22017341..22017922 | 247..828 | 100 | <- | Plus |
| 3R | 22017980..22018020 | 829..869 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:14:27 Download gff for
BO08247.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17842713..17842940 | 19..246 | 100 | <- | Plus |
| arm_3R | 17843063..17843644 | 247..828 | 100 | <- | Plus |
| arm_3R | 17843702..17843742 | 829..869 | 100 | | Plus |
BO08247.5prime Sequence
893 bp (834 high quality bases) assembled on 2006-01-06
> BO08247.5prime
GAAGTTATCAGTCGACATGTCGATGCTGGCGAGAACAGTTGGACGGACGT
TCATGCAGGCTGCGGCAGCACGTAGTCTGCACACCACGTCGACGCTACGG
GCTACGGATAACTACGGCGCCAACAGGACCACCTGCACACTGATTCCCGG
CGACGGTGTGGGTCCCGAGCTGGTCTACTCCCTCCAGGAGGTCTTCAAGG
CAGCCAGCGTTCCCGTGGACTTCGAGTGCTACTTCCTTTCCGAAATCAAT
CCCGTGCTTAGTGCCAAACTGGAGGATGTGGTGGCATCCATTCAGAAAAA
CAAAGTGTGCATTAAGGGCGTTTTGGCCACACCCGACTACAGCAATGTGG
GTGACCTGCAGACCCTTAACATGAAGCTTCGCAACGACCTGGACCTCTAC
GCCAATGTGGTGCATGTGCGCAGCTTGCCCGGTGTCAAGACCCGCCACAC
CAACATCGACACGGTGATTATTCGCGAGCAGACGGAGGGCGAGTATTCGG
CGTTGGAGCACGAGTCGGTGCCCGGCATTGTGGAGTGCCTGAAGATTATC
ACCGCCAAAAAGTCCATGCGCATTGCCAAGTTCGCCTTCGACTATGCGAC
GAAGAATCAGCGCAAGAAGGTCACCGCCGTGCACAAGGCGAATATCATGA
AGTTGGGCGACGGTCTCTTCCTACGCTCCTGCGAAGAGGTTTCCCGGCTC
TATCCGCGCATCCAGTTTGAGAAGATGATCGTGGACAACACGACCATGCA
GATGGTTTCCAATCCCAACCAGTTCGACGTGATGGTCACCCCCAATCTCT
ATGGTGCCATTGTGGACAATCTGGCCAGTGGTCTCGTGGGCGGTGCTGGT
GTCGTTGCTGGGTGCTCCTACTCCTCGGAATCCGTCGTCTTTG
BO08247.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6439-PA | 1113 | CG6439-RA | 1..845 | 17..861 | 4225 | 100 | Plus |
| CG6439-PA | 1113 | CG6439-RA | 849..877 | 865..893 | 145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:05:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6439-RB | 1625 | CG6439-RB | 350..1226 | 17..893 | 4340 | 99.8 | Plus |
| CG6439-RA | 1861 | CG6439-RA | 152..1028 | 17..893 | 4340 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:05:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22017346..22017941 | 893..298 | 2860 | 98.7 | Minus |
| 3R | 32079331 | 3R | 22017979..22018098 | 317..198 | 600 | 100 | Minus |
| 3R | 32079331 | 3R | 22018619..22018717 | 204..106 | 480 | 99 | Minus |
| 3R | 32079331 | 3R | 22018779..22018829 | 107..57 | 255 | 100 | Minus |
| 3R | 32079331 | 3R | 22018991..22019033 | 59..17 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:05:38 has no hits.
BO08247.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:05 Download gff for
BO08247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6439-PA | 1..877 | 17..893 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:34:15 Download gff for
BO08247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6439-PA | 1..877 | 17..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 16:00:09 Download gff for
BO08247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6439-RA | 144..1028 | 7..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:23:54 Download gff for
BO08247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6439-RA | 144..1028 | 7..893 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:23:54 Download gff for
BO08247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22018624..22018716 | 107..199 | 100 | <- | Minus |
| 3R | 22018780..22018827 | 59..106 | 100 | <- | Minus |
| 3R | 22018992..22019041 | 7..58 | 92 | | Minus |
| 3R | 22017346..22017922 | 317..893 | 99 | <- | Minus |
| 3R | 22017980..22018096 | 200..316 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 16:00:09 Download gff for
BO08247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17843068..17843644 | 317..893 | 99 | <- | Minus |
| arm_3R | 17843702..17843818 | 200..316 | 100 | <- | Minus |
| arm_3R | 17844346..17844438 | 107..199 | 100 | <- | Minus |
| arm_3R | 17844502..17844549 | 59..106 | 100 | <- | Minus |
| arm_3R | 17844714..17844763 | 7..58 | 92 | | Minus |
BO08247.complete Sequence
1144 bp (1144 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631119
> BO08247.complete
GAAGTTATCAGTCGACATGTCGATGCTGGCGAGAACAGTTGGACGGACGT
TCATGCAGGCTGCGGCAGCACGTAGTCTGCACACCACGTCGACGCTACGG
GCTACGGATAACTACGGCGCCAACAGGACCACCTGCACACTGATTCCCGG
CGACGGTGTGGGTCCCGAGCTGGTCTACTCCCTCCAGGAGGTCTTCAAGG
CAGCCAGCGTTCCCGTGGACTTCGAGTGCTACTTCCTTTCCGAAATCAAT
CCCGTGCTTAGTGCCAAACTGGAGGATGTGGTGGCATCCATTCAGAAAAA
CAAAGTGTGCATTAAGGGCGTTTTGGCCACACCCGACTACAGCAATGTGG
GTGACCTGCAGACCCTTAACATGAAGCTTCGCAACGACCTGGACCTCTAC
GCCAATGTGGTGCATGTGCGCAGCTTGCCCGGTGTCAAGACCCGCCACAC
CAACATCGACACGGTGATTATTCGCGAGCAGACGGAGGGCGAGTATTCGG
CGTTGGAGCACGAGTCGGTGCCCGGCATTGTGGAGTGCCTGAAGATTATC
ACCGCCAAAAAGTCCATGCGCATTGCCAAGTTCGCCTTCGACTATGCGAC
GAAGAATCAGCGCAAGAAGGTCACCGCCGTGCACAAGGCGAATATCATGA
AGTTGGGCGACGGTCTCTTCCTACGCTCCTGCGAAGAGGTTTCCCGGCTC
TATCCGCGCATCCAGTTTGAGAAGATGATCGTGGACAACACGACCATGCA
GATGGTTTCCAATCCCAACCAGTTCGACGTGATGGTCACCCCCAATCTCT
ATGGTGCCATTGTGGACAATCTGGCCAGTGGTCTCGTGGGCGGTGCTGGT
GTCGTTGCTGGTGCCTCCTACTCCTCGGAATCCGTCGTCTTTGAGCCGGG
TGCACGTCACACCTTCGCCGAGGCCGTGGGCAAGAACGTGGCTAATCCCA
CTGCCATGCTGCTCTGCGGCGTGAAGCTGTTGCGCCACATCAACCTGCCC
ACCTACGGCGAGATCATCCAGAATGCCATCAACAAGGTGCTGAACGATGG
CAAGGTGCGTACTAAGGATCTGGGCGGACAATCGACCACGCAGGACTTTA
CCCGCGCCATCATCCTGAACATGTCCGCAAGCTTTCTAGACCAT
BO08247.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:01:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6439-RB | 1113 | CG6439-PB | 1..1110 | 17..1126 | 5550 | 100 | Plus |
| CG6439-RA | 1113 | CG6439-PA | 1..1110 | 17..1126 | 5550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:01:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6439-RB | 1625 | CG6439-RB | 350..1459 | 17..1126 | 5550 | 100 | Plus |
| CG6439-RA | 1861 | CG6439-RA | 152..1261 | 17..1126 | 5550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:01:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22017340..22017941 | 899..298 | 2935 | 99.2 | Minus |
| 3R | 32079331 | 3R | 22016991..22017219 | 1126..898 | 1145 | 100 | Minus |
| 3R | 32079331 | 3R | 22017979..22018098 | 317..198 | 600 | 100 | Minus |
| 3R | 32079331 | 3R | 22018619..22018717 | 204..106 | 480 | 99 | Minus |
| 3R | 32079331 | 3R | 22018779..22018829 | 107..57 | 255 | 100 | Minus |
| 3R | 32079331 | 3R | 22018991..22019033 | 59..17 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:01:24 has no hits.
BO08247.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:56 Download gff for
BO08247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6439-RA | 1..1113 | 17..1127 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:31:37 Download gff for
BO08247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6439-RA | 342..1459 | 7..1126 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:26:18 Download gff for
BO08247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6439-RA | 152..1261 | 17..1128 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:56 Download gff for
BO08247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6439-RA | 342..1459 | 7..1126 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:28 Download gff for
BO08247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6439-RA | 152..1261 | 17..1128 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:28 Download gff for
BO08247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22016989..22017218 | 899..1128 | 99 | <- | Minus |
| 3R | 22017341..22017922 | 317..898 | 100 | <- | Minus |
| 3R | 22017980..22018096 | 200..316 | 100 | <- | Minus |
| 3R | 22018624..22018716 | 107..199 | 100 | <- | Minus |
| 3R | 22018780..22018827 | 59..106 | 100 | <- | Minus |
| 3R | 22018992..22019033 | 17..58 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:26:18 Download gff for
BO08247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17842711..17842940 | 899..1128 | 99 | <- | Minus |
| arm_3R | 17843063..17843644 | 317..898 | 100 | <- | Minus |
| arm_3R | 17843702..17843818 | 200..316 | 100 | <- | Minus |
| arm_3R | 17844346..17844438 | 107..199 | 100 | <- | Minus |
| arm_3R | 17844502..17844549 | 59..106 | 100 | <- | Minus |
| arm_3R | 17844714..17844755 | 17..58 | 100 | | Minus |
BO08247.pep Sequence
Translation from 16 to 1144
> BO08247.pep
MSMLARTVGRTFMQAAAARSLHTTSTLRATDNYGANRTTCTLIPGDGVGP
ELVYSLQEVFKAASVPVDFECYFLSEINPVLSAKLEDVVASIQKNKVCIK
GVLATPDYSNVGDLQTLNMKLRNDLDLYANVVHVRSLPGVKTRHTNIDTV
IIREQTEGEYSALEHESVPGIVECLKIITAKKSMRIAKFAFDYATKNQRK
KVTAVHKANIMKLGDGLFLRSCEEVSRLYPRIQFEKMIVDNTTMQMVSNP
NQFDVMVTPNLYGAIVDNLASGLVGGAGVVAGASYSSESVVFEPGARHTF
AEAVGKNVANPTAMLLCGVKLLRHINLPTYGEIIQNAINKVLNDGKVRTK
DLGGQSTTQDFTRAIILNMSASFLDH
BO08247.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:19:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6439-PB | 370 | CG6439-PB | 1..370 | 1..370 | 1874 | 100 | Plus |
| CG6439-PA | 370 | CG6439-PA | 1..370 | 1..370 | 1874 | 100 | Plus |
| CG5028-PC | 392 | CG5028-PC | 35..388 | 22..371 | 795 | 43.9 | Plus |
| CG5028-PD | 393 | CG5028-PD | 35..388 | 22..371 | 795 | 43.9 | Plus |
| CG5028-PB | 402 | CG5028-PB | 35..388 | 22..371 | 795 | 43.9 | Plus |
