Clone Sequence Records
BO08248.3prime Sequence
855 bp (767 high quality bases) assembled on 2006-01-06
> BO08248.3prime
ATGGTCTAGAAAGCTTGCGCCAAGGAAAAGGCCGCCGCCACGGTTAATGG
ATCCTCCAAGGTGAGCGCCACCCAATCCAATTCCGGCACTTCCAGAGTTC
CCGCCGAGATTGCCACCAAGGCTTAGACCATTTCCTCCCAGACTGATACT
TCCCTGGCGATATCCTCCTTGGCTGGCAGATCCGCTCGATCCCAAGGAGG
CAGTGCTACCACCGAGAGAGAGACTTCCCGAACCCACAGCAGGGGTCAGT
ATACCACTGGCGACTCCATGGGCCAGAGACGCAGCCTCGTGGGCACCGGC
TAGTCCAATCGATCCAGCTGTGTTAGAGTTGTGTCCGTTTGCTCCTATTG
ACAGGCCATTTGTTCCAAGTGAAGCAGATCCTGAATTTCCAGAGGTTCCG
ATACTCAAATGTCCGGCGTTGATCTTGGATGATCCGGCGCCAGAGCCAGT
AGATCCAGAGATTCCAACTGATCCGATGCTCAAGTGACCAGATGATCCAG
TGCCAGAGGATCCCTTAGAAGCGGAATCAGTTGATCCAATGCTCAGATGT
CCGACACCAATAGATGCAGCTTGAGAGGAACCGGTACTTCCAGCAGATTG
GATATTTAGATGACCAGCTTCGATGGAGGCAGAACCTGATCCGGTGTGCA
GGGAACTAGATCCCGATGACTCAACTTTCTTGTGCTCTGTCTTGATGTGG
GCAGATCCAGTGTGTGATCCAGAGGCTCCAGAACCAGCAGATCCTGAGAT
TCCAGCTGATCCGATGCTCAAGTGGCCAGATGAACCGAGGGCAGAGGATC
CCTTAGAGGCGGAATCAGTTGCTCCAATGTTCAGGTGTCCTACACCAATA
GATGC
BO08248.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7300-PB | 2661 | CG7300-RB | 1822..2658 | 855..19 | 4185 | 100 | Minus |
| CG7300-PA | 1113 | CG7300-RA | 274..1110 | 855..19 | 4185 | 100 | Minus |
| CG7300-PB | 2661 | CG7300-RB | 1647..1718 | 730..659 | 210 | 91.6 | Minus |
| CG7300-PA | 1113 | CG7300-RA | 99..170 | 730..659 | 210 | 91.6 | Minus |
| CG7300-PB | 2661 | CG7300-RB | 1727..1802 | 650..575 | 155 | 88.1 | Minus |
| CG7300-PA | 1113 | CG7300-RA | 179..254 | 650..575 | 155 | 88.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:05:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7300-RD | 3044 | CG7300-RD | 1841..2677 | 855..19 | 4185 | 100 | Minus |
| CG7300-RB | 2835 | CG7300-RB | 1841..2677 | 855..19 | 4185 | 100 | Minus |
| CG7300-RD | 3044 | CG7300-RD | 1666..1972 | 730..436 | 790 | 84.4 | Minus |
| CG7300-RB | 2835 | CG7300-RB | 1666..1972 | 730..436 | 790 | 84.4 | Minus |
| CG7300-RD | 3044 | CG7300-RD | 2129..2260 | 855..724 | 420 | 88.7 | Minus |
| CG7300-RB | 2835 | CG7300-RB | 2129..2260 | 855..724 | 420 | 88.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:04:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10695367..10696203 | 19..855 | 4185 | 100 | Plus |
| 2L | 23513712 | 2L | 10696072..10696378 | 436..730 | 765 | 84 | Plus |
| 2L | 23513712 | 2L | 10695784..10695915 | 724..855 | 420 | 87.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:05:03 has no hits.
BO08248.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:06 Download gff for
BO08248.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7300-PB | 1822..2661 | 15..855 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:34:16 Download gff for
BO08248.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7300-PA | 274..1113 | 15..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:46:24 Download gff for
BO08248.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7300-RB | 1822..2664 | 10..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:28:49 Download gff for
BO08248.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7300-RB | 1841..2683 | 10..855 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:28:49 Download gff for
BO08248.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10695360..10696203 | 10..855 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:46:24 Download gff for
BO08248.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10695360..10696203 | 10..855 | 99 | | Plus |
BO08248.5prime Sequence
801 bp (777 high quality bases) assembled on 2006-01-06
> BO08248.5prime
GAAGTTATCAGTCGACATGGTCTCTTCTGGGCATTCATCCACTTATTCCT
CAAAAACCGAATCATCCAAATTCAGTGCTGGTCAATCCCACATTAGTTCT
GGATCCGCAACCATTGGAGCCTCTGGAACGCACGCTGCATCTGCCCACAT
CAAGACAGAAAACAAGAAAGTTGAGTCATCGGGATCAAGCTCTATGCACG
CCGGATCAGGTTCTGCTTCCATCGGTGCTGGTCATCTGAATGTCCAATCT
GCCGGAACTACCGGATCCTCCGAAGCTGCTTCAAACCACGCATCTATTGG
TGTAGGACACCTGAACATTGGAGCAACTGATTCCGCCTCTAAGGGATCCT
CTGCCCTCGGTTCATCTGGCCACTTGAGCATCGGATCAGCTGGAATCTCA
GGATCTGCTGGTTCTGGAGCCTCTGGATCACACACTGGATCTGCCCACAT
CAAGACAGAGCACAAGAAAGTTGAGTCATCGGGATCTAGTTCCCTGCACA
CCGGATCAGGTTCTGCCTCCATCGAAGCTGGTCATCTAAATATCCAATCT
GCTGGAAGTACCGGTTCCTCTCAAGCTGCATCTATTGGTGTCGGACATCT
GAGCATTGGATCAACTGATTCCGCTTCTAAGGGATCCTCTGGCACTGGAT
CATCTGGTCACTTGAGCATCGGATCAGTTGGAATCTCTGGATCTACTGGC
TCTGGCGCCGGATCATCCAAGATCAACGCCGGACATTTGAGTATCGGAAC
CTCTGGAAATTCANGATCTGCTTCACTTGGAACAAATGGCCTGTCAATAG
G
BO08248.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7300-PB | 2661 | CG7300-RB | 1549..2333 | 17..801 | 3906 | 99.8 | Plus |
| CG7300-PA | 1113 | CG7300-RA | 1..785 | 17..801 | 3906 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:18:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7300-RD | 3044 | CG7300-RD | 1568..2352 | 17..801 | 3914 | 99.9 | Plus |
| CG7300-RB | 2835 | CG7300-RB | 1568..2352 | 17..801 | 3914 | 99.9 | Plus |
| CG7300-RD | 3044 | CG7300-RD | 1666..1972 | 415..709 | 790 | 84.4 | Plus |
| CG7300-RD | 3044 | CG7300-RD | 1966..2260 | 115..421 | 790 | 84.4 | Plus |
| CG7300-RB | 2835 | CG7300-RB | 1666..1972 | 415..709 | 790 | 84.4 | Plus |
| CG7300-RB | 2835 | CG7300-RB | 1966..2260 | 115..421 | 790 | 84.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:18:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10695692..10696476 | 801..17 | 3914 | 99.9 | Minus |
| 2L | 23513712 | 2L | 10695784..10696078 | 421..115 | 765 | 84 | Minus |
| 2L | 23513712 | 2L | 10696072..10696378 | 709..415 | 765 | 84 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:18:30 has no hits.
BO08248.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:06 Download gff for
BO08248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7300-PB | 1541..2333 | 10..801 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:34:18 Download gff for
BO08248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7300-PA | 1..785 | 17..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:58:31 Download gff for
BO08248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7300-RB | 1541..2333 | 10..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:42:15 Download gff for
BO08248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7300-RB | 1560..2352 | 10..801 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:42:15 Download gff for
BO08248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10695692..10696484 | 10..801 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:58:31 Download gff for
BO08248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10695692..10696484 | 10..801 | 99 | | Minus |
BO08248.complete Sequence
1144 bp (1144 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631120
> BO08248.complete
GAAGTTATCAGTCGACATGGTCTCTTCTGGGCATTCATCCACTTATTCCT
CAAAAACCGAATCATCCAAATTCAGTGCTGGTCAATCCCACATTAGTTCT
GGATCCGCAACCATTGGAGCCTCTGGAACGCACGCTGCATCTGCCCACAT
CAAGACAGAAAACAAGAAAGTTGAGTCATCGGGATCAAGCTCTATGCACG
CCGGATCAGGTTCTGCTTCCATCGGTGCTGGTCATCTGAATGTCCAATCT
GCCGGAACTACCGGATCCTCCGAAGCTGCTTCAAACCACGCATCTATTGG
TGTAGGACACCTGAACATTGGAGCAACTGATTCCGCCTCTAAGGGATCCT
CTGCCCTCGGTTCATCTGGCCACTTGAGCATCGGATCAGCTGGAATCTCA
GGATCTGCTGGTTCTGGAGCCTCTGGATCACACACTGGATCTGCCCACAT
CAAGACAGAGCACAAGAAAGTTGAGTCATCGGGATCTAGTTCCCTGCACA
CCGGATCAGGTTCTGCCTCCATCGAAGCTGGTCATCTAAATATCCAATCT
GCTGGAAGTACCGGTTCCTCTCAAGCTGCATCTATTGGTGTCGGACATCT
GAGCATTGGATCAACTGATTCCGCTTCTAAGGGATCCTCTGGCACTGGAT
CATCTGGTCACTTGAGCATCGGATCAGTTGGAATCTCTGGATCTACTGGC
TCTGGCGCCGGATCATCCAAGATCAACGCCGGACATTTGAGTATCGGAAC
CTCTGGAAATTCAGGATCTGCTTCACTTGGAACAAATGGCCTGTCAATAG
GAGCAAACGGACACAACTCTAACACAGCTGGATCGATTGGACTAGCCGGT
GCCCACGAGGCTGCGTCTCTGGCCCATGGAGTCGCCAGTGGTATACTGAC
CCCTGCTGTGGGTTCGGGAAGTCTCTCTCTCGGTGGTAGCACTGCCTCCT
TGGGATCGAGCGGATCTGCCAGCCAAGGAGGATATCGCCAGGGAAGTATC
AGTCTGGGAGGAAATGGTCTAAGCCTTGGTGGCAATCTCGGCGGGAACTC
TGGAAGTGCCGGAATTGGATTGGGTGGCGCTCACCTTGGAGGATCCATTA
ACCGTGGCGGCGGCCTTTTCCTTGGCGCAAGCTTTCTAGACCAT
BO08248.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:26:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7300-RD | 2661 | CG7300-PD | 1549..2658 | 17..1126 | 5550 | 100 | Plus |
| CG7300-RB | 2661 | CG7300-PB | 1549..2658 | 17..1126 | 5550 | 100 | Plus |
| CG7300-RD | 2661 | CG7300-PD | 1647..1953 | 415..709 | 765 | 84 | Plus |
| CG7300-RD | 2661 | CG7300-PD | 1947..2241 | 115..421 | 765 | 84 | Plus |
| CG7300-RB | 2661 | CG7300-PB | 1647..1953 | 415..709 | 765 | 84 | Plus |
| CG7300-RB | 2661 | CG7300-PB | 1947..2241 | 115..421 | 765 | 84 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:26:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7300-RD | 3044 | CG7300-RD | 1568..2677 | 17..1126 | 5550 | 100 | Plus |
| CG7300-RB | 2835 | CG7300-RB | 1568..2677 | 17..1126 | 5550 | 100 | Plus |
| CG7300-RD | 3044 | CG7300-RD | 1666..1972 | 415..709 | 765 | 84 | Plus |
| CG7300-RD | 3044 | CG7300-RD | 1966..2260 | 115..421 | 765 | 84 | Plus |
| CG7300-RB | 2835 | CG7300-RB | 1666..1972 | 415..709 | 765 | 84 | Plus |
| CG7300-RB | 2835 | CG7300-RB | 1966..2260 | 115..421 | 765 | 84 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:26:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10695367..10696476 | 1126..17 | 5550 | 100 | Minus |
| 2L | 23513712 | 2L | 10695784..10696078 | 421..115 | 765 | 84 | Minus |
| 2L | 23513712 | 2L | 10696072..10696378 | 709..415 | 765 | 84 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:26:13 has no hits.
BO08248.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:57 Download gff for
BO08248.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7300-RA | 1..1113 | 17..1130 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:31:38 Download gff for
BO08248.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7300-RA | 766..1889 | 10..1135 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:58:56 Download gff for
BO08248.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7300-RB | 1549..2658 | 17..1128 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:57 Download gff for
BO08248.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7300-RA | 766..1889 | 10..1135 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:18:41 Download gff for
BO08248.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7300-RB | 1568..2677 | 17..1128 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:18:41 Download gff for
BO08248.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10695365..10696476 | 17..1128 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:58:56 Download gff for
BO08248.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10695365..10696476 | 17..1128 | 99 | | Minus |
BO08248.pep Sequence
Translation from 16 to 1144
> BO08248.pep
MVSSGHSSTYSSKTESSKFSAGQSHISSGSATIGASGTHAASAHIKTENK
KVESSGSSSMHAGSGSASIGAGHLNVQSAGTTGSSEAASNHASIGVGHLN
IGATDSASKGSSALGSSGHLSIGSAGISGSAGSGASGSHTGSAHIKTEHK
KVESSGSSSLHTGSGSASIEAGHLNIQSAGSTGSSQAASIGVGHLSIGST
DSASKGSSGTGSSGHLSIGSVGISGSTGSGAGSSKINAGHLSIGTSGNSG
SASLGTNGLSIGANGHNSNTAGSIGLAGAHEAASLAHGVASGILTPAVGS
GSLSLGGSTASLGSSGSASQGGYRQGSISLGGNGLSLGGNLGGNSGSAGI
GLGGAHLGGSINRGGGLFLGASFLDH
BO08248.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:44:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7300-PD | 886 | CG7300-PD | 517..886 | 1..370 | 1828 | 100 | Plus |
| CG7300-PB | 886 | CG7300-PB | 517..886 | 1..370 | 1828 | 100 | Plus |
| CG7300-PD | 886 | CG7300-PD | 429..747 | 3..371 | 432 | 38.5 | Plus |
| CG7300-PB | 886 | CG7300-PB | 429..747 | 3..371 | 432 | 38.5 | Plus |
| CG7300-PD | 886 | CG7300-PD | 248..659 | 1..360 | 321 | 28.5 | Plus |
| CG7300-PB | 886 | CG7300-PB | 248..659 | 1..360 | 321 | 28.5 | Plus |
| CG7300-PD | 886 | CG7300-PD | 164..492 | 21..349 | 294 | 30.2 | Plus |
| CG7300-PB | 886 | CG7300-PB | 164..492 | 21..349 | 294 | 30.2 | Plus |
| CG7300-PD | 886 | CG7300-PD | 54..470 | 15..364 | 266 | 28.8 | Plus |
| CG7300-PB | 886 | CG7300-PB | 54..470 | 15..364 | 266 | 28.8 | Plus |
| sbb-PE | 929 | CG5580-PE | 383..756 | 4..351 | 252 | 28.2 | Plus |
| sbb-PC | 929 | CG5580-PC | 383..756 | 4..351 | 252 | 28.2 | Plus |
| sbb-PF | 939 | CG5580-PF | 393..766 | 4..351 | 252 | 28.2 | Plus |
| sbb-PE | 929 | CG5580-PE | 251..596 | 1..363 | 247 | 29.4 | Plus |
| sbb-PC | 929 | CG5580-PC | 251..596 | 1..363 | 247 | 29.4 | Plus |
| sbb-PE | 929 | CG5580-PE | 173..593 | 11..372 | 246 | 25.2 | Plus |
| sbb-PC | 929 | CG5580-PC | 173..593 | 11..372 | 246 | 25.2 | Plus |
| CG7300-PD | 886 | CG7300-PD | 38..343 | 63..360 | 226 | 27.8 | Plus |
| CG7300-PB | 886 | CG7300-PB | 38..343 | 63..360 | 226 | 27.8 | Plus |
| sbb-PE | 929 | CG5580-PE | 152..446 | 30..354 | 225 | 28 | Plus |
| sbb-PC | 929 | CG5580-PC | 152..446 | 30..354 | 225 | 28 | Plus |
| CG7300-PD | 886 | CG7300-PD | 29..278 | 92..360 | 185 | 27.6 | Plus |
| CG7300-PB | 886 | CG7300-PB | 29..278 | 92..360 | 185 | 27.6 | Plus |
| sbb-PE | 929 | CG5580-PE | 525..817 | 3..295 | 164 | 26.8 | Plus |
| sbb-PC | 929 | CG5580-PC | 525..817 | 3..295 | 164 | 26.8 | Plus |
