Clone BO08249 Report

Search the DGRC for BO08249

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:82
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptNmda1-RF
Protein status:BO08249.pep: validated full length
Sequenced Size:982

Clone Sequence Records

BO08249.3prime Sequence

965 bp (838 high quality bases) assembled on 2006-01-06

> BO08249.3prime
ATGGTCTAGAAAGCTTGCGTCGCGCGATGCGCCGATTATAGTCAGAATGT
ACATGAAGATATTGATGATGTCCAGGTAGAGGTTTAGTGCCGCAAAGATG
TACTCCTCGGGACTGATAGAGTATTTGTGCTCGCCGCCCATCATTAACTG
TGTGTCGTAGATGAGATAAACGGAGAAGAGCAGCGCTCCAATCGAGGCGT
ACACCAGTGTTATGATCTTTCCCTTTACAAAGATGGCCACGATGCCGAAG
ATCAGGAACACCACCATGCAGGCGATCAAAATACCGCCCATCATAGTAAA
GTCGTACTTTGTCTGCAAGGCGAAGATCGTTAGGGCCAAGCAAACCGCTG
CTGTTATGCCCACCGCCATGAGAACCTCTTTCGGAGCATATTTGGTTGCG
GAAACTCCCATTAAGAACGACTGAGCTGCTGTAAACAGACCCAAGAATAT
GAAGTTCGTCGGTGTTTGGCGGCGCACACTTTCGCAGCAAGCCATAGACA
GCATGGTTACTAACATTACGCCGAGGGCAACCCAAAAGAGCCACATGTTA
TTCCTGGCAAAGGTTTTAGTGCCCTCGTGGTATACAAACAGGGCAACAGC
TCCAAAAGTGACGATTAGTTGTCCCATTAGAATCAGGTACACCTTACGTA
TGAATCCGCGACGGATGCTTTGGTCGTCAAACGAGAAGTTCTTGGGCTGG
CTCTCCGGATCATCGTAGGCTCCGTAGCCGCCAGCAGATGGTGGTGGTTG
GATAAATCCCGGCTGGGGAGCATAACCTCCCGGTGGAGGCCCCTGTCCGT
AGGGCTGTGGATAGGGTTGAGCACCTCCTTGTGCATAGGGTGGGTAGCCT
TGCGGCGGTCCTTGAGGTGGATAGCCGCCCTGAGGTGGATATCCACCATA
TCCTCCCTGCGGGGGATTACCGCCGCCATAGTTGTACTGCTGGTTGGGAT
CTGCGAAATAAAACA

BO08249.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG3798-PF 951 Nmda1-RF 6..948 961..19 4715 100 Minus
CG3798-PB 942 Nmda1-RB 6..939 952..19 4670 100 Minus
CG3798-PD 975 Nmda1-RD 39..972 952..19 4670 100 Minus
CG3798-PA 942 Nmda1-RA 6..939 952..19 4670 100 Minus
CG3798-PC 975 Nmda1-RC 39..972 952..19 4670 100 Minus
CG3798-PE 975 Nmda1-RE 39..972 952..19 4670 100 Minus
CG3814-PB 735 CG3814-RB 628..710 123..41 165 87.9 Minus
CG3814-PA 720 CG3814-RA 649..695 87..41 135 91.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:41:52
Subject Length Description Subject Range Query Range Score Percent Strand
Nmda1-RI 1592 CG3798-RI 82..1028 965..19 4720 99.9 Minus
Nmda1-RF 2118 CG3798-RF 608..1554 965..19 4720 99.9 Minus
Nmda1-RH 1634 CG3798-RH 137..1070 952..19 4670 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:41:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12877658..12878016 19..377 1795 100 Plus
2R 25286936 2R 12878384..12878725 624..965 1695 99.7 Plus
2R 25286936 2R 12878071..12878322 374..625 1260 100 Plus
2R 25286936 2R 12875289..12875635 32..378 415 74.6 Plus
3R 32079331 3R 14152992..14153129 46..183 240 78.3 Plus
Blast to na_te.dros performed on 2015-02-13 05:41:51 has no hits.

BO08249.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:07 Download gff for BO08249.3prime
Subject Subject Range Query Range Percent Splice Strand
Nmda1-PF 3..951 15..964 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:34:19 Download gff for BO08249.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3798-PF 3..951 15..964 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:06:41 Download gff for BO08249.3prime
Subject Subject Range Query Range Percent Splice Strand
Nmda1-RF 609..1560 11..964 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:58:42 Download gff for BO08249.3prime
Subject Subject Range Query Range Percent Splice Strand
Nmda1-RF 609..1560 11..964 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:58:42 Download gff for BO08249.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12878073..12878321 376..624 100 <- Plus
2R 12878385..12878724 625..964 99   Plus
2R 12877652..12878014 11..375 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:06:41 Download gff for BO08249.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8765157..8765519 11..375 99 <- Plus
arm_2R 8765578..8765826 376..624 100 <- Plus
arm_2R 8765890..8766229 625..964 99   Plus

BO08249.5prime Sequence

916 bp (852 high quality bases) assembled on 2006-01-06

> BO08249.5prime
GAAGTTATCAGTCGACATGTCTTATTTCGCAGATCCCAACCAGCAGTACA
ACTATGGCGGCGGTAATCCCCCGCAGGGAGGATATGGTGGATATCCACCT
CAGGGCGGCTATCCACCTCAAGGACCGCCGCAAGGCTACCCACCCTATGC
ACAAGGAGGTGCTCAACCCTATCCACAGCCCTACGGACAGGGGCCTCCAC
CGGGAGGTTATGCTCCCCAGCCGGGATTTATCCAACCACCACCATCTGCT
GGCGGCTACGGAGCCTACGATGATCCGGAGAGCCAGCCCAAGAACTTCTC
GTTTGACGACCAAAGCATCCGTCGCGGATTCATACGTAAGGTGTACCTGA
TTCTAATGGGACAACTAATCGTCACTTTTGGAGCTGTTGCCCTGTTTGTA
TACCACGAGGGCACTAAAACCTTTGCCAGGAATAACATGTGGCTCTTTTG
GGTTGCCCTCGGCGTAATGTTAGTAACCATGCTGTCTATGGCTTGCTGCG
AAAGTGTGCGCCGCCAAACACCGACGAACTTCATATTCTTGGGTCTGTTT
ACAGCAGCTCAGTCGTTCTTAATGGGAGTTTCCGCAACCAAATATGCTCC
GAAAGAGGTTCTCATGGCGGTGGGCATAACAGCAGCGGTTTGCTTGGCCC
TAACGATCTTCGCCTTGCAGACAAAGTACGACTTTACTATGATGGGCGGT
ATTTTGATCGCCTGCATGGTGGTGTTCCTGATCTTCGGCATCGTGGCCAT
CTTTGTAAAGGGAAAGATCATAACACTGGTGTACGCCTCGATTGGAGCGC
TGCTCTTCTCCGTTTATCTCATCTACGACACACAGTTAATGATGGGCGGC
GAGCACAAATACTCTATCAGTCCCGAGGAGTACATCTTTGCGGCACTAAA
CCTCTACCTGGACATC

BO08249.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG3798-PF 951 Nmda1-RF 1..900 17..916 4500 100 Plus
CG3798-PB 942 Nmda1-RB 6..891 31..916 4430 100 Plus
CG3798-PD 975 Nmda1-RD 39..924 31..916 4430 100 Plus
CG3798-PA 942 Nmda1-RA 6..891 31..916 4430 100 Plus
CG3798-PC 975 Nmda1-RC 39..924 31..916 4430 100 Plus
CG3798-PE 975 Nmda1-RE 39..924 31..916 4430 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:13:06
Subject Length Description Subject Range Query Range Score Percent Strand
Nmda1-RI 1592 CG3798-RI 77..980 13..916 4505 99.9 Plus
Nmda1-RF 2118 CG3798-RF 603..1506 13..916 4505 99.9 Plus
Nmda1-RH 1634 CG3798-RH 137..1022 31..916 4430 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:13:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12878384..12878730 359..13 1720 99.7 Minus
2R 25286936 2R 12877706..12878016 916..606 1555 100 Minus
2R 25286936 2R 12878071..12878322 609..358 1260 100 Minus
2R 25286936 2R 12875325..12875635 915..605 325 73.6 Minus
3R 32079331 3R 14153029..14153129 900..800 235 82.2 Minus
Blast to na_te.dros performed on 2015-02-12 10:13:05 has no hits.

BO08249.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:08 Download gff for BO08249.5prime
Subject Subject Range Query Range Percent Splice Strand
Nmda1-PF 1..900 17..916 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:34:21 Download gff for BO08249.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3798-PF 1..900 17..916 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:48:03 Download gff for BO08249.5prime
Subject Subject Range Query Range Percent Splice Strand
Nmda1-RF 603..1506 13..916 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:53:34 Download gff for BO08249.5prime
Subject Subject Range Query Range Percent Splice Strand
Nmda1-RF 603..1506 13..916 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:53:34 Download gff for BO08249.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12877706..12878014 608..916 100 <- Minus
2R 12878073..12878321 359..607 100 <- Minus
2R 12878385..12878730 13..358 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:48:03 Download gff for BO08249.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8765211..8765519 608..916 100 <- Minus
arm_2R 8765578..8765826 359..607 100 <- Minus
arm_2R 8765890..8766235 13..358 99   Minus

BO08249.complete Sequence

982 bp (982 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ631121

> BO08249.complete
GAAGTTATCAGTCGACATGTCTTATTTCGCAGATCCCAACCAGCAGTACA
ACTATGGCGGCGGTAATCCCCCGCAGGGAGGATATGGTGGATATCCACCT
CAGGGCGGCTATCCACCTCAAGGACCGCCGCAAGGCTACCCACCCTATGC
ACAAGGAGGTGCTCAACCCTATCCACAGCCCTACGGACAGGGGCCTCCAC
CGGGAGGTTATGCTCCCCAGCCGGGATTTATCCAACCACCACCATCTGCT
GGCGGCTACGGAGCCTACGATGATCCGGAGAGCCAGCCCAAGAACTTCTC
GTTTGACGACCAAAGCATCCGTCGCGGATTCATACGTAAGGTGTACCTGA
TTCTAATGGGACAACTAATCGTCACTTTTGGAGCTGTTGCCCTGTTTGTA
TACCACGAGGGCACTAAAACCTTTGCCAGGAATAACATGTGGCTCTTTTG
GGTTGCCCTCGGCGTAATGTTAGTAACCATGCTGTCTATGGCTTGCTGCG
AAAGTGTGCGCCGCCAAACACCGACGAACTTCATATTCTTGGGTCTGTTT
ACAGCAGCTCAGTCGTTCTTAATGGGAGTTTCCGCAACCAAATATGCTCC
GAAAGAGGTTCTCATGGCGGTGGGCATAACAGCAGCGGTTTGCTTGGCCC
TAACGATCTTCGCCTTGCAGACAAAGTACGACTTTACTATGATGGGCGGT
ATTTTGATCGCCTGCATGGTGGTGTTCCTGATCTTCGGCATCGTGGCCAT
CTTTGTAAAGGGAAAGATCATAACACTGGTGTACGCCTCGATTGGAGCGC
TGCTCTTCTCCGTTTATCTCATCTACGACACACAGTTAATGATGGGCGGC
GAGCACAAATACTCTATCAGTCCCGAGGAGTACATCTTTGCGGCACTAAA
CCTCTACCTGGACATCATCAATATCTTCATGTACATTCTGACTATAATCG
GCGCATCGCGCGACGCAAGCTTTCTAGACCAT

BO08249.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
Nmda1-RI 951 CG3798-PI 1..948 17..964 4740 100 Plus
Nmda1-RF 951 CG3798-PF 1..948 17..964 4740 100 Plus
Nmda1-RH 942 CG3798-PH 6..939 31..964 4670 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:45:00
Subject Length Description Subject Range Query Range Score Percent Strand
Nmda1-RI 1592 CG3798-RI 77..1028 13..964 4745 99.9 Plus
Nmda1-RF 2118 CG3798-RF 603..1554 13..964 4745 99.9 Plus
Nmda1-RH 1634 CG3798-RH 137..1070 31..964 4670 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:44:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12877658..12878016 964..606 1795 100 Minus
2R 25286936 2R 12878384..12878730 359..13 1720 99.7 Minus
2R 25286936 2R 12878071..12878322 609..358 1260 100 Minus
2R 25286936 2R 12875289..12875635 951..605 415 74.6 Minus
3R 32079331 3R 14152992..14153129 937..800 240 78.3 Minus
Blast to na_te.dros performed on 2014-11-27 15:44:58 has no hits.

BO08249.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:58 Download gff for BO08249.complete
Subject Subject Range Query Range Percent Splice Strand
Nmda1-RF 1..951 17..968 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:31:40 Download gff for BO08249.complete
Subject Subject Range Query Range Percent Splice Strand
Nmda1-RF 628..1585 13..972 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:41 Download gff for BO08249.complete
Subject Subject Range Query Range Percent Splice Strand
Nmda1-RF 607..1554 17..966 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:58 Download gff for BO08249.complete
Subject Subject Range Query Range Percent Splice Strand
Nmda1-RF 628..1585 13..972 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:37 Download gff for BO08249.complete
Subject Subject Range Query Range Percent Splice Strand
Nmda1-RF 607..1554 17..966 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:37 Download gff for BO08249.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12878073..12878321 359..607 100 <- Minus
2R 12877656..12878014 608..966 99 <- Minus
2R 12878385..12878726 17..358 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:41 Download gff for BO08249.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8765161..8765519 608..966 99 <- Minus
arm_2R 8765578..8765826 359..607 100 <- Minus
arm_2R 8765890..8766231 17..358 100   Minus

BO08249.pep Sequence

Translation from 16 to 982

> BO08249.pep
MSYFADPNQQYNYGGGNPPQGGYGGYPPQGGYPPQGPPQGYPPYAQGGAQ
PYPQPYGQGPPPGGYAPQPGFIQPPPSAGGYGAYDDPESQPKNFSFDDQS
IRRGFIRKVYLILMGQLIVTFGAVALFVYHEGTKTFARNNMWLFWVALGV
MLVTMLSMACCESVRRQTPTNFIFLGLFTAAQSFLMGVSATKYAPKEVLM
AVGITAAVCLALTIFALQTKYDFTMMGGILIACMVVFLIFGIVAIFVKGK
IITLVYASIGALLFSVYLIYDTQLMMGGEHKYSISPEEYIFAALNLYLDI
INIFMYILTIIGASRDASFLDH

BO08249.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:19:47
Subject Length Description Subject Range Query Range Score Percent Strand
Nmda1-PI 316 CG3798-PI 1..316 1..316 1682 100 Plus
Nmda1-PF 316 CG3798-PF 1..316 1..316 1682 100 Plus
Nmda1-PE 324 CG3798-PE 12..324 4..316 1658 99.4 Plus
Nmda1-PC 324 CG3798-PC 12..324 4..316 1658 99.4 Plus
Nmda1-PD 324 CG3798-PD 12..324 4..316 1658 99.4 Plus