Clone Sequence Records
BO08249.3prime Sequence
965 bp (838 high quality bases) assembled on 2006-01-06
> BO08249.3prime
ATGGTCTAGAAAGCTTGCGTCGCGCGATGCGCCGATTATAGTCAGAATGT
ACATGAAGATATTGATGATGTCCAGGTAGAGGTTTAGTGCCGCAAAGATG
TACTCCTCGGGACTGATAGAGTATTTGTGCTCGCCGCCCATCATTAACTG
TGTGTCGTAGATGAGATAAACGGAGAAGAGCAGCGCTCCAATCGAGGCGT
ACACCAGTGTTATGATCTTTCCCTTTACAAAGATGGCCACGATGCCGAAG
ATCAGGAACACCACCATGCAGGCGATCAAAATACCGCCCATCATAGTAAA
GTCGTACTTTGTCTGCAAGGCGAAGATCGTTAGGGCCAAGCAAACCGCTG
CTGTTATGCCCACCGCCATGAGAACCTCTTTCGGAGCATATTTGGTTGCG
GAAACTCCCATTAAGAACGACTGAGCTGCTGTAAACAGACCCAAGAATAT
GAAGTTCGTCGGTGTTTGGCGGCGCACACTTTCGCAGCAAGCCATAGACA
GCATGGTTACTAACATTACGCCGAGGGCAACCCAAAAGAGCCACATGTTA
TTCCTGGCAAAGGTTTTAGTGCCCTCGTGGTATACAAACAGGGCAACAGC
TCCAAAAGTGACGATTAGTTGTCCCATTAGAATCAGGTACACCTTACGTA
TGAATCCGCGACGGATGCTTTGGTCGTCAAACGAGAAGTTCTTGGGCTGG
CTCTCCGGATCATCGTAGGCTCCGTAGCCGCCAGCAGATGGTGGTGGTTG
GATAAATCCCGGCTGGGGAGCATAACCTCCCGGTGGAGGCCCCTGTCCGT
AGGGCTGTGGATAGGGTTGAGCACCTCCTTGTGCATAGGGTGGGTAGCCT
TGCGGCGGTCCTTGAGGTGGATAGCCGCCCTGAGGTGGATATCCACCATA
TCCTCCCTGCGGGGGATTACCGCCGCCATAGTTGTACTGCTGGTTGGGAT
CTGCGAAATAAAACA
BO08249.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3798-PF | 951 | Nmda1-RF | 6..948 | 961..19 | 4715 | 100 | Minus |
CG3798-PB | 942 | Nmda1-RB | 6..939 | 952..19 | 4670 | 100 | Minus |
CG3798-PD | 975 | Nmda1-RD | 39..972 | 952..19 | 4670 | 100 | Minus |
CG3798-PA | 942 | Nmda1-RA | 6..939 | 952..19 | 4670 | 100 | Minus |
CG3798-PC | 975 | Nmda1-RC | 39..972 | 952..19 | 4670 | 100 | Minus |
CG3798-PE | 975 | Nmda1-RE | 39..972 | 952..19 | 4670 | 100 | Minus |
CG3814-PB | 735 | CG3814-RB | 628..710 | 123..41 | 165 | 87.9 | Minus |
CG3814-PA | 720 | CG3814-RA | 649..695 | 87..41 | 135 | 91.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:41:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nmda1-RI | 1592 | CG3798-RI | 82..1028 | 965..19 | 4720 | 99.9 | Minus |
Nmda1-RF | 2118 | CG3798-RF | 608..1554 | 965..19 | 4720 | 99.9 | Minus |
Nmda1-RH | 1634 | CG3798-RH | 137..1070 | 952..19 | 4670 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:41:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12877658..12878016 | 19..377 | 1795 | 100 | Plus |
2R | 25286936 | 2R | 12878384..12878725 | 624..965 | 1695 | 99.7 | Plus |
2R | 25286936 | 2R | 12878071..12878322 | 374..625 | 1260 | 100 | Plus |
2R | 25286936 | 2R | 12875289..12875635 | 32..378 | 415 | 74.6 | Plus |
3R | 32079331 | 3R | 14152992..14153129 | 46..183 | 240 | 78.3 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:41:51 has no hits.
BO08249.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:07 Download gff for
BO08249.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmda1-PF | 3..951 | 15..964 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:34:19 Download gff for
BO08249.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3798-PF | 3..951 | 15..964 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:06:41 Download gff for
BO08249.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmda1-RF | 609..1560 | 11..964 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:58:42 Download gff for
BO08249.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmda1-RF | 609..1560 | 11..964 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:58:42 Download gff for
BO08249.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12878073..12878321 | 376..624 | 100 | <- | Plus |
2R | 12878385..12878724 | 625..964 | 99 | | Plus |
2R | 12877652..12878014 | 11..375 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:06:41 Download gff for
BO08249.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8765157..8765519 | 11..375 | 99 | <- | Plus |
arm_2R | 8765578..8765826 | 376..624 | 100 | <- | Plus |
arm_2R | 8765890..8766229 | 625..964 | 99 | | Plus |
BO08249.5prime Sequence
916 bp (852 high quality bases) assembled on 2006-01-06
> BO08249.5prime
GAAGTTATCAGTCGACATGTCTTATTTCGCAGATCCCAACCAGCAGTACA
ACTATGGCGGCGGTAATCCCCCGCAGGGAGGATATGGTGGATATCCACCT
CAGGGCGGCTATCCACCTCAAGGACCGCCGCAAGGCTACCCACCCTATGC
ACAAGGAGGTGCTCAACCCTATCCACAGCCCTACGGACAGGGGCCTCCAC
CGGGAGGTTATGCTCCCCAGCCGGGATTTATCCAACCACCACCATCTGCT
GGCGGCTACGGAGCCTACGATGATCCGGAGAGCCAGCCCAAGAACTTCTC
GTTTGACGACCAAAGCATCCGTCGCGGATTCATACGTAAGGTGTACCTGA
TTCTAATGGGACAACTAATCGTCACTTTTGGAGCTGTTGCCCTGTTTGTA
TACCACGAGGGCACTAAAACCTTTGCCAGGAATAACATGTGGCTCTTTTG
GGTTGCCCTCGGCGTAATGTTAGTAACCATGCTGTCTATGGCTTGCTGCG
AAAGTGTGCGCCGCCAAACACCGACGAACTTCATATTCTTGGGTCTGTTT
ACAGCAGCTCAGTCGTTCTTAATGGGAGTTTCCGCAACCAAATATGCTCC
GAAAGAGGTTCTCATGGCGGTGGGCATAACAGCAGCGGTTTGCTTGGCCC
TAACGATCTTCGCCTTGCAGACAAAGTACGACTTTACTATGATGGGCGGT
ATTTTGATCGCCTGCATGGTGGTGTTCCTGATCTTCGGCATCGTGGCCAT
CTTTGTAAAGGGAAAGATCATAACACTGGTGTACGCCTCGATTGGAGCGC
TGCTCTTCTCCGTTTATCTCATCTACGACACACAGTTAATGATGGGCGGC
GAGCACAAATACTCTATCAGTCCCGAGGAGTACATCTTTGCGGCACTAAA
CCTCTACCTGGACATC
BO08249.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3798-PF | 951 | Nmda1-RF | 1..900 | 17..916 | 4500 | 100 | Plus |
CG3798-PB | 942 | Nmda1-RB | 6..891 | 31..916 | 4430 | 100 | Plus |
CG3798-PD | 975 | Nmda1-RD | 39..924 | 31..916 | 4430 | 100 | Plus |
CG3798-PA | 942 | Nmda1-RA | 6..891 | 31..916 | 4430 | 100 | Plus |
CG3798-PC | 975 | Nmda1-RC | 39..924 | 31..916 | 4430 | 100 | Plus |
CG3798-PE | 975 | Nmda1-RE | 39..924 | 31..916 | 4430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:13:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nmda1-RI | 1592 | CG3798-RI | 77..980 | 13..916 | 4505 | 99.9 | Plus |
Nmda1-RF | 2118 | CG3798-RF | 603..1506 | 13..916 | 4505 | 99.9 | Plus |
Nmda1-RH | 1634 | CG3798-RH | 137..1022 | 31..916 | 4430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:13:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12878384..12878730 | 359..13 | 1720 | 99.7 | Minus |
2R | 25286936 | 2R | 12877706..12878016 | 916..606 | 1555 | 100 | Minus |
2R | 25286936 | 2R | 12878071..12878322 | 609..358 | 1260 | 100 | Minus |
2R | 25286936 | 2R | 12875325..12875635 | 915..605 | 325 | 73.6 | Minus |
3R | 32079331 | 3R | 14153029..14153129 | 900..800 | 235 | 82.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:13:05 has no hits.
BO08249.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:08 Download gff for
BO08249.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmda1-PF | 1..900 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:34:21 Download gff for
BO08249.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3798-PF | 1..900 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:48:03 Download gff for
BO08249.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmda1-RF | 603..1506 | 13..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:53:34 Download gff for
BO08249.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmda1-RF | 603..1506 | 13..916 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:53:34 Download gff for
BO08249.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12877706..12878014 | 608..916 | 100 | <- | Minus |
2R | 12878073..12878321 | 359..607 | 100 | <- | Minus |
2R | 12878385..12878730 | 13..358 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:48:03 Download gff for
BO08249.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8765211..8765519 | 608..916 | 100 | <- | Minus |
arm_2R | 8765578..8765826 | 359..607 | 100 | <- | Minus |
arm_2R | 8765890..8766235 | 13..358 | 99 | | Minus |
BO08249.complete Sequence
982 bp (982 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631121
> BO08249.complete
GAAGTTATCAGTCGACATGTCTTATTTCGCAGATCCCAACCAGCAGTACA
ACTATGGCGGCGGTAATCCCCCGCAGGGAGGATATGGTGGATATCCACCT
CAGGGCGGCTATCCACCTCAAGGACCGCCGCAAGGCTACCCACCCTATGC
ACAAGGAGGTGCTCAACCCTATCCACAGCCCTACGGACAGGGGCCTCCAC
CGGGAGGTTATGCTCCCCAGCCGGGATTTATCCAACCACCACCATCTGCT
GGCGGCTACGGAGCCTACGATGATCCGGAGAGCCAGCCCAAGAACTTCTC
GTTTGACGACCAAAGCATCCGTCGCGGATTCATACGTAAGGTGTACCTGA
TTCTAATGGGACAACTAATCGTCACTTTTGGAGCTGTTGCCCTGTTTGTA
TACCACGAGGGCACTAAAACCTTTGCCAGGAATAACATGTGGCTCTTTTG
GGTTGCCCTCGGCGTAATGTTAGTAACCATGCTGTCTATGGCTTGCTGCG
AAAGTGTGCGCCGCCAAACACCGACGAACTTCATATTCTTGGGTCTGTTT
ACAGCAGCTCAGTCGTTCTTAATGGGAGTTTCCGCAACCAAATATGCTCC
GAAAGAGGTTCTCATGGCGGTGGGCATAACAGCAGCGGTTTGCTTGGCCC
TAACGATCTTCGCCTTGCAGACAAAGTACGACTTTACTATGATGGGCGGT
ATTTTGATCGCCTGCATGGTGGTGTTCCTGATCTTCGGCATCGTGGCCAT
CTTTGTAAAGGGAAAGATCATAACACTGGTGTACGCCTCGATTGGAGCGC
TGCTCTTCTCCGTTTATCTCATCTACGACACACAGTTAATGATGGGCGGC
GAGCACAAATACTCTATCAGTCCCGAGGAGTACATCTTTGCGGCACTAAA
CCTCTACCTGGACATCATCAATATCTTCATGTACATTCTGACTATAATCG
GCGCATCGCGCGACGCAAGCTTTCTAGACCAT
BO08249.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:44:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nmda1-RI | 951 | CG3798-PI | 1..948 | 17..964 | 4740 | 100 | Plus |
Nmda1-RF | 951 | CG3798-PF | 1..948 | 17..964 | 4740 | 100 | Plus |
Nmda1-RH | 942 | CG3798-PH | 6..939 | 31..964 | 4670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:45:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nmda1-RI | 1592 | CG3798-RI | 77..1028 | 13..964 | 4745 | 99.9 | Plus |
Nmda1-RF | 2118 | CG3798-RF | 603..1554 | 13..964 | 4745 | 99.9 | Plus |
Nmda1-RH | 1634 | CG3798-RH | 137..1070 | 31..964 | 4670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:44:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12877658..12878016 | 964..606 | 1795 | 100 | Minus |
2R | 25286936 | 2R | 12878384..12878730 | 359..13 | 1720 | 99.7 | Minus |
2R | 25286936 | 2R | 12878071..12878322 | 609..358 | 1260 | 100 | Minus |
2R | 25286936 | 2R | 12875289..12875635 | 951..605 | 415 | 74.6 | Minus |
3R | 32079331 | 3R | 14152992..14153129 | 937..800 | 240 | 78.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:44:58 has no hits.
BO08249.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:58 Download gff for
BO08249.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmda1-RF | 1..951 | 17..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:31:40 Download gff for
BO08249.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmda1-RF | 628..1585 | 13..972 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:41 Download gff for
BO08249.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmda1-RF | 607..1554 | 17..966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:58 Download gff for
BO08249.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmda1-RF | 628..1585 | 13..972 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:37 Download gff for
BO08249.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nmda1-RF | 607..1554 | 17..966 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:37 Download gff for
BO08249.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12878073..12878321 | 359..607 | 100 | <- | Minus |
2R | 12877656..12878014 | 608..966 | 99 | <- | Minus |
2R | 12878385..12878726 | 17..358 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:41 Download gff for
BO08249.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8765161..8765519 | 608..966 | 99 | <- | Minus |
arm_2R | 8765578..8765826 | 359..607 | 100 | <- | Minus |
arm_2R | 8765890..8766231 | 17..358 | 100 | | Minus |
BO08249.pep Sequence
Translation from 16 to 982
> BO08249.pep
MSYFADPNQQYNYGGGNPPQGGYGGYPPQGGYPPQGPPQGYPPYAQGGAQ
PYPQPYGQGPPPGGYAPQPGFIQPPPSAGGYGAYDDPESQPKNFSFDDQS
IRRGFIRKVYLILMGQLIVTFGAVALFVYHEGTKTFARNNMWLFWVALGV
MLVTMLSMACCESVRRQTPTNFIFLGLFTAAQSFLMGVSATKYAPKEVLM
AVGITAAVCLALTIFALQTKYDFTMMGGILIACMVVFLIFGIVAIFVKGK
IITLVYASIGALLFSVYLIYDTQLMMGGEHKYSISPEEYIFAALNLYLDI
INIFMYILTIIGASRDASFLDH
BO08249.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:19:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nmda1-PI | 316 | CG3798-PI | 1..316 | 1..316 | 1682 | 100 | Plus |
Nmda1-PF | 316 | CG3798-PF | 1..316 | 1..316 | 1682 | 100 | Plus |
Nmda1-PE | 324 | CG3798-PE | 12..324 | 4..316 | 1658 | 99.4 | Plus |
Nmda1-PC | 324 | CG3798-PC | 12..324 | 4..316 | 1658 | 99.4 | Plus |
Nmda1-PD | 324 | CG3798-PD | 12..324 | 4..316 | 1658 | 99.4 | Plus |