Clone BO08250 Report

Search the DGRC for BO08250

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:82
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptCG10483-RA
Protein status:BO08250.pep: validated full length
Sequenced Size:2047

Clone Sequence Records

BO08250.3prime Sequence

899 bp (803 high quality bases) assembled on 2006-01-06

> BO08250.3prime
ATGGTCTAGAAAGCTTGCCGAGCAAAGATCCTCAATGGATTCCCCTTGAA
GGAGCAGTCGCTGCTCCTGTTTGTTCTTCTTCGTTGCGGATTTGCCGCCA
GCGGCTTTTCCACGCCTTCGATTCAACACGCCATCAGTTTCATCCATCAT
GCGCAAAATCGTGGTCTGATCCGAGCAATCCATTGGAGCGACCGATATAT
CCCTGACAGCCCTGAATTTGCCCACGTTGTTTAGATGCTCGTTCTCCAAC
CGAAAGTAATTCCAAATGAAGCGACGGAAAACCTCCAGGGGACTGAGAAT
GGTCATCATCACATCGCCCTCAATGTAGCCAGCCTCAATTAGACTCATGG
ACAGGGTCCAGCTGAAGCGCAGTATTAAATCCTCAATTATGCCAAAGTAG
TAGAACCACGTCGATGAATAAACGATTTCCTCACGCAAGAATCGATTGTC
GCCCGCCTTCGAGTCGAACAGTCCCCAGTCCATTTTGATGTCCCATGTGT
AGGCGTAGCAGGACGAGAAGATGGCGGCCGTAATCCAGCAGTAGAACCAA
GGATTCTCCTTGGACAGCGGGTAGGTGTCGGTGGTCGTGTGATATTTGTG
GGCAAATATAACCACAAAGAAGGACGTTGCATACTTGGCGGCGTTGACCA
GATGCGGAAATGACTCCTTTGTGTCGCGGTATCTGCGGATGCACTGGGCG
AACCGGAAGTAGGCAGGCATTATGGCAACAATGGGATGCAACAGAGACAC
GTACTCCACACAGTGGCTGGCAGCCTTGCCAGCCTTGTGCCATGTGGGAC
TTCGACCAAAGAAGCAAATCAGAAAGGGTATATCCAGAAAAGCTGGCACC
ATGCTGTTCAGCTGGTCGGCCAGCCAGAAATCGGCAAAGTTTACAAAGC

BO08250.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG10483-PA 2016 CG10483-RA 1133..2013 899..19 4405 100 Minus
CG7536-PB 2025 CG7536-RB 1513..1560 510..463 140 91.6 Minus
CG7536-PA 2025 CG7536-RA 1513..1560 510..463 140 91.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:18:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG10483-RA 2238 CG10483-RA 1244..2124 899..19 4405 100 Minus
CG7536-RD 3537 CG7536-RD 2234..2365 510..379 270 80.3 Minus
CG7536-RC 3494 CG7536-RC 1819..1950 510..379 270 80.3 Minus
CG7536-RD 3537 CG7536-RD 2456..2518 288..226 180 85.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:18:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5918360..5918603 166..409 1220 100 Plus
3L 28110227 3L 5919125..5919320 579..774 980 100 Plus
3L 28110227 3L 5918755..5918925 409..579 855 100 Plus
3L 28110227 3L 5918019..5918169 19..169 755 100 Plus
3L 28110227 3L 5919563..5919688 774..899 630 100 Plus
X 23542271 X 18080188..18080289 409..510 225 81.4 Plus
Blast to na_te.dros performed on 2015-02-11 04:18:52 has no hits.

BO08250.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:09 Download gff for BO08250.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10483-PA 1133..2016 18..899 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:34:22 Download gff for BO08250.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10483-PA 1133..2016 18..899 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:58:34 Download gff for BO08250.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10483-RA 1244..2129 11..899 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:43:27 Download gff for BO08250.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10483-RA 1244..2129 11..899 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:43:27 Download gff for BO08250.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5919563..5919688 774..899 100   Plus
3L 5918014..5918165 11..165 97 <- Plus
3L 5918360..5918602 166..408 100 <- Plus
3L 5918755..5918924 409..578 100 <- Plus
3L 5919125..5919319 579..773 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:58:34 Download gff for BO08250.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5912663..5912788 774..899 100   Plus
arm_3L 5911114..5911265 11..165 97 <- Plus
arm_3L 5911460..5911702 166..408 100 <- Plus
arm_3L 5911855..5912024 409..578 100 <- Plus
arm_3L 5912225..5912419 579..773 100 <- Plus

BO08250.5prime Sequence

906 bp (839 high quality bases) assembled on 2006-01-06

> BO08250.5prime
GAAGTTATCAGTCGACATGAAGTTCGCCGAGCACCTGACGGCCCACATAA
CGCCCGAGTGGCGAAAGCAGTACATTAACTATGAGGAAATGAAAGCCATG
CTGTATGCAGCCATCGAACAATCGCCCTCCGCAGAACTCGTGGAGCGCGA
GATGGTGACGCGATACTTTGCCAAATTCGATGAGGAGTTCTTTCACTACT
GCGACAAGGAGCTGGCCAAGATCAACACATTCTACTCGGAGAAGATGGCC
GAGGCGACACGCAAATATGGCAGTCTGCGCAGCGAGTTGACCGAAGCCCT
GGAAATGGGACACCCAAAGAAACTGCCCGCGTGGAAGAGGCGAACGCCGC
TGGGCAAGAAGAATGTGCCGGCGCGCAAGATACAGGATCTCAAGTTGGCA
TTTAGTGAATTTTATCTGGGACTGATACTGCTCCAGAACTATCAGAACCT
CAACTTCACGGGTTTCCGTAAGATACTTAAGAAGCACGACAAGTTGCTGA
GCGTCGACTATGGTGCACGTTGGCGCACGGATCACGTGGAGGCAGCCCAC
TTTTACACCAACAAGGACATTGATCGGCTGATCCAGGAGACGGAGCAGGC
TGTTACCCAGGACATCGAGGGAGGAGATCGTCAGAGGGCAATGAAGCGGT
TGAGGGTACCACCACTGGGCGAACAGCAGAGTCCTTGGACGACCTTCAAG
GTTGGTCTCTTTTCTGGCGCCTTTGTGGTGCTCTTCATTACGGTTGTGAT
CGCTGCCATGTTCTACGGATTCGGCGAGAACTGGCGGGCCGGAATGAGGA
TGTTCCGCGCACCATTCCTCATCATCGAATGCCTCTTCCTTTGGGGCGTC
AATGTCTACGGCTGGAGGTCGTCCGGTGTGAACCACGTCCTCATCTTTGA
GTTGGA

BO08250.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG10483-PA 2016 CG10483-RA 1..890 17..906 4450 100 Plus
CG7536-PB 2025 CG7536-RB 1..90 17..106 275 92.2 Plus
CG7536-PA 2025 CG7536-RA 1..90 17..106 275 92.2 Plus
CG7536-PB 2025 CG7536-RB 631..686 656..711 155 91 Plus
CG7536-PA 2025 CG7536-RA 631..686 656..711 155 91 Plus
CG7536-PB 2025 CG7536-RB 154..197 170..213 145 93.1 Plus
CG7536-PA 2025 CG7536-RA 154..197 170..213 145 93.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:19:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG10483-RA 2238 CG10483-RA 108..1001 13..906 4455 99.9 Plus
CG7536-RD 3537 CG7536-RD 721..960 16..255 540 81.7 Plus
CG7536-RC 3494 CG7536-RC 306..545 16..255 540 81.7 Plus
CG7536-RD 3537 CG7536-RD 1088..1480 392..781 400 74.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:18:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5919931..5920753 906..84 4115 100 Minus
3L 28110227 3L 5921136..5921209 86..13 355 98.6 Minus
X 23542271 X 18081118..18081349 767..536 290 75 Minus
X 23542271 X 18081972..18082143 255..84 290 77.9 Minus
X 23542271 X 18082218..18082288 86..16 265 91.5 Minus
X 23542271 X 18081747..18081844 489..392 190 79.6 Minus
Blast to na_te.dros performed on 2015-02-11 04:19:00 has no hits.

BO08250.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:10 Download gff for BO08250.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10483-PA 1..889 17..905 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:34:24 Download gff for BO08250.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10483-PA 1..889 17..905 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:58:36 Download gff for BO08250.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10483-RA 105..1000 8..905 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:44:01 Download gff for BO08250.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10483-RA 105..1000 8..905 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:44:01 Download gff for BO08250.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5919932..5920751 86..905 100 <- Minus
3L 5921137..5921212 8..85 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:58:36 Download gff for BO08250.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5913032..5913851 86..905 100 <- Minus
arm_3L 5914237..5914312 8..85 94   Minus

BO08250.complete Sequence

2047 bp (2047 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631122

> BO08250.complete
GAAGTTATCAGTCGACATGAAGTTCGCCGAGCACCTGACGGCCCACATAA
CGCCCGAGTGGCGAAAGCAGTACATTAACTATGAGGAAATGAAAGCCATG
CTGTATGCAGCCATCGAACAATCGCCCTCCGCAGAACTCGTGGAGCGCGA
GATGGTGACGCGATACTTTGCCAAATTCGATGAGGAGTTCTTTCACTACT
GCGACAAGGAGCTGGCCAAGATCAACACATTCTACTCGGAGAAGATGGCC
GAGGCGACACGCAAATATGGCAGTCTGCGCAGCGAGTTGACCGAAGCCCT
GGAAATGGGACACCCAAAGAAACTGCCCGCGTGGAAGAGGCGAACGCCGC
TGGGCAAGAAGAATGTGCCGGCGCGCAAGATACAGGATCTCAAGTTGGCA
TTTAGTGAATTTTATCTGGGACTGATACTGCTCCAGAACTATCAGAACCT
CAACTTCACGGGTTTCCGTAAGATACTTAAGAAGCACGACAAGTTGCTGA
GCGTCGACTATGGTGCACGTTGGCGCACGGATCACGTGGAGGCAGCCCAC
TTTTACACCAACAAGGACATTGATCGGCTGATCCAGGAGACGGAGCAGGC
TGTTACCCAGGACATCGAGGGAGGAGATCGTCAGAGGGCAATGAAGCGGT
TGAGGGTACCACCACTGGGCGAACAGCAGAGTCCTTGGACGACCTTCAAG
GTTGGTCTCTTTTCTGGCGCCTTTGTGGTGCTCTTCATTACGGTTGTGAT
CGCTGCCATGTTCTACGGATTCGGCGAGAACTGGCGGGCCGGAATGAGGA
TGTTCCGCGCACCATTCCTCATCATCGAATGCCTCTTCCTTTGGGGCGTC
AATGTCTACGGCTGGAGGTCGTCCGGTGTGAACCACGTCCTCATCTTTGA
GTTGGATCCACGAAATCACCTGTCCGAGCAAAACATCATGGAAGTGGCAT
CCGTGTTTGGAGTTATCTGGGCCTGCTGCGTCCTGAGCTACATCTTTTGC
GATCCCCTCGGCATCCCACAGTACGCAGCTCCGCTTTGCCTCTACACATT
GATGGCTGCCTTTTTGCTGAATCCCACGAAGACGTTCCATCATGAGGCCC
GGTTTTGGGCCATAAGGATCCTCATCCGGGTAATCATGGCTCCGTTCTGC
TTTGTAAACTTTGCCGATTTCTGGCTGGCCGACCAGCTGAACAGCATGGT
GCCAGCTTTTCTGGATATACCCTTTCTGATTTGCTTCTTTGGTCGAAGTC
CCACATGGCACAAGGCTGGCAAGGCTGCCAGCCACTGTGTGGAGTACGTG
TCTCTGTTGCATCCCATTGTTGCCATAATGCCTGCCTACTTCCGGTTCGC
CCAGTGCATCCGCAGATACCGCGACACAAAGGAGTCATTTCCGCATCTGG
TCAACGCCGCCAAGTATGCAACGTCCTTCTTTGTGGTTATATTTGCCCAC
AAATATCACACGACCACCGACACCTACCCGCTGTCCAAGGAGAATCCTTG
GTTCTACTGCTGGATTACGGCCGCCATCTTCTCGTCCTGCTACGCCTACA
CATGGGACATCAAAATGGACTGGGGACTGTTCGACTCGAAGGCGGGCGAC
AATCGATTCTTGCGTGAGGAAATCGTTTATTCATCGACGTGGTTCTACTA
CTTTGGCATAATTGAGGATTTAATACTGCGCTTCAGCTGGACCCTGTCCA
TGAGTCTAATTGAGGCTGGCTACATTGAGGGCGATGTGATGATGACCATT
CTCAGTCCCCTGGAGGTTTTCCGTCGCTTCATTTGGAATTACTTTCGGTT
GGAGAACGAGCATCTAAACAACGTGGGCAAATTCAGGGCTGTCAGGGATA
TATCGGTCGCTCCAATGGATTGCTCGGATCAGACCACGATTTTGCGCATG
ATGGATGAAACTGATGGCGTGTTGAATCGAAGGCGTGGAAAAGCCGCTGG
CGGCAAATCCGCAACGAAGAAGAACAAACAGGAGCAGCGACTGCTCCTTC
AAGGGGAATCCATTGAGGATCTTTGCTCGGCAAGCTTTCTAGACCAT

BO08250.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:02:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG10483-RA 2016 CG10483-PA 1..2013 17..2029 10065 100 Plus
CG7536-RD 2025 CG7536-PD 1..239 17..255 535 81.6 Plus
CG7536-RC 2025 CG7536-PC 1..239 17..255 535 81.6 Plus
CG7536-RD 2025 CG7536-PD 367..926 392..948 420 72.5 Plus
CG7536-RD 2025 CG7536-PD 1513..1644 1538..1669 270 80.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG10483-RA 2238 CG10483-RA 108..2124 13..2029 10070 100 Plus
CG7536-RD 3537 CG7536-RD 721..960 16..255 540 81.7 Plus
CG7536-RC 3494 CG7536-RC 306..545 16..255 540 81.7 Plus
CG7536-RD 3537 CG7536-RD 1088..1647 392..948 420 72.5 Plus
CG7536-RD 3537 CG7536-RD 2234..2365 1538..1669 270 80.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:02:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5919563..5920753 1274..84 5955 100 Minus
3L 28110227 3L 5918360..5918603 1882..1639 1220 100 Minus
3L 28110227 3L 5919125..5919320 1469..1274 980 100 Minus
3L 28110227 3L 5918755..5918925 1639..1469 855 100 Minus
3L 28110227 3L 5918019..5918169 2029..1879 755 100 Minus
3L 28110227 3L 5921136..5921209 86..13 355 98.6 Minus
X 23542271 X 18080934..18081349 948..536 330 73.1 Minus
X 23542271 X 18081972..18082143 255..84 290 77.9 Minus
X 23542271 X 18082218..18082288 86..16 265 91.5 Minus
X 23542271 X 18080188..18080289 1639..1538 225 81.4 Minus
X 23542271 X 18081747..18081844 489..392 190 79.6 Minus
Blast to na_te.dros performed on 2014-11-27 02:02:12 has no hits.

BO08250.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:07 Download gff for BO08250.complete
Subject Subject Range Query Range Percent Splice Strand
CG10483-RA 1..2016 17..2030 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:19:37 Download gff for BO08250.complete
Subject Subject Range Query Range Percent Splice Strand
CG10483-RA 87..2111 8..2037 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:51 Download gff for BO08250.complete
Subject Subject Range Query Range Percent Splice Strand
CG10483-RA 112..2124 17..2031 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:07 Download gff for BO08250.complete
Subject Subject Range Query Range Percent Splice Strand
CG10483-RA 87..2111 8..2037 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:36:20 Download gff for BO08250.complete
Subject Subject Range Query Range Percent Splice Strand
CG10483-RA 112..2124 17..2031 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:36:20 Download gff for BO08250.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5918017..5918165 1883..2031 98 <- Minus
3L 5918360..5918602 1640..1882 100 <- Minus
3L 5918755..5918924 1470..1639 100 <- Minus
3L 5919125..5919319 1275..1469 100 <- Minus
3L 5919563..5920751 86..1274 100 <- Minus
3L 5921137..5921205 17..85 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:51 Download gff for BO08250.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5911117..5911265 1883..2031 98 <- Minus
arm_3L 5911460..5911702 1640..1882 100 <- Minus
arm_3L 5911855..5912024 1470..1639 100 <- Minus
arm_3L 5912225..5912419 1275..1469 100 <- Minus
arm_3L 5912663..5913851 86..1274 100 <- Minus
arm_3L 5914237..5914305 17..85 100   Minus

BO08250.pep Sequence

Translation from 16 to 2047

> BO08250.pep
MKFAEHLTAHITPEWRKQYINYEEMKAMLYAAIEQSPSAELVEREMVTRY
FAKFDEEFFHYCDKELAKINTFYSEKMAEATRKYGSLRSELTEALEMGHP
KKLPAWKRRTPLGKKNVPARKIQDLKLAFSEFYLGLILLQNYQNLNFTGF
RKILKKHDKLLSVDYGARWRTDHVEAAHFYTNKDIDRLIQETEQAVTQDI
EGGDRQRAMKRLRVPPLGEQQSPWTTFKVGLFSGAFVVLFITVVIAAMFY
GFGENWRAGMRMFRAPFLIIECLFLWGVNVYGWRSSGVNHVLIFELDPRN
HLSEQNIMEVASVFGVIWACCVLSYIFCDPLGIPQYAAPLCLYTLMAAFL
LNPTKTFHHEARFWAIRILIRVIMAPFCFVNFADFWLADQLNSMVPAFLD
IPFLICFFGRSPTWHKAGKAASHCVEYVSLLHPIVAIMPAYFRFAQCIRR
YRDTKESFPHLVNAAKYATSFFVVIFAHKYHTTTDTYPLSKENPWFYCWI
TAAIFSSCYAYTWDIKMDWGLFDSKAGDNRFLREEIVYSSTWFYYFGIIE
DLILRFSWTLSMSLIEAGYIEGDVMMTILSPLEVFRRFIWNYFRLENEHL
NNVGKFRAVRDISVAPMDCSDQTTILRMMDETDGVLNRRRGKAAGGKSAT
KKNKQEQRLLLQGESIEDLCSASFLDH

BO08250.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:45:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG10483-PA 671 CG10483-PA 1..671 1..671 3589 100 Plus
CG7536-PD 674 CG7536-PD 1..665 1..669 2183 62.4 Plus
CG7536-PC 674 CG7536-PC 1..665 1..669 2183 62.4 Plus
CG7536-PA 674 CG7536-PA 1..665 1..669 2183 62.4 Plus
CG7536-PB 674 CG7536-PB 1..665 1..669 2183 62.4 Plus