Clone Sequence Records
BO08251.3prime Sequence
909 bp (797 high quality bases) assembled on 2006-01-06
> BO08251.3prime
ATGGTCTAGAAAGCTTGCGTTCTGTTTCCAACTGGTCGCTTTATAGTAGA
CCTCGCGGTACATGGTGGGGCAGGCGGCCTTGCCGTTCGACTTCGTCGTC
TTGAAATCAATATTGGTGCGAATGGGCCGGTGCAGGAGCGGCTGGGGCGG
CCGGTAATTGTTGCCCAGGGGCGCTTTCGGGTGGTCTGGACTGCCCTGCA
TCAGGCGGCGCAGGGCGTGCAACTGTTGCTTTGTGATGTAGATGGGCTTG
TTGAGCACCACCCAGGTGACTGTTTCGTGGCAGGCAGGTGCCGTTGTGGA
TCCATCGTAGGTCATATAGTGATCCGTGTCCGGTAGCAGTCCGCGGATGG
AGAGACGCTTAACGAAGGCCTCATCGCCGCCATAGCGAATGCGCTCCAGC
TGATCGGTGAGCATGCGCAGCTCCGCATTCGAGAGATCTCCAAGCTGCAG
CAGAATGGAGACACCGACGATGCCCTGGGCGCGATTGAGGGCATCTGAGA
AATTTGCATACAGCTGGGAATTGTAGCCGAATATTTGTATCTCCGCCGGG
AACGTATAGCCCTCGACACTGTGCTCCGATCCAAATTGGTCGTTCAATCC
GTAGTGCATGTGGATCTCGTGGAAACGGTAGCGATACGACAACGGTCCGC
CCGATATATTCACTGGCGTCTGCATACCGTCGTAGTTGGCCACCGTATCA
TTGCCGGCCGTAAAGATGACGCTGTGGCCCGTATTAGTGATCAATCCGGA
TATCCTGTGCTTGTCTATGTGCATGGGCCTCAAGTTGGGATCAAATAGCA
GGCGTTGGGGTTCCAGATTGACCGGCGATTGGCGACGACCCTTGTTGCAG
AGCGACCACTCCGGATTGATGAGGCCCCAAAAGGCAGGTCCTGAGATGCC
ATCGTATGT
BO08251.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32698-PA | 984 | CG32698-RA | 91..981 | 909..19 | 4455 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:19:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32698-RD | 1775 | CG32698-RD | 579..1469 | 909..19 | 4455 | 100 | Minus |
CG32698-RB | 2007 | CG32698-RB | 811..1701 | 909..19 | 4455 | 100 | Minus |
CG32698-RC | 8207 | CG32698-RC | 788..1678 | 909..19 | 4455 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:19:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9845957..9846180 | 446..223 | 1120 | 100 | Minus |
X | 23542271 | X | 9836593..9836806 | 754..541 | 1070 | 100 | Minus |
X | 23542271 | X | 9848528..9848715 | 226..39 | 940 | 100 | Minus |
X | 23542271 | X | 9836310..9836450 | 894..754 | 705 | 100 | Minus |
X | 23542271 | X | 9845699..9845796 | 542..445 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:19:14 has no hits.
BO08251.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:11 Download gff for
BO08251.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32698-PA | 91..984 | 18..909 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:34:24 Download gff for
BO08251.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32698-PA | 91..984 | 18..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:58:38 Download gff for
BO08251.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32698-RA | 566..1456 | 19..909 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:45:14 Download gff for
BO08251.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32698-RC | 788..1678 | 19..909 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:45:14 Download gff for
BO08251.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9845959..9846180 | 223..444 | 100 | -> | Minus |
X | 9848532..9848715 | 39..222 | 100 | -> | Minus |
X | 9832524..9832542 | 891..909 | 100 | -> | Minus |
X | 9836314..9836450 | 754..890 | 100 | -> | Minus |
X | 9836594..9836806 | 541..753 | 100 | -> | Minus |
X | 9845701..9845796 | 445..540 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:58:38 Download gff for
BO08251.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9742565..9742748 | 39..222 | 100 | -> | Minus |
arm_X | 9726557..9726575 | 891..909 | 100 | -> | Minus |
arm_X | 9730347..9730483 | 754..890 | 100 | -> | Minus |
arm_X | 9730627..9730839 | 541..753 | 100 | -> | Minus |
arm_X | 9739734..9739829 | 445..540 | 100 | -> | Minus |
arm_X | 9739992..9740213 | 223..444 | 100 | -> | Minus |
BO08251.5prime Sequence
763 bp (762 high quality bases) assembled on 2006-01-06
> BO08251.5prime
GAAGTTATCAGTCGACATGGAGCTGCTGCAGGCCCTCTGCTGTACGCTGC
TCCTGCTTTTGGCCCGGATGCAAGTTCTGCTTGCCGTCAGTTGGGAGGAT
TGGTGGACATACGATGGCATCTCAGGACCTGCCTTTTGGGGCCTCATCAA
TCCGGAGTGGTCGCTCTGCAACAAGGGTCGTCGCCAATCGCCGGTCAATC
TGGAACCCCAACGCCTGCTATTTGATCCCAACTTGAGGCCCATGCACATA
GACAAGCACAGGATATCCGGATTGATCACTAATACGGGCCACAGCGTCAT
CTTTACGGCCGGCAATGATACGGTGGCCAACTACGACGGTATGCAGACGC
CAGTGAATATATCGGGCGGACCGTTGTCGTATCGCTACCGTTTCCACGAG
ATCCACATGCACTACGGATTGAACGACCAATTTGGATCGGAGCACAGTGT
CGAGGGCTATACGTTCCCGGCGGAGATACAAATATTCGGCTACAATTCCC
AGCTGTATGCAAATTTCTCAGATGCCCTCAATCGCGCCCAGGGCATCGTC
GGTGTCTCCATTCTGCTGCAGCTTGGAGATCTCTCGAATGCGGAGCTGCG
CATGCTCACCGATCAGCTGGAGCGCATTCGCTATGGCGGCGATGAGGCCT
TCGTTAAGCGTCTCTCCATCCGCGGACTGCTACCGGACACGGATCACTAT
ATGACCTACGATGGATCCACAACGGCACCTGCCTGCCACGAAACAGTCAC
CTGGGTGGTGCTC
BO08251.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32698-PA | 984 | CG32698-RA | 1..747 | 17..763 | 3735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:08:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32698-RD | 1775 | CG32698-RD | 489..1235 | 17..763 | 3735 | 100 | Plus |
CG32698-RB | 2007 | CG32698-RB | 721..1467 | 17..763 | 3735 | 100 | Plus |
CG32698-RC | 8207 | CG32698-RC | 698..1444 | 17..763 | 3735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:08:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9836593..9836806 | 262..475 | 1070 | 100 | Plus |
X | 23542271 | X | 9845957..9846150 | 570..763 | 970 | 100 | Plus |
X | 23542271 | X | 9836310..9836450 | 122..262 | 705 | 100 | Plus |
X | 23542271 | X | 9845699..9845796 | 474..571 | 490 | 100 | Plus |
X | 23542271 | X | 9812099..9812156 | 17..74 | 290 | 100 | Plus |
X | 23542271 | X | 9832490..9832543 | 73..126 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:08:51 has no hits.
BO08251.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:12 Download gff for
BO08251.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32698-PA | 1..747 | 17..763 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:34:26 Download gff for
BO08251.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32698-PA | 1..747 | 17..763 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:24:56 Download gff for
BO08251.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32698-RA | 476..1222 | 17..763 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:26:32 Download gff for
BO08251.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32698-RC | 698..1444 | 17..763 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:26:32 Download gff for
BO08251.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9812099..9812156 | 17..74 | 100 | -> | Plus |
X | 9832492..9832542 | 75..125 | 100 | -> | Plus |
X | 9836314..9836450 | 126..262 | 100 | -> | Plus |
X | 9836594..9836806 | 263..475 | 100 | -> | Plus |
X | 9845701..9845796 | 476..571 | 100 | -> | Plus |
X | 9845959..9846150 | 572..763 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:24:56 Download gff for
BO08251.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9706132..9706189 | 17..74 | 100 | -> | Plus |
arm_X | 9726525..9726575 | 75..125 | 100 | -> | Plus |
arm_X | 9730347..9730483 | 126..262 | 100 | -> | Plus |
arm_X | 9730627..9730839 | 263..475 | 100 | -> | Plus |
arm_X | 9739734..9739829 | 476..571 | 100 | -> | Plus |
arm_X | 9739992..9740183 | 572..763 | 100 | | Plus |
BO08251.complete Sequence
1015 bp (1015 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631123
> BO08251.complete
GAAGTTATCAGTCGACATGGAGCTGCTGCAGGCCCTCTGCTGTACGCTGC
TCCTGCTTTTGGCCCGGATGCAAGTTCTGCTTGCCGTCAGTTGGGAGGAT
TGGTGGACATACGATGGCATCTCAGGACCTGCCTTTTGGGGCCTCATCAA
TCCGGAGTGGTCGCTCTGCAACAAGGGTCGTCGCCAATCGCCGGTCAATC
TGGAACCCCAACGCCTGCTATTTGATCCCAACTTGAGGCCCATGCACATA
GACAAGCACAGGATATCCGGATTGATCACTAATACGGGCCACAGCGTCAT
CTTTACGGCCGGCAATGATACGGTGGCCAACTACGACGGTATGCAGACGC
CAGTGAATATATCGGGCGGACCGTTGTCGTATCGCTACCGTTTCCACGAG
ATCCACATGCACTACGGATTGAACGACCAATTTGGATCGGAGCACAGTGT
CGAGGGCTATACGTTCCCGGCGGAGATACAAATATTCGGCTACAATTCCC
AGCTGTATGCAAATTTCTCAGATGCCCTCAATCGCGCCCAGGGCATCGTC
GGTGTCTCCATTCTGCTGCAGCTTGGAGATCTCTCGAATGCGGAGCTGCG
CATGCTCACCGATCAGCTGGAGCGCATTCGCTATGGCGGCGATGAGGCCT
TCGTTAAGCGTCTCTCCATCCGCGGACTGCTACCGGACACGGATCACTAT
ATGACCTACGATGGATCCACAACGGCACCTGCCTGCCACGAAACAGTCAC
CTGGGTGGTGCTCAACAAGCCCATCTACATCACAAAGCAACAGTTGCACG
CCCTGCGCCGCCTGATGCAGGGCAGTCCAGACCACCCGAAAGCGCCCCTG
GGCAACAATTACCGGCCGCCCCAGCCGCTCCTGCACCGGCCCATTCGCAC
CAATATTGATTTCAAGACGACGAAGTCGAACGGCAAGGCCGCCTGCCCCA
CCATGTACCGCGAGGTCTACTATAAAGCGACCAGTTGGAAACAGAACGCA
AGCTTTCTAGACCAT
BO08251.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:34:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32698-RD | 984 | CG32698-PD | 1..981 | 17..997 | 4905 | 100 | Plus |
CG32698-RB | 984 | CG32698-PB | 1..981 | 17..997 | 4905 | 100 | Plus |
CG32698-RC | 984 | CG32698-PC | 1..981 | 17..997 | 4905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:34:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32698-RD | 1775 | CG32698-RD | 489..1469 | 17..997 | 4905 | 100 | Plus |
CG32698-RB | 2007 | CG32698-RB | 721..1701 | 17..997 | 4905 | 100 | Plus |
CG32698-RC | 8207 | CG32698-RC | 698..1678 | 17..997 | 4905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:33:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9845957..9846180 | 570..793 | 1120 | 100 | Plus |
X | 23542271 | X | 9836593..9836806 | 262..475 | 1070 | 100 | Plus |
X | 23542271 | X | 9848528..9848715 | 790..977 | 940 | 100 | Plus |
X | 23542271 | X | 9836310..9836450 | 122..262 | 705 | 100 | Plus |
X | 23542271 | X | 9845699..9845796 | 474..571 | 490 | 100 | Plus |
X | 23542271 | X | 9812099..9812156 | 17..74 | 290 | 100 | Plus |
X | 23542271 | X | 9832490..9832543 | 73..126 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:34:00 has no hits.
BO08251.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:01 Download gff for
BO08251.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32698-RA | 1..984 | 17..998 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:56:45 Download gff for
BO08251.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32698-RA | 460..1440 | 17..999 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:47 Download gff for
BO08251.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32698-RA | 476..1456 | 17..999 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:02 Download gff for
BO08251.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32698-RA | 460..1440 | 17..997 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:38 Download gff for
BO08251.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32698-RC | 698..1678 | 17..999 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:38 Download gff for
BO08251.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9836594..9836806 | 263..475 | 100 | -> | Plus |
X | 9845701..9845796 | 476..571 | 100 | -> | Plus |
X | 9845959..9846180 | 572..793 | 100 | -> | Plus |
X | 9848532..9848715 | 794..977 | 100 | -> | Plus |
X | 9812099..9812156 | 17..74 | 100 | -> | Plus |
X | 9832492..9832542 | 75..125 | 100 | -> | Plus |
X | 9836314..9836450 | 126..262 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:47 Download gff for
BO08251.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9730627..9730839 | 263..475 | 100 | -> | Plus |
arm_X | 9739734..9739829 | 476..571 | 100 | -> | Plus |
arm_X | 9706132..9706189 | 17..74 | 100 | -> | Plus |
arm_X | 9726525..9726575 | 75..125 | 100 | -> | Plus |
arm_X | 9730347..9730483 | 126..262 | 100 | -> | Plus |
arm_X | 9739992..9740213 | 572..793 | 100 | -> | Plus |
arm_X | 9742565..9742748 | 794..977 | 100 | -> | Plus |
BO08251.pep Sequence
Translation from 16 to 1015
> BO08251.pep
MELLQALCCTLLLLLARMQVLLAVSWEDWWTYDGISGPAFWGLINPEWSL
CNKGRRQSPVNLEPQRLLFDPNLRPMHIDKHRISGLITNTGHSVIFTAGN
DTVANYDGMQTPVNISGGPLSYRYRFHEIHMHYGLNDQFGSEHSVEGYTF
PAEIQIFGYNSQLYANFSDALNRAQGIVGVSILLQLGDLSNAELRMLTDQ
LERIRYGGDEAFVKRLSIRGLLPDTDHYMTYDGSTTAPACHETVTWVVLN
KPIYITKQQLHALRRLMQGSPDHPKAPLGNNYRPPQPLLHRPIRTNIDFK
TTKSNGKAACPTMYREVYYKATSWKQNASFLDH
BO08251.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:19:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32698-PD | 327 | CG32698-PD | 1..327 | 1..327 | 1766 | 100 | Plus |
CG32698-PB | 327 | CG32698-PB | 1..327 | 1..327 | 1766 | 100 | Plus |
CG32698-PC | 327 | CG32698-PC | 1..327 | 1..327 | 1766 | 100 | Plus |
CG32698-PA | 327 | CG32698-PA | 1..327 | 1..327 | 1766 | 100 | Plus |
CG1402-PC | 333 | CG1402-PC | 18..331 | 7..331 | 1027 | 54.8 | Plus |