Clone Sequence Records
BO08253.3prime Sequence
861 bp (839 high quality bases) assembled on 2006-01-06
> BO08253.3prime
ATGGTCTAGAAAGCTTGCTGTGTTTTGCTGCCAGTGGTGCTGCTGTCGCA
ACTTTTCGGCCTTCCAACTGGATTCGCCCACACTTGGCGGATAGGGTATA
ATATCCGGCTGCTGTTCCGAGGACATGTTGTCCACATCGTTGTGGTCGAG
GTTGTTGCCGCTGTCGACCACATCCTCTTCGTTGTCCTTGTTGTTGCCAG
CATTGTTGTTGGTCGGCTCATTTGGTTCGCCATTAGTTTCGTGGTTCCGG
CCTCGGTTATTGTTTTTGTAATTGTAATAACCATATTTATTCGTGTTAGC
CATATTGTCGTTGCTGTTGCTGTTGCTACTAATGTTGCTGCTGCCCGCGT
TGCAATTCTTCGTGCTGCATTCACATTTCAGTATCCATTCGACGGCAATG
AATTTATTCTCGATTTGTATCTGATGTGATTGCAGGAATTCCTGATCGAT
TGGCTCCAAGGCGACCGTGTCCCATAACTGTGCACTTTGCAGCACCGGCT
CAGGCTCCACATTATCATCCCCATCATCATCATCATCATCATCTTCATCA
TCCTGGGGCTCCTTCATCTGCCTTTTTTTGTTCGCTTGACGTCGCTGTAC
GTAGTTAATTGGATCGACAGCATTTAAAGGACACAGCAACTCAACCTGTA
TCGTAGTGGATACCGCCGGGGCACAGCATTTGACCCCGCGATGGCAACGG
CCACAGAGCTTCGGTCGATACAGCTTTCGGGAAACGCACTCGCCCAGTCG
TATCCTGGCAGGACCTAGGCGCTGGATGCTCCGACACTCGTGGCCCTTTC
GTATCCTGTGGGCCGGCTCCTCGTGCTCCTTGTGGTGATGATAACGCTGA
TGGGAGTGGCT
BO08253.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32183-PB | 1413 | Ccn-RB | 568..1410 | 861..19 | 4215 | 100 | Minus |
| CG32183-PA | 1125 | Ccn-RA | 782..1122 | 359..19 | 1705 | 100 | Minus |
| CG32183-PA | 1125 | Ccn-RA | 568..783 | 861..646 | 1080 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:03:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ccn-RB | 2778 | CG32183-RB | 1118..1960 | 861..19 | 4215 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:03:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17747681..17748021 | 359..19 | 1705 | 100 | Minus |
| 3L | 28110227 | 3L | 17738636..17738926 | 648..358 | 1455 | 100 | Minus |
| 3L | 28110227 | 3L | 17730189..17730343 | 798..644 | 775 | 100 | Minus |
| 3L | 28110227 | 3L | 17729811..17729873 | 861..799 | 315 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 15:03:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2768..3004 | 344..104 | 193 | 57.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2294..2540 | 386..140 | 181 | 57.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6923 | 368..181 | 174 | 56.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2630 | 344..15 | 173 | 53.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..7083 | 367..104 | 168 | 55.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2401 | 367..303 | 162 | 73.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2388..2625 | 367..139 | 159 | 55.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6705..6904 | 387..176 | 158 | 56.6 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1094..1200 | 370..261 | 155 | 62.7 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1069..1131 | 368..306 | 153 | 71.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6828 | 367..315 | 148 | 75.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6927 | 342..146 | 147 | 57.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2354..2530 | 368..189 | 145 | 55.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2780..2998 | 371..141 | 145 | 56.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6842..6888 | 352..306 | 136 | 76.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6835..6897 | 368..306 | 135 | 68.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6822 | 368..303 | 132 | 66.7 | Minus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3284..3323 | 344..305 | 128 | 80 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2459..2521 | 368..306 | 126 | 66.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..6846 | 367..306 | 123 | 69.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1514..1579 | 371..303 | 122 | 66.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2846..3004 | 344..173 | 117 | 60 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1087..1149 | 368..303 | 115 | 68.2 | Minus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3269..3319 | 353..303 | 111 | 68.6 | Minus |
BO08253.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:15 Download gff for
BO08253.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccn-PB | 568..1413 | 18..861 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:34:31 Download gff for
BO08253.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32183-PB | 568..1413 | 18..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:13:08 Download gff for
BO08253.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccn-RB | 1118..1964 | 13..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:12:15 Download gff for
BO08253.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccn-RB | 1118..1964 | 13..861 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:12:15 Download gff for
BO08253.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17729811..17729873 | 799..861 | 100 | -> | Minus |
| 3L | 17730189..17730341 | 646..798 | 100 | -> | Minus |
| 3L | 17738639..17738926 | 358..645 | 100 | -> | Minus |
| 3L | 17747683..17748025 | 13..357 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:13:08 Download gff for
BO08253.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17722911..17722973 | 799..861 | 100 | -> | Minus |
| arm_3L | 17723289..17723441 | 646..798 | 100 | -> | Minus |
| arm_3L | 17731739..17732026 | 358..645 | 100 | -> | Minus |
| arm_3L | 17740783..17741125 | 13..357 | 99 | | Minus |
BO08253.5prime Sequence
871 bp (816 high quality bases) assembled on 2006-01-06
> BO08253.5prime
GAAGTTATCAGTCGACATGCTGATACTGCTGCCGCTGCTTGGAATTTTTG
GTAATGGTTTCGTTGCTGAAGTCGAGGCAAATCTAAGTCTGGGCTTTAAG
GCCATCAAATTGCCCAGGCATCCGAATCCGGCCAATTGCAGTGTGGGCAA
CACAACATTCGCACATGGAGTCACATTCAAATTGGATTGTAAAACCCAAT
GCGTTTGCGAGAATGGCCGCCACGCCTGCTCCACGCTCTGCCCCAATGAG
CAGCTCCCGGCGCCGGAGGACACGATTTCATGCCGATCGCCGCGCCTCGT
CGAAGTTCCCGGCCACTGTTGCAAGATGTGGCTATGTGAGAATCCAACAG
CTGATGTTTACGCCACCTGCCACAACAGCACCACCAGCGGCAATTGGACG
GCCTGCAGCAGGAGCTGCGGCCTTGGCACCGCCACGCGGCACACCACCAC
CCACGCGGGCTGCCATCAACTGAGCAATTTGCGGCTCTGCGAGAATCGCA
GGTGCGACAAGGACGACCACGAGGACAATAAGTGGAGCAGGAGCCGCCCG
TTGACGCACAAGCGGAAGCAGCATCGCGCCCACAGCCACTCCCATCAGCG
TTATCATCACCACAAGGAGCACGAGGAGCCGGCCCACAGGATACGAAAGG
GCCACGAGTGTCGGAGCATCCAGCGCCTAGGTCCTGCCAGGATACGACTG
GGCGAGTGCGTTTCCCGAAAGCTGTATCGACCGAAGCTCTGTGGCCGTTG
CCATCGCGGGGTCAAATGCTGTGCCCCGGCGGTATCCACTACGATACAGG
TTGAGTTGCTGTGTCCTTTAAATGCTGTCGATCCAATTAACTACGTACAG
CGACGTCAAGCGAACAAAAAA
BO08253.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32183-PB | 1413 | Ccn-RB | 1..855 | 17..871 | 4275 | 100 | Plus |
| CG32183-PA | 1125 | Ccn-RA | 1..783 | 17..799 | 3915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:37:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ccn-RB | 2778 | CG32183-RB | 551..1405 | 17..871 | 4275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:37:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17729583..17729873 | 356..646 | 1455 | 100 | Plus |
| 3L | 28110227 | 3L | 17730189..17730343 | 647..801 | 775 | 100 | Plus |
| 3L | 28110227 | 3L | 17723139..17723285 | 210..356 | 735 | 100 | Plus |
| 3L | 28110227 | 3L | 17715970..17716062 | 17..109 | 465 | 100 | Plus |
| 3L | 28110227 | 3L | 17721808..17721888 | 131..211 | 405 | 100 | Plus |
| 3L | 28110227 | 3L | 17738636..17738710 | 797..871 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:37:47 has no hits.
BO08253.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:16 Download gff for
BO08253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccn-PB | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:34:32 Download gff for
BO08253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32183-PB | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:28:11 Download gff for
BO08253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccn-RB | 543..1399 | 9..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:52:37 Download gff for
BO08253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccn-RB | 543..1399 | 9..865 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:52:37 Download gff for
BO08253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17715964..17716062 | 9..109 | 96 | -> | Plus |
| 3L | 17716164..17716185 | 110..131 | 100 | -> | Plus |
| 3L | 17721809..17721888 | 132..211 | 100 | -> | Plus |
| 3L | 17723141..17723285 | 212..356 | 100 | -> | Plus |
| 3L | 17729584..17729873 | 357..646 | 100 | -> | Plus |
| 3L | 17730189..17730341 | 647..799 | 100 | -> | Plus |
| 3L | 17738639..17738704 | 800..865 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:28:11 Download gff for
BO08253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17709064..17709162 | 9..109 | 96 | -> | Plus |
| arm_3L | 17709264..17709285 | 110..131 | 100 | -> | Plus |
| arm_3L | 17714909..17714988 | 132..211 | 100 | -> | Plus |
| arm_3L | 17716241..17716385 | 212..356 | 100 | -> | Plus |
| arm_3L | 17722684..17722973 | 357..646 | 100 | -> | Plus |
| arm_3L | 17723289..17723441 | 647..799 | 100 | -> | Plus |
| arm_3L | 17731739..17731804 | 800..865 | 100 | | Plus |
BO08253.complete Sequence
1444 bp (1444 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631124
> BO08253.complete
GAAGTTATCAGTCGACATGCTGATACTGCTGCCGCTGCTTGGAATTTTTG
GTAATGGTTTCGTTGCTGAAGTCGAGGCAAATCTAAGTCTGGGCTTTAAG
GCCATCAAATTGCCCAGGCATCCGAATCCGGCCAATTGCAGTGTGGGCAA
CACAACATTCGCACATGGAGTCACATTCAAATTGGATTGTAAAACCCAAT
GCGTTTGCGAGAATGGCCGCCACGCCTGCTCCACGCTCTGCCCCAATGAG
CAGCTCCCGGCGCCGGAGGACACGATTTCATGCCGATCGCCGCGCCTCGT
CGAAGTTCCCGGCCACTGTTGCAAGATGTGGCTATGTGAGAATCCAACAG
CTGATGTTTACGCCACCTGCCACAACAGCACCACCAGCGGCAATTGGACG
GCCTGCAGCAGGAGCTGCGGCCTTGGCACCGCCACGCGGCACACCACCAC
CCACGCGGGCTGCCATCAACTGAGCAATTTGCGGCTCTGCGAGAATCGCA
GGTGCGACAAGGACGACCACGAGGACAATAAGTGGAGCAGGAGCCGCCCG
TTGACGCACAAGCGGAAGCAGCATCGCGCCCACAGCCACTCCCATCAGCG
TTATCATCACCACAAGGAGCACGAGGAGCCGGCCCACAGGATACGAAAGG
GCCACGAGTGTCGGAGCATCCAGCGCCTAGGTCCTGCCAGGATACGACTG
GGCGAGTGCGTTTCCCGAAAGCTGTATCGACCGAAGCTCTGTGGCCGTTG
CCATCGCGGGGTCAAATGCTGTGCCCCGGCGGTATCCACTACGATACAGG
TTGAGTTGCTGTGTCCTTTAAATGCTGTCGATCCAATTAACTACGTACAG
CGACGTCAAGCGAACAAAAAAAGGCAGATGAAGGAGCCCCAGGATGATGA
AGATGATGATGATGATGATGATGGGGATGATAATGTGGAGCCTGAGCCGG
TGCTGCAAAGTGCACAGTTATGGGACACGGTCGCCTTGGAGCCAATCGAT
CAGGAATTCCTGCAATCACATCAGATACAAATCGAGAATAAATTCATTGC
CGTCGAATGGATACTGAAATGTGAATGCAGCACGAAGAATTGCAACGCGG
GCAGCAGCAACATTAGTAGCAACAGCAACAGCAACGACAATATGGCTAAC
ACGAATAAATATGGTTATTACAATTACAAAAACAATAACCGAGGCCGGAA
CCACGAAACTAATGGCGAACCAAATGAGCCGACCAACAACAATGCTGGCA
ACAACAAGGACAACGAAGAGGATGTGGTCGACAGCGGCAACAACCTCGAC
CACAACGATGTGGACAACATGTCCTCGGAACAGCAGCCGGATATTATACC
CTATCCGCCAAGTGTGGGCGAATCCAGTTGGAAGGCCGAAAAGTTGCGAC
AGCAGCACCACTGGCAGCAAAACACAGCAAGCTTTCTAGACCAT
BO08253.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:33:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ccn-RB | 1413 | CG32183-PB | 1..1410 | 17..1426 | 7050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:33:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ccn-RB | 2778 | CG32183-RB | 551..1960 | 17..1426 | 7050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:33:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17747681..17748021 | 1086..1426 | 1705 | 100 | Plus |
| 3L | 28110227 | 3L | 17729583..17729873 | 356..646 | 1455 | 100 | Plus |
| 3L | 28110227 | 3L | 17738636..17738926 | 797..1087 | 1455 | 100 | Plus |
| 3L | 28110227 | 3L | 17730189..17730343 | 647..801 | 775 | 100 | Plus |
| 3L | 28110227 | 3L | 17723139..17723285 | 210..356 | 735 | 100 | Plus |
| 3L | 28110227 | 3L | 17715970..17716062 | 17..109 | 465 | 100 | Plus |
| 3L | 28110227 | 3L | 17721808..17721888 | 131..211 | 405 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 08:33:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2768..3004 | 1101..1341 | 193 | 57.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2294..2540 | 1059..1305 | 181 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6923 | 1077..1264 | 174 | 56.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2630 | 1101..1430 | 173 | 53.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..7083 | 1078..1341 | 168 | 55.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2401 | 1078..1142 | 162 | 73.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2388..2625 | 1078..1306 | 159 | 55.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6705..6904 | 1058..1269 | 158 | 56.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1094..1200 | 1075..1184 | 155 | 62.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1069..1131 | 1077..1139 | 153 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6828 | 1078..1130 | 148 | 75.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6927 | 1103..1299 | 147 | 57.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2354..2530 | 1077..1256 | 145 | 55.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2780..2998 | 1074..1304 | 145 | 56.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6842..6888 | 1093..1139 | 136 | 76.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6835..6897 | 1077..1139 | 135 | 68.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6822 | 1077..1142 | 132 | 66.7 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3284..3323 | 1101..1140 | 128 | 80 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2459..2521 | 1077..1139 | 126 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..6846 | 1078..1139 | 123 | 69.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1514..1579 | 1074..1142 | 122 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2846..3004 | 1101..1272 | 117 | 60 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1087..1149 | 1077..1142 | 115 | 68.2 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3269..3319 | 1092..1142 | 111 | 68.6 | Plus |
BO08253.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:47 Download gff for
BO08253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccn-RB | 1..1413 | 17..1427 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:56:41 Download gff for
BO08253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccn-RB | 551..1960 | 17..1428 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:46 Download gff for
BO08253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccn-RB | 551..1960 | 17..1428 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:47 Download gff for
BO08253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccn-RB | 543..1964 | 9..1432 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:36 Download gff for
BO08253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccn-RB | 551..1960 | 17..1428 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:36 Download gff for
BO08253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17715970..17716062 | 17..109 | 100 | -> | Plus |
| 3L | 17716164..17716185 | 110..131 | 100 | -> | Plus |
| 3L | 17721809..17721888 | 132..211 | 100 | -> | Plus |
| 3L | 17723141..17723285 | 212..356 | 100 | -> | Plus |
| 3L | 17729584..17729873 | 357..646 | 100 | -> | Plus |
| 3L | 17730189..17730341 | 647..799 | 100 | -> | Plus |
| 3L | 17738639..17738926 | 800..1087 | 100 | -> | Plus |
| 3L | 17747683..17748021 | 1088..1428 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:46 Download gff for
BO08253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17709070..17709162 | 17..109 | 100 | -> | Plus |
| arm_3L | 17709264..17709285 | 110..131 | 100 | -> | Plus |
| arm_3L | 17714909..17714988 | 132..211 | 100 | -> | Plus |
| arm_3L | 17716241..17716385 | 212..356 | 100 | -> | Plus |
| arm_3L | 17722684..17722973 | 357..646 | 100 | -> | Plus |
| arm_3L | 17723289..17723441 | 647..799 | 100 | -> | Plus |
| arm_3L | 17731739..17732026 | 800..1087 | 100 | -> | Plus |
| arm_3L | 17740783..17741121 | 1088..1428 | 99 | | Plus |
BO08253.pep Sequence
Translation from 16 to 1444
> BO08253.pep
MLILLPLLGIFGNGFVAEVEANLSLGFKAIKLPRHPNPANCSVGNTTFAH
GVTFKLDCKTQCVCENGRHACSTLCPNEQLPAPEDTISCRSPRLVEVPGH
CCKMWLCENPTADVYATCHNSTTSGNWTACSRSCGLGTATRHTTTHAGCH
QLSNLRLCENRRCDKDDHEDNKWSRSRPLTHKRKQHRAHSHSHQRYHHHK
EHEEPAHRIRKGHECRSIQRLGPARIRLGECVSRKLYRPKLCGRCHRGVK
CCAPAVSTTIQVELLCPLNAVDPINYVQRRQANKKRQMKEPQDDEDDDDD
DDGDDNVEPEPVLQSAQLWDTVALEPIDQEFLQSHQIQIENKFIAVEWIL
KCECSTKNCNAGSSNISSNSNSNDNMANTNKYGYYNYKNNNRGRNHETNG
EPNEPTNNNAGNNKDNEEDVVDSGNNLDHNDVDNMSSEQQPDIIPYPPSV
GESSWKAEKLRQQHHWQQNTASFLDH
BO08253.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:20:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ccn-PB | 470 | CG32183-PB | 1..470 | 1..470 | 2623 | 100 | Plus |
