Clone Sequence Records
BO08254.3prime Sequence
923 bp (791 high quality bases) assembled on 2006-01-06
> BO08254.3prime
ATGGTCTAGAAAGCTTGCGAACTTGGAGTCATCGTTTCGGTGGACATGTC
GTCGCTTGCGACCGTTGCAGTGGCGTCCATAGAATCCCGGATGGCACTTG
CAGTGCTTGTGGGAGACGCAGGTGCCATTGCGACACTTGCAGATGGAGCG
CTGCTTGCGCCCGATCTCGCAGTGATCGCCTCGTAGTCCGTTGGGGCAGC
GGCACAGGTTGTTCCCGATGCACCGTCCCTCGTTCTTGCAGGGGATCACA
CACTTGGAGTACTCGCAACGCAGGCCGTAGTAACCCTTGGAGCACTGGCA
CTTGTCCTTCTGTATACACTTGCCGCCATTCAAGCACTTGTCCTTGCAAA
TACCACCTTCGCACTGCGTGCCCTGGTAGCCCTCCGGACAGGTGCAGACG
GACGGCGCCGTGCAGTTACCGCCATTGAGACACTGCGGAAAACAGAAGGC
CGTCTCGCAGTATTGGCCCGTGTAGCCCACGTTGCACTTGCAGATGTGGT
GCTCGTTGCAGTACCCGTTCTTGCCGCACTTCAAGCTGCATTCTTGCAAA
GTTGTTAGTGAAGTAGGGTTGGAAGCGTCTATATCATACACACCTCTGTG
GGCGCATTCCTTTTTGAAGTTGAGGCGAATGGGTGTGCCCGAGAGCGGCT
TGTTGTGGCGCGTCTGGATCTTGAGGCCGACGTTGAAGGACGCGGTGCCG
GAGCTGTTGCCGGTGCAGGGCAGGAATATGCTAAAATTTTTCTGCTCCTG
CGGAATGCGTCCGCTCTTGCGAATGGACAGCGTTGGCGCCTTCAAGATAC
TTTCATCCATGGTCTGCAGGCGGTCAAAGTCGTAGAAGTATTTGCGGCGC
CCCGACTTCCATGTGAAGTTAACGTAGTTGACCTCCGATGGGATTACCAG
GAAGTGTACAGCGTCGTGTCCCT
BO08254.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3135-PA | 1371 | shf-RA | 482..1368 | 905..19 | 4435 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:41:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
shf-RA | 1784 | CG3135-RA | 723..1628 | 923..19 | 4505 | 99.9 | Minus |
shf-RB | 1796 | CG3135-RB | 723..1640 | 923..19 | 4375 | 98.6 | Minus |
shf-RD | 1745 | CG3135-RD | 1064..1589 | 544..19 | 2630 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:41:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6771732..6771934 | 55..257 | 1000 | 99.5 | Plus |
X | 23542271 | X | 6773915..6774109 | 543..737 | 975 | 100 | Plus |
X | 23542271 | X | 6773058..6773251 | 351..544 | 970 | 100 | Plus |
X | 23542271 | X | 6774183..6774369 | 738..923 | 885 | 99.5 | Plus |
X | 23542271 | X | 6772005..6772101 | 258..354 | 485 | 100 | Plus |
X | 23542271 | X | 6771619..6771659 | 19..59 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:41:03 has no hits.
BO08254.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:17 Download gff for
BO08254.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
shf-PA | 463..1371 | 18..923 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:34:33 Download gff for
BO08254.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3135-PA | 463..1371 | 18..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:39:33 Download gff for
BO08254.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
shf-RA | 723..1628 | 19..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:15:46 Download gff for
BO08254.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
shf-RA | 723..1628 | 19..923 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:46 Download gff for
BO08254.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6774183..6774369 | 738..923 | 99 | | Plus |
X | 6771619..6771659 | 19..59 | 100 | <- | Plus |
X | 6771737..6771934 | 60..257 | 100 | <- | Plus |
X | 6772005..6772100 | 258..353 | 100 | <- | Plus |
X | 6773061..6773249 | 354..542 | 100 | <- | Plus |
X | 6773915..6774109 | 543..737 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:39:33 Download gff for
BO08254.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6665770..6665967 | 60..257 | 100 | <- | Plus |
arm_X | 6666038..6666133 | 258..353 | 100 | <- | Plus |
arm_X | 6665652..6665692 | 19..59 | 100 | <- | Plus |
arm_X | 6667094..6667282 | 354..542 | 100 | <- | Plus |
arm_X | 6667948..6668142 | 543..737 | 100 | <- | Plus |
arm_X | 6668216..6668402 | 738..923 | 99 | | Plus |
BO08254.5prime Sequence
900 bp (829 high quality bases) assembled on 2006-01-06
> BO08254.5prime
GAAGTTATCAGTCGACATGACACATCAGGGCATCGGCTGCCTGGTCAAGT
GGTTATATCTGGTGCTGATCGTGCACACGCTCCTCTGCATCGGCCAGCTC
GAGTGTCGCCAGCAGCACCACAATCGGAATAACAATAATAATAACAGAAG
AGCGGACTCGTCCAGCTCAGAGGAGGGCCACGGCAACACCAGCGATGGCC
TGGACAACTTCGCAGATCAGGACGCCAGCTTCGTTGGCCATGGACACCAG
CCGCGTCGGGGTCAACGAAAGAAACAGCAGGGAGGTGGAGGAGGAGGCAG
CGGCGGCGGCGGCGGAAACGGAGGAGGCGGTGGAAGCCGGCACAATCGCA
ACGAGGAGAGCGGCATCTCGTTGTGGATCAATGAGCAGCAGCTCAAAATG
CTTACAGCGCTCTACTTCCCACAGGGCTACTCGGAGCGCCTGTACGCCAT
TCACAACAGCCGGGTGACCAATGATCTGAGGGACACGACGCTGTACAACT
TCCTGGTAATCCCATCGGAGGTCAACTACGTTAACTTCACATGGAAGTCG
GGGCGCCGCAAATACTTCTACGACTTTGACCGCCTGCAGACCATGGATGA
AAGTATCTTGAAGGCGCCAACGCTGTCCATTCGCAAGAGCGGACGCATTC
CGCAGGAGCAGAAAAATTTTAGCATATTCCTGCCCTGCACCGGCAACAGC
TCCGGCACCGCGTCCTTCAACGTCGGCCTCAAGATCCAGACGCGCCACAA
CAAGCCGCTCTCGGGCACACCCATTCGCCTCAACTTCAAAAAGGAATGCG
CCCACAGAGGTGTGTATGATATAGACGCTTCCNACCCTACTTCACTAACA
AACTTTGCAGAATGCAGCTTGAAGTGCGGCAAGAACGGGTACTGCAACGA
BO08254.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3135-PA | 1371 | shf-RA | 1..835 | 17..851 | 4156 | 99.8 | Plus |
CG3135-PA | 1371 | shf-RA | 843..884 | 859..900 | 210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:53:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
shf-RA | 1784 | CG3135-RA | 261..1144 | 17..900 | 4364 | 99.7 | Plus |
shf-RB | 1796 | CG3135-RB | 261..1156 | 17..900 | 4244 | 98.3 | Plus |
shf-RD | 1745 | CG3135-RD | 261..1053 | 17..809 | 3965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:53:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6774561..6774951 | 407..17 | 1955 | 100 | Minus |
X | 23542271 | X | 6774183..6774444 | 665..404 | 1310 | 100 | Minus |
X | 23542271 | X | 6773924..6774109 | 851..666 | 919 | 99.5 | Minus |
X | 23542271 | X | 6773210..6773252 | 900..858 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 15:53:01 has no hits.
BO08254.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:18 Download gff for
BO08254.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
shf-PA | 1..883 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:34:35 Download gff for
BO08254.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3135-PA | 1..883 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:10:15 Download gff for
BO08254.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
shf-RA | 261..1143 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:25:36 Download gff for
BO08254.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
shf-RA | 261..1143 | 17..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:25:36 Download gff for
BO08254.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6773211..6773249 | 861..899 | 100 | <- | Minus |
X | 6773915..6774109 | 666..860 | 98 | <- | Minus |
X | 6774183..6774440 | 408..665 | 100 | <- | Minus |
X | 6774561..6774951 | 17..407 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:10:15 Download gff for
BO08254.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6667244..6667282 | 861..899 | 100 | <- | Minus |
arm_X | 6667948..6668142 | 666..860 | 98 | <- | Minus |
arm_X | 6668216..6668473 | 408..665 | 100 | <- | Minus |
arm_X | 6668594..6668984 | 17..407 | 100 | | Minus |
BO08254.complete Sequence
1402 bp (1402 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631125
> BO08254.complete
GAAGTTATCAGTCGACATGACACATCAGGGCATCGGCTGCCTGGTCAAGT
GGTTATATCTGGTGCTGATCGTGCACACGCTCCTCTGCATCGGCCAGCTC
GAGTGTCGCCAGCAGCACCACAATCGGAATAACAATAATAATAACAGAAG
AGCGGACTCGTCCAGCTCAGAGGAGGGCCACGGCAACACCAGCGATGGCC
TGGACAACTTCGCAGATCAGGACGCCAGCTTCGTTGGCCATGGACACCAG
CCGCGTCGGGGTCAACGAAAGAAACAGCAGGGAGGTGGAGGAGGAGGCAG
CGGCGGCGGCGGCGGAAACGGAGGAGGCGGTGGAAGCCGGCACAATCGCA
ACGAGGAGAGCGGCATCTCGTTGTGGATCAATGAGCAGCAGCTCAAAATG
CTTACAGCGCTCTACTTCCCACAGGGCTACTCGGAGCGCCTGTACGCCAT
TCACAACAGCCGGGTGACCAATGATCTGAGGGACACGACGCTGTACAACT
TCCTGGTAATCCCATCGGAGGTCAACTACGTTAACTTCACATGGAAGTCG
GGGCGCCGCAAATACTTCTACGACTTTGACCGCCTGCAGACCATGGATGA
AAGTATCTTGAAGGCGCCAACGCTGTCCATTCGCAAGAGCGGACGCATTC
CGCAGGAGCAGAAAAATTTTAGCATATTCCTGCCCTGCACCGGCAACAGC
TCCGGCACCGCGTCCTTCAACGTCGGCCTCAAGATCCAGACGCGCCACAA
CAAGCCGCTCTCGGGCACACCCATTCGCCTCAACTTCAAAAAGGAATGCG
CCCACAGAGGTGTGTATGATATAGACGCTTCCAACCCTACTTCACTAACA
ACTTTGCAAGAATGCAGCTTGAAGTGCGGCAAGAACGGGTACTGCAACGA
GCACCACATCTGCAAGTGCAACGTGGGCTACACGGGCCAATACTGCGAGA
CGGCCTTCTGTTTTCCGCAGTGTCTCAATGGCGGTAACTGCACGGCGCCG
TCCGTCTGCACCTGTCCGGAGGGCTACCAGGGCACGCAGTGCGAAGGTGG
TATTTGCAAGGACAAGTGCTTGAATGGCGGCAAGTGTATACAGAAGGACA
AGTGCCAGTGCTCCAAGGGTTACTACGGCCTGCGTTGCGAGTACTCCAAG
TGTGTGATCCCCTGCAAGAACGAGGGACGGTGCATCGGGAACAACCTGTG
CCGCTGCCCCAACGGACTACGAGGCGATCACTGCGAGATCGGGCGCAAGC
AGCGCTCCATCTGCAAGTGTCGCAATGGCACCTGCGTCTCCCACAAGCAC
TGCAAGTGCCATCCGGGATTCTATGGACGCCACTGCAACGGTCGCAAGCG
ACGACATGTCCACCGAAACGATGACTCCAAGTTCGCAAGCTTTCTAGACC
AT
BO08254.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:03:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
shf-RA | 1371 | CG3135-PA | 1..1368 | 17..1384 | 6840 | 100 | Plus |
shf-RB | 1383 | CG3135-PB | 1..1380 | 17..1384 | 6685 | 99.1 | Plus |
shf-RD | 1332 | CG3135-PD | 1..793 | 17..809 | 3965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:03:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
shf-RA | 1784 | CG3135-RA | 261..1628 | 17..1384 | 6840 | 100 | Plus |
shf-RB | 1796 | CG3135-RB | 261..1640 | 17..1384 | 6685 | 99.1 | Plus |
shf-RD | 1745 | CG3135-RD | 261..1053 | 17..809 | 3965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:03:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6774561..6774951 | 407..17 | 1955 | 100 | Minus |
X | 23542271 | X | 6774183..6774444 | 665..404 | 1310 | 100 | Minus |
X | 23542271 | X | 6771732..6771934 | 1348..1146 | 1000 | 99.5 | Minus |
X | 23542271 | X | 6773915..6774109 | 860..666 | 975 | 100 | Minus |
X | 23542271 | X | 6773058..6773251 | 1052..859 | 970 | 100 | Minus |
X | 23542271 | X | 6772005..6772101 | 1145..1049 | 485 | 100 | Minus |
X | 23542271 | X | 6771619..6771659 | 1384..1344 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:03:03 has no hits.
BO08254.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:48 Download gff for
BO08254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
shf-RA | 1..1371 | 17..1385 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:31:27 Download gff for
BO08254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
shf-RA | 261..1628 | 17..1384 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:28:31 Download gff for
BO08254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
shf-RA | 261..1628 | 17..1386 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:48 Download gff for
BO08254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
shf-RA | 261..1628 | 17..1384 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:09:59 Download gff for
BO08254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
shf-RA | 261..1628 | 17..1386 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:09:59 Download gff for
BO08254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6771617..6771659 | 1344..1386 | 95 | <- | Minus |
X | 6771737..6771934 | 1146..1343 | 100 | <- | Minus |
X | 6772005..6772100 | 1050..1145 | 100 | <- | Minus |
X | 6773061..6773249 | 861..1049 | 100 | <- | Minus |
X | 6773915..6774109 | 666..860 | 100 | <- | Minus |
X | 6774183..6774440 | 408..665 | 100 | <- | Minus |
X | 6774561..6774951 | 17..407 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:28:31 Download gff for
BO08254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6668216..6668473 | 408..665 | 100 | <- | Minus |
arm_X | 6668594..6668984 | 17..407 | 100 | | Minus |
arm_X | 6665650..6665692 | 1344..1386 | 95 | <- | Minus |
arm_X | 6665770..6665967 | 1146..1343 | 100 | <- | Minus |
arm_X | 6666038..6666133 | 1050..1145 | 100 | <- | Minus |
arm_X | 6667094..6667282 | 861..1049 | 100 | <- | Minus |
arm_X | 6667948..6668142 | 666..860 | 100 | <- | Minus |
BO08254.pep Sequence
Translation from 16 to 1402
> BO08254.pep
MTHQGIGCLVKWLYLVLIVHTLLCIGQLECRQQHHNRNNNNNNRRADSSS
SEEGHGNTSDGLDNFADQDASFVGHGHQPRRGQRKKQQGGGGGGSGGGGG
NGGGGGSRHNRNEESGISLWINEQQLKMLTALYFPQGYSERLYAIHNSRV
TNDLRDTTLYNFLVIPSEVNYVNFTWKSGRRKYFYDFDRLQTMDESILKA
PTLSIRKSGRIPQEQKNFSIFLPCTGNSSGTASFNVGLKIQTRHNKPLSG
TPIRLNFKKECAHRGVYDIDASNPTSLTTLQECSLKCGKNGYCNEHHICK
CNVGYTGQYCETAFCFPQCLNGGNCTAPSVCTCPEGYQGTQCEGGICKDK
CLNGGKCIQKDKCQCSKGYYGLRCEYSKCVIPCKNEGRCIGNNLCRCPNG
LRGDHCEIGRKQRSICKCRNGTCVSHKHCKCHPGFYGRHCNGRKRRHVHR
NDDSKFASFLDH
BO08254.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:20:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
shf-PA | 456 | CG3135-PA | 1..456 | 1..456 | 2579 | 100 | Plus |
shf-PB | 460 | CG3135-PB | 1..460 | 1..456 | 2564 | 99.1 | Plus |
shf-PD | 443 | CG3135-PD | 1..443 | 1..456 | 2469 | 96.7 | Plus |
shf-PC | 439 | CG3135-PC | 1..439 | 1..456 | 2465 | 96.3 | Plus |
NimB2-PA | 421 | CG31839-PA | 215..372 | 280..435 | 284 | 38 | Plus |