Clone Sequence Records
BO08256.3prime Sequence
913 bp (826 high quality bases) assembled on 2006-01-06
> BO08256.3prime
ATGGTCTAGAAAGCTTGCAGCGTTCGACTCCTTCAGATTTTGCAAACGTG
CCAATTGATTTGAGTCCAATTCCTCGGGTATGCTAGCTCGCCCACCGACC
ACCTGTTTGGGTGCCTCAATATCCTCATCGCCAGCCGCAGATCCAGATAC
TATTGCTTCTCCTGCTGCCTCTCCGTTGATGTCCAATTCGTTGGACTGCT
CCCCACCGCCACCTCCACCGCCCCCACCTCCTCCGATTCCAGCGAAGGCG
TCATCAAAATTGGCATCGAAGTTGGCCTCAAAATTGGCCTCAAATCCCGA
ACCGTCGCCGGACTCTCCCTTGGCCTTCTCGTTGAATGGATCCTCCGCAT
CCTGCAGTACCGGCACATCGGCAACCGAAGCCGAATCGGTGCCCTCCGAG
AAGGACTGTTGGTCCTCTGCATCACAGGATGGATACTCGGTCAGTGTAAT
GCTCACCACGGGCCTCACTCCAGCATTACCTTCTTTGGCCGGCGCGCTCT
GTGGCGCCACCTTGGCCAGCGGCTTGGGCGCAATATCTGGCTTTTTGGCC
ACTTCCGCCGGCTGCTCCTTGGACACCGGCTCCACTGGCTGTGCATCGCT
CTCGCCTACTGGTGGGAAAGATTTATCGGCACCGTCTTCAACCATGGGGG
TTGCAGCGGTAACAATTATTTGTGCCATACCTAAGTTCAGCGTGTTGGCG
CCACCTGCCGCCGCCCCCTTTTCGACCTTGCTCCCAGATCCAGGAGCGGA
TCCGCCCGCCTTCGCTAGTTGGGGCGGCGGCAAGGACGGCGGCGGCTGCC
CATCGTCACTGAGATCGTCCTCCATGCCAGGCTCTTGGATGAGTACTGAG
TATGCGTTAAAAATAATGAGAAAAGATTTGTTGGCTTAGTATCAATCATG
TCGACTGATAACT
BO08256.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4641-PA | 885 | CG4641-RA | 35..882 | 866..19 | 4240 | 100 | Minus |
CG4641-PA | 885 | CG4641-RA | 1..35 | 899..865 | 175 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:09:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nwk-RF | 5420 | CG43479-RF | 3173..4054 | 899..19 | 4385 | 99.9 | Minus |
nwk-RG | 4695 | CG43479-RG | 2500..3329 | 848..19 | 4150 | 100 | Minus |
nwk-RK | 4713 | CG43479-RK | 2518..3347 | 848..19 | 4150 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:08:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9143525..9144327 | 821..19 | 4015 | 100 | Minus |
3L | 28110227 | 3L | 9143243..9143324 | 899..819 | 360 | 98.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:09:01 has no hits.
BO08256.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:19 Download gff for
BO08256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4641-PA | 1..885 | 18..899 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:34:37 Download gff for
BO08256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4641-PA | 1..885 | 18..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:24:57 Download gff for
BO08256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nwk-RF | 3173..4060 | 11..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:26:35 Download gff for
BO08256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nwk-RF | 3173..4060 | 11..899 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:26:35 Download gff for
BO08256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9143243..9143323 | 820..899 | 98 | -> | Minus |
3L | 9143527..9144333 | 11..819 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:24:57 Download gff for
BO08256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9136343..9136423 | 820..899 | 98 | -> | Minus |
arm_3L | 9136627..9137433 | 11..819 | 99 | | Minus |
BO08256.5prime Sequence
914 bp (791 high quality bases) assembled on 2006-01-06
> BO08256.5prime
GAAGTTATCAGTCGACATGATTGATACTAAGCCAACAAATCTTTTCTCAT
TTATTTTTAACGCATACTCAGTACTCATCCAAGAGCCTGGCATGGAGGAC
GATCTCAGTGACGATGGGCAGCCGCCGCCGTCCTTGCCGCCGCCCCAACT
AGCGAAGGCGGGCGGATCCGCTCCTGGATCTGGGAGCAAGGTCGAAAAGG
GGGCGGCGGCAGGTGGCGCCAACACGCTGAACTTAGGTATGGCACAAATA
ATTGTTACCGCTGCAACCCCCATGGTTGAAGACGGTGCCGATAAATCTTT
CCCACCAGTAGGCGAGAGCGATGCACAGCCAGTGGAGCCGGTGTCCAAGG
AGCAGCCGGCGGAAGTGGCCAAAAAGCCAGATATTGCGCCCAAGCCGCTG
GCCAAGGTGGCGCCACAGAGCGCGCCGGCCAAAGAAGGTAATGCTGGAGT
GAGGCCCGTGGTGAGCATTACACTGACCGAGTATCCATCCTGTGATGCAG
AGGACCAACAGTCCTTCTCGGAGGGCACCGATTCGGCTTCGGTTGCCGAT
GTGCCGGTACTGCAGGATGCGGAGGATCCATTCAACGAGAAGGCCAAGGG
AGAGTCCGGCGACGGTTCGGGATTTGAGGCCAATTTTGAGGCCAACTTCG
ATGCCAATTTTGATGACGCCTTCGCTGGAATCGGAGGAGGTGGGGGCGGT
GGAGGTGGCGGTGGGGAGCAGTCCAACGAATTGGACATCAACGGAGAGGC
AGCAGGAGAAGCAATAGTATCTGGATCTGCGGCTGGCGATGAGGATATTG
AGGCACCCAAACAGGTGGTCGGTGGGCGAGCTAGCATACCCGAGGAATTG
GACTCAAATCAATTGGCACGTTTGCCAAATCTGAAGGAGTCGAACGCTGC
AAGCTTTCTAGACC
BO08256.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4641-PA | 885 | CG4641-RA | 1..882 | 17..898 | 4385 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:09:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nwk-RF | 5420 | CG43479-RF | 3173..4054 | 17..898 | 4395 | 99.9 | Plus |
nwk-RG | 4695 | CG43479-RG | 2500..3329 | 69..898 | 4135 | 99.9 | Plus |
nwk-RK | 4713 | CG43479-RK | 2518..3347 | 69..898 | 4135 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:09:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9143525..9144327 | 96..898 | 4000 | 99.9 | Plus |
3L | 28110227 | 3L | 9143243..9143324 | 17..98 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:09:11 has no hits.
BO08256.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:19 Download gff for
BO08256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4641-PA | 1..885 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:34:38 Download gff for
BO08256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4641-PA | 1..885 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:24:58 Download gff for
BO08256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nwk-RF | 3173..4060 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:26:38 Download gff for
BO08256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nwk-RF | 3173..4060 | 17..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:26:38 Download gff for
BO08256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9143243..9143323 | 17..97 | 100 | -> | Plus |
3L | 9143527..9144333 | 98..906 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:24:58 Download gff for
BO08256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9136343..9136423 | 17..97 | 100 | -> | Plus |
arm_3L | 9136627..9137433 | 98..906 | 99 | | Plus |
BO08256.complete Sequence
916 bp (916 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631126
> BO08256.complete
GAAGTTATCAGTCGACATGATTGATACTAAGCCAACAAATCTTTTCTCAT
TTATTTTTAACGCATACTCAGTACTCATCCAAGAGCCTGGCATGGAGGAC
GATCTCAGTGACGATGGGCAGCCGCCGCCGTCCTTGCCGCCGCCCCAACT
AGCGAAGGCGGGCGGATCCGCTCCTGGATCTGGGAGCAAGGTCGAAAAGG
GGGCGGCGGCAGGTGGCGCCAACACGCTGAACTTAGGTATGGCACAAATA
ATTGTTACCGCTGCAACCCCCATGGTTGAAGACGGTGCCGATAAATCTTT
CCCACCAGTAGGCGAGAGCGATGCACAGCCAGTGGAGCCGGTGTCCAAGG
AGCAGCCGGCGGAAGTGGCCAAAAAGCCAGATATTGCGCCCAAGCCGCTG
GCCAAGGTGGCGCCACAGAGCGCGCCGGCCAAAGAAGGTAATGCTGGAGT
GAGGCCCGTGGTGAGCATTACACTGACCGAGTATCCATCCTGTGATGCAG
AGGACCAACAGTCCTTCTCGGAGGGCACCGATTCGGCTTCGGTTGCCGAT
GTGCCGGTACTGCAGGATGCGGAGGATCCATTCAACGAGAAGGCCAAGGG
AGAGTCCGGCGACGGTTCGGGATTTGAGGCCAATTTTGAGGCCAACTTCG
ATGCCAATTTTGATGACGCCTTCGCTGGAATCGGAGGAGGTGGGGGCGGT
GGAGGTGGCGGTGGGGAGCAGTCCAACGAATTGGACATCAACGGAGAGGC
AGCAGGAGAAGCAATAGTATCTGGATCTGCGGCTGGCGATGAGGATATTG
AGGCACCCAAACAGGTGGTCGGTGGGCGAGCTAGCATACCCGAGGAATTG
GACTCAAATCAATTGGCACGTTTGCAAAATCTGAAGGAGTCGAACGCTGC
AAGCTTTCTAGACCAT
BO08256.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:55:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nwk-RG | 3207 | CG43479-PG | 2375..3204 | 69..898 | 4150 | 100 | Plus |
nwk-RK | 3150 | CG43479-PK | 2318..3147 | 69..898 | 4150 | 100 | Plus |
nwk-RD | 3207 | CG43479-PD | 2375..3204 | 69..898 | 4150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:55:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nwk-RF | 5420 | CG43479-RF | 3173..4054 | 17..898 | 4410 | 100 | Plus |
nwk-RG | 4695 | CG43479-RG | 2500..3329 | 69..898 | 4150 | 100 | Plus |
nwk-RK | 4713 | CG43479-RK | 2518..3347 | 69..898 | 4150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:55:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9143525..9144327 | 96..898 | 4015 | 100 | Plus |
3L | 28110227 | 3L | 9143243..9143324 | 17..98 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:55:04 has no hits.
BO08256.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:50 Download gff for
BO08256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4641-RA | 1..885 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:31:28 Download gff for
BO08256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4641-RA | 463..1350 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:40:44 Download gff for
BO08256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nwk-RF | 3173..4054 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:50 Download gff for
BO08256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4641-RA | 463..1350 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:45:49 Download gff for
BO08256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nwk-RF | 3173..4054 | 17..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:45:49 Download gff for
BO08256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9143243..9143323 | 17..97 | 100 | -> | Plus |
3L | 9143527..9144327 | 98..900 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:40:44 Download gff for
BO08256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9136343..9136423 | 17..97 | 100 | -> | Plus |
arm_3L | 9136627..9137427 | 98..900 | 99 | | Plus |
BO08256.pep Sequence
Translation from 16 to 916
> BO08256.pep
MIDTKPTNLFSFIFNAYSVLIQEPGMEDDLSDDGQPPPSLPPPQLAKAGG
SAPGSGSKVEKGAAAGGANTLNLGMAQIIVTAATPMVEDGADKSFPPVGE
SDAQPVEPVSKEQPAEVAKKPDIAPKPLAKVAPQSAPAKEGNAGVRPVVS
ITLTEYPSCDAEDQQSFSEGTDSASVADVPVLQDAEDPFNEKAKGESGDG
SGFEANFEANFDANFDDAFAGIGGGGGGGGGGGEQSNELDINGEAAGEAI
VSGSAAGDEDIEAPKQVVGGRASIPEELDSNQLARLQNLKESNAASFLDH
BO08256.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:19:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nwk-PK | 1049 | CG43479-PK | 773..1049 | 18..294 | 1412 | 99.6 | Plus |
nwk-PG | 1068 | CG43479-PG | 793..1068 | 19..294 | 1411 | 100 | Plus |
nwk-PD | 1068 | CG43479-PD | 793..1068 | 19..294 | 1411 | 100 | Plus |
nwk-PJ | 1056 | CG43479-PJ | 773..1039 | 18..284 | 1364 | 99.6 | Plus |
nwk-PI | 1075 | CG43479-PI | 793..1058 | 19..284 | 1363 | 100 | Plus |