Clone BO08256 Report

Search the DGRC for BO08256

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:82
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptCG4641-RA
Protein status:BO08256.pep: validated full length
Sequenced Size:916

Clone Sequence Records

BO08256.3prime Sequence

913 bp (826 high quality bases) assembled on 2006-01-06

> BO08256.3prime
ATGGTCTAGAAAGCTTGCAGCGTTCGACTCCTTCAGATTTTGCAAACGTG
CCAATTGATTTGAGTCCAATTCCTCGGGTATGCTAGCTCGCCCACCGACC
ACCTGTTTGGGTGCCTCAATATCCTCATCGCCAGCCGCAGATCCAGATAC
TATTGCTTCTCCTGCTGCCTCTCCGTTGATGTCCAATTCGTTGGACTGCT
CCCCACCGCCACCTCCACCGCCCCCACCTCCTCCGATTCCAGCGAAGGCG
TCATCAAAATTGGCATCGAAGTTGGCCTCAAAATTGGCCTCAAATCCCGA
ACCGTCGCCGGACTCTCCCTTGGCCTTCTCGTTGAATGGATCCTCCGCAT
CCTGCAGTACCGGCACATCGGCAACCGAAGCCGAATCGGTGCCCTCCGAG
AAGGACTGTTGGTCCTCTGCATCACAGGATGGATACTCGGTCAGTGTAAT
GCTCACCACGGGCCTCACTCCAGCATTACCTTCTTTGGCCGGCGCGCTCT
GTGGCGCCACCTTGGCCAGCGGCTTGGGCGCAATATCTGGCTTTTTGGCC
ACTTCCGCCGGCTGCTCCTTGGACACCGGCTCCACTGGCTGTGCATCGCT
CTCGCCTACTGGTGGGAAAGATTTATCGGCACCGTCTTCAACCATGGGGG
TTGCAGCGGTAACAATTATTTGTGCCATACCTAAGTTCAGCGTGTTGGCG
CCACCTGCCGCCGCCCCCTTTTCGACCTTGCTCCCAGATCCAGGAGCGGA
TCCGCCCGCCTTCGCTAGTTGGGGCGGCGGCAAGGACGGCGGCGGCTGCC
CATCGTCACTGAGATCGTCCTCCATGCCAGGCTCTTGGATGAGTACTGAG
TATGCGTTAAAAATAATGAGAAAAGATTTGTTGGCTTAGTATCAATCATG
TCGACTGATAACT

BO08256.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG4641-PA 885 CG4641-RA 35..882 866..19 4240 100 Minus
CG4641-PA 885 CG4641-RA 1..35 899..865 175 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:09:05
Subject Length Description Subject Range Query Range Score Percent Strand
nwk-RF 5420 CG43479-RF 3173..4054 899..19 4385 99.9 Minus
nwk-RG 4695 CG43479-RG 2500..3329 848..19 4150 100 Minus
nwk-RK 4713 CG43479-RK 2518..3347 848..19 4150 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9143525..9144327 821..19 4015 100 Minus
3L 28110227 3L 9143243..9143324 899..819 360 98.8 Minus
Blast to na_te.dros performed on 2015-02-11 03:09:01 has no hits.

BO08256.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:19 Download gff for BO08256.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4641-PA 1..885 18..899 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:34:37 Download gff for BO08256.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4641-PA 1..885 18..899 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:24:57 Download gff for BO08256.3prime
Subject Subject Range Query Range Percent Splice Strand
nwk-RF 3173..4060 11..899 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:26:35 Download gff for BO08256.3prime
Subject Subject Range Query Range Percent Splice Strand
nwk-RF 3173..4060 11..899 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:26:35 Download gff for BO08256.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9143243..9143323 820..899 98 -> Minus
3L 9143527..9144333 11..819 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:24:57 Download gff for BO08256.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9136343..9136423 820..899 98 -> Minus
arm_3L 9136627..9137433 11..819 99   Minus

BO08256.5prime Sequence

914 bp (791 high quality bases) assembled on 2006-01-06

> BO08256.5prime
GAAGTTATCAGTCGACATGATTGATACTAAGCCAACAAATCTTTTCTCAT
TTATTTTTAACGCATACTCAGTACTCATCCAAGAGCCTGGCATGGAGGAC
GATCTCAGTGACGATGGGCAGCCGCCGCCGTCCTTGCCGCCGCCCCAACT
AGCGAAGGCGGGCGGATCCGCTCCTGGATCTGGGAGCAAGGTCGAAAAGG
GGGCGGCGGCAGGTGGCGCCAACACGCTGAACTTAGGTATGGCACAAATA
ATTGTTACCGCTGCAACCCCCATGGTTGAAGACGGTGCCGATAAATCTTT
CCCACCAGTAGGCGAGAGCGATGCACAGCCAGTGGAGCCGGTGTCCAAGG
AGCAGCCGGCGGAAGTGGCCAAAAAGCCAGATATTGCGCCCAAGCCGCTG
GCCAAGGTGGCGCCACAGAGCGCGCCGGCCAAAGAAGGTAATGCTGGAGT
GAGGCCCGTGGTGAGCATTACACTGACCGAGTATCCATCCTGTGATGCAG
AGGACCAACAGTCCTTCTCGGAGGGCACCGATTCGGCTTCGGTTGCCGAT
GTGCCGGTACTGCAGGATGCGGAGGATCCATTCAACGAGAAGGCCAAGGG
AGAGTCCGGCGACGGTTCGGGATTTGAGGCCAATTTTGAGGCCAACTTCG
ATGCCAATTTTGATGACGCCTTCGCTGGAATCGGAGGAGGTGGGGGCGGT
GGAGGTGGCGGTGGGGAGCAGTCCAACGAATTGGACATCAACGGAGAGGC
AGCAGGAGAAGCAATAGTATCTGGATCTGCGGCTGGCGATGAGGATATTG
AGGCACCCAAACAGGTGGTCGGTGGGCGAGCTAGCATACCCGAGGAATTG
GACTCAAATCAATTGGCACGTTTGCCAAATCTGAAGGAGTCGAACGCTGC
AAGCTTTCTAGACC

BO08256.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG4641-PA 885 CG4641-RA 1..882 17..898 4385 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:09:13
Subject Length Description Subject Range Query Range Score Percent Strand
nwk-RF 5420 CG43479-RF 3173..4054 17..898 4395 99.9 Plus
nwk-RG 4695 CG43479-RG 2500..3329 69..898 4135 99.9 Plus
nwk-RK 4713 CG43479-RK 2518..3347 69..898 4135 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:09:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9143525..9144327 96..898 4000 99.9 Plus
3L 28110227 3L 9143243..9143324 17..98 410 100 Plus
Blast to na_te.dros performed on 2015-02-11 03:09:11 has no hits.

BO08256.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:19 Download gff for BO08256.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4641-PA 1..885 17..899 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:34:38 Download gff for BO08256.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4641-PA 1..885 17..899 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:24:58 Download gff for BO08256.5prime
Subject Subject Range Query Range Percent Splice Strand
nwk-RF 3173..4060 17..906 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:26:38 Download gff for BO08256.5prime
Subject Subject Range Query Range Percent Splice Strand
nwk-RF 3173..4060 17..906 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:26:38 Download gff for BO08256.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9143243..9143323 17..97 100 -> Plus
3L 9143527..9144333 98..906 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:24:58 Download gff for BO08256.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9136343..9136423 17..97 100 -> Plus
arm_3L 9136627..9137433 98..906 99   Plus

BO08256.complete Sequence

916 bp (916 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ631126

> BO08256.complete
GAAGTTATCAGTCGACATGATTGATACTAAGCCAACAAATCTTTTCTCAT
TTATTTTTAACGCATACTCAGTACTCATCCAAGAGCCTGGCATGGAGGAC
GATCTCAGTGACGATGGGCAGCCGCCGCCGTCCTTGCCGCCGCCCCAACT
AGCGAAGGCGGGCGGATCCGCTCCTGGATCTGGGAGCAAGGTCGAAAAGG
GGGCGGCGGCAGGTGGCGCCAACACGCTGAACTTAGGTATGGCACAAATA
ATTGTTACCGCTGCAACCCCCATGGTTGAAGACGGTGCCGATAAATCTTT
CCCACCAGTAGGCGAGAGCGATGCACAGCCAGTGGAGCCGGTGTCCAAGG
AGCAGCCGGCGGAAGTGGCCAAAAAGCCAGATATTGCGCCCAAGCCGCTG
GCCAAGGTGGCGCCACAGAGCGCGCCGGCCAAAGAAGGTAATGCTGGAGT
GAGGCCCGTGGTGAGCATTACACTGACCGAGTATCCATCCTGTGATGCAG
AGGACCAACAGTCCTTCTCGGAGGGCACCGATTCGGCTTCGGTTGCCGAT
GTGCCGGTACTGCAGGATGCGGAGGATCCATTCAACGAGAAGGCCAAGGG
AGAGTCCGGCGACGGTTCGGGATTTGAGGCCAATTTTGAGGCCAACTTCG
ATGCCAATTTTGATGACGCCTTCGCTGGAATCGGAGGAGGTGGGGGCGGT
GGAGGTGGCGGTGGGGAGCAGTCCAACGAATTGGACATCAACGGAGAGGC
AGCAGGAGAAGCAATAGTATCTGGATCTGCGGCTGGCGATGAGGATATTG
AGGCACCCAAACAGGTGGTCGGTGGGCGAGCTAGCATACCCGAGGAATTG
GACTCAAATCAATTGGCACGTTTGCAAAATCTGAAGGAGTCGAACGCTGC
AAGCTTTCTAGACCAT

BO08256.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:55:05
Subject Length Description Subject Range Query Range Score Percent Strand
nwk-RG 3207 CG43479-PG 2375..3204 69..898 4150 100 Plus
nwk-RK 3150 CG43479-PK 2318..3147 69..898 4150 100 Plus
nwk-RD 3207 CG43479-PD 2375..3204 69..898 4150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:55:06
Subject Length Description Subject Range Query Range Score Percent Strand
nwk-RF 5420 CG43479-RF 3173..4054 17..898 4410 100 Plus
nwk-RG 4695 CG43479-RG 2500..3329 69..898 4150 100 Plus
nwk-RK 4713 CG43479-RK 2518..3347 69..898 4150 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:55:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9143525..9144327 96..898 4015 100 Plus
3L 28110227 3L 9143243..9143324 17..98 410 100 Plus
Blast to na_te.dros performed on 2014-11-26 21:55:04 has no hits.

BO08256.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:50 Download gff for BO08256.complete
Subject Subject Range Query Range Percent Splice Strand
CG4641-RA 1..885 17..899 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:31:28 Download gff for BO08256.complete
Subject Subject Range Query Range Percent Splice Strand
CG4641-RA 463..1350 17..906 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:40:44 Download gff for BO08256.complete
Subject Subject Range Query Range Percent Splice Strand
nwk-RF 3173..4054 17..900 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:50 Download gff for BO08256.complete
Subject Subject Range Query Range Percent Splice Strand
CG4641-RA 463..1350 17..906 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:45:49 Download gff for BO08256.complete
Subject Subject Range Query Range Percent Splice Strand
nwk-RF 3173..4054 17..900 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:45:49 Download gff for BO08256.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9143243..9143323 17..97 100 -> Plus
3L 9143527..9144327 98..900 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:40:44 Download gff for BO08256.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9136343..9136423 17..97 100 -> Plus
arm_3L 9136627..9137427 98..900 99   Plus

BO08256.pep Sequence

Translation from 16 to 916

> BO08256.pep
MIDTKPTNLFSFIFNAYSVLIQEPGMEDDLSDDGQPPPSLPPPQLAKAGG
SAPGSGSKVEKGAAAGGANTLNLGMAQIIVTAATPMVEDGADKSFPPVGE
SDAQPVEPVSKEQPAEVAKKPDIAPKPLAKVAPQSAPAKEGNAGVRPVVS
ITLTEYPSCDAEDQQSFSEGTDSASVADVPVLQDAEDPFNEKAKGESGDG
SGFEANFEANFDANFDDAFAGIGGGGGGGGGGGEQSNELDINGEAAGEAI
VSGSAAGDEDIEAPKQVVGGRASIPEELDSNQLARLQNLKESNAASFLDH

BO08256.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:19:59
Subject Length Description Subject Range Query Range Score Percent Strand
nwk-PK 1049 CG43479-PK 773..1049 18..294 1412 99.6 Plus
nwk-PG 1068 CG43479-PG 793..1068 19..294 1411 100 Plus
nwk-PD 1068 CG43479-PD 793..1068 19..294 1411 100 Plus
nwk-PJ 1056 CG43479-PJ 773..1039 18..284 1364 99.6 Plus
nwk-PI 1075 CG43479-PI 793..1058 19..284 1363 100 Plus