Clone Sequence Records
BO08260.3prime Sequence
949 bp (808 high quality bases) assembled on 2006-01-06
> BO08260.3prime
ATGGTCTAGAAAGCTTGCGGTGCGCTTGACGAACTGCACCTTGTATGGTT
TTGGAGTAAGCGTAATCCCAGGCAGAAGCACCATTGATGGAGACTCTCCC
GCCGGCAGGACAACGCTAAAATGCTGCACGATCCGCACTAGAAACGAGAA
GATGCAGGCACGGGCGAGGGCATCGCCCAGACAACGGCGTCTGCCCATGC
CGAAGGGCATGAAGTACTCGTCCTTGAAGCACTTGCCAGCCGAATCGATG
AACCTCTCTGGGCGGAACTCCAGCGGATCCTTCCAGTGCTCCTTATCGAG
ATGCACTGAACGTAGGCTAATCAGAATTGTGGCATTTTTCGGAATGTCGT
AGCCACCCAGCTTGGTTGCCCACAAAGCTCTGCGTGGACCCGTAATGGGA
GTGATGTGGAAGAAGCGCTGCACCTCCATGATGAAGGCATCCATGTAGTC
AAAGGCTTCCCGACGGCTCAAGTGAGGAAACGCATCTGTGCTGGCAGCAG
CCACGCTGGCGGTCACTTGGCTGAACAGCTTCTCCTGCACATCCGGGCGC
ATAGCAAGTACCATTAGGGCCAGGTTGATCGTATTGCTAGTGGTCTGGGA
GCCTGCAATGAAGAAGTCCAGGATGGTCATCACCAGCTGCGTCTCATTGA
ATGTGCTGCTCTCGCCGCCAGCACTGCGGTCCTTCATCTCCTGGAGGTAG
GCATAGATGAGATCGCTTTCCGCCGGCGACGGATCCTTCGCCAGCTGCCG
TCGGTGCTCCTCGATGGTGTCCATAAAGAAACCGTACAGCTCTGTGTTCA
GTTGCTGGATGAGATTGTAGCCAGTGCGATCGGGGGCCACGTGGCGCAGC
CAGGGAAACTGGGCCAGCAGACCACCGCAGATGTCAAAGAGTTTGGAACG
CCGATTCATCANGTCGAGCAGACGCCCGCACGTCCCATCCTCCTGTCTG
BO08260.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8733-PA | 1515 | Cyp305a1-RA | 605..1512 | 926..19 | 4521 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:13:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp305a1-RA | 1801 | CG8733-RA | 719..1649 | 949..19 | 4599 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:13:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19810555..19811485 | 19..949 | 4599 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:13:22 has no hits.
BO08260.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:26 Download gff for
BO08260.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8733-PA | 582..1515 | 15..949 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:34:50 Download gff for
BO08260.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8733-PA | 582..1515 | 15..949 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:48:07 Download gff for
BO08260.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp305a1-RA | 719..1655 | 11..949 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:54:16 Download gff for
BO08260.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp305a1-RA | 719..1655 | 11..949 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:54:16 Download gff for
BO08260.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19810549..19811485 | 11..949 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:48:07 Download gff for
BO08260.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19803649..19804585 | 11..949 | 99 | | Plus |
BO08260.5prime Sequence
905 bp (824 high quality bases) assembled on 2006-01-06
> BO08260.5prime
GAAGTTATCAGTCGACATGAGTGCCCTCATATTTCTGTGCGCGATTCTAA
TTGGTTTCGTGATTTATTCACTCATCAGCTCGGCGCGGCGTCCCAAGAAC
TTTCCACCAGGACCTCGATTTGTGCCATGGTTAGGAAACACATTACAGTT
CCGTAAGGAAGCTAGTGCTGTTGGCGGCCAGCACATCCTGTTCGAGCGCT
GGGCAAAAGACTTCCGGAGCGACCTGGTGGGTCTGAAGCTGGGCCGCGAA
TATGTGGTGGTTGCCCTTGGCCACGAGATGGTGAAGGAAGTGCAGCTGCA
GGAGGTGTTCGAGGGGCGACCAGATAACTTCTTTCTGCGTCTGCGAACCA
TGGGAACCCGCAAGGGCATCACCTGTACGGACGGACAGCTTTGGTACGAG
CACCGACATTTTGCCATGAAGCAGATGCGCAACGTGGGCTACGGACGCAG
CCAGATGGAGCATCACATCGAACTGGAGGCGGAAGAGCTGCTGGGGCAGC
TGGAGCGCACCGAGGAGCAGCCGATCGAGCCGGTCACTTGGCTGGCGCAG
AGTGTACTCAATGTACTGTGGTGTCTGATAGCTGGAAAGAGGATCGCCAG
ACAGGAGGATGGGACGTTGCGGCGTCTGCTCGACCTGATGAATCGGCGTT
CCAAACTCTTTGACATCTGCGGTGGTCTGCTGGCCCAGTTTCCCTGGCTG
CGCCACGTGGCCCCCGATCGCACTGGCTACAATCTCATCCAGCAACTGAA
CACAGAGCTGTACGGTTTCTTTATGGACACCATCGAGGAGCACCGACGGC
AGCTGGCGAAGGATCCGTCGCCGGCGGAAAGCGATCTCATCTATGCCTAC
CTCCAGGAGATGAAGGACCGCAGTGCTGGCGGCGAGAGCAGCACATTCAA
TGAAA
BO08260.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8733-PA | 1515 | Cyp305a1-RA | 1..887 | 17..903 | 4435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:05:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp305a1-RA | 1801 | CG8733-RA | 138..1024 | 17..903 | 4435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:05:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19811180..19811937 | 903..146 | 3790 | 100 | Minus |
| 3L | 28110227 | 3L | 19813108..19813202 | 111..17 | 475 | 100 | Minus |
| 3L | 28110227 | 3L | 19812170..19812210 | 148..108 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:05:26 has no hits.
BO08260.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:27 Download gff for
BO08260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8733-PA | 1..886 | 17..902 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:34:51 Download gff for
BO08260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8733-PA | 1..886 | 17..902 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:13:11 Download gff for
BO08260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp305a1-RA | 127..1023 | 3..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:12:33 Download gff for
BO08260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp305a1-RA | 127..1023 | 3..902 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:12:33 Download gff for
BO08260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19811181..19811934 | 149..902 | 100 | <- | Minus |
| 3L | 19812170..19812207 | 111..148 | 100 | <- | Minus |
| 3L | 19813109..19813213 | 3..110 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:13:11 Download gff for
BO08260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19804281..19805034 | 149..902 | 100 | <- | Minus |
| arm_3L | 19805270..19805307 | 111..148 | 100 | <- | Minus |
| arm_3L | 19806209..19806313 | 3..110 | 95 | | Minus |
BO08260.complete Sequence
1546 bp (1546 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631127
> BO08260.complete
GAAGTTATCAGTCGACATGAGTGCCCTCATATTTCTGTGCGCGATTCTAA
TTGGTTTCGTGATTTATTCACTCATCAGCTCGGCGCGGCGTCCCAAGAAC
TTTCCACCAGGACCTCGATTTGTGCCATGGTTAGGAAACACATTACAGTT
CCGTAAGGAAGCTAGTGCTGTTGGCGGCCAGCACATCCTGTTCGAGCGCT
GGGCAAAAGACTTCCGGAGCGACCTGGTGGGTCTGAAGCTGGGCCGCGAA
TATGTGGTGGTTGCCCTTGGCCACGAGATGGTGAAGGAAGTGCAGCTGCA
GGAGGTGTTCGAGGGGCGACCAGATAACTTCTTTCTGCGTCTGCGAACCA
TGGGAACCCGCAAGGGCATCACCTGTACGGACGGACAGCTTTGGTACGAG
CACCGACATTTTGCCATGAAGCAGATGCGCAACGTGGGCTACGGACGCAG
CCAGATGGAGCATCACATCGAACTGGAGGCGGAAGAGCTGCTGGGGCAGC
TGGAGCGCACCGAGGAGCAGCCGATCGAGCCGGTCACTTGGCTGGCGCAG
AGTGTACTCAATGTACTGTGGTGTCTGATAGCTGGAAAGAGGATCGCCAG
ACAGGAGGATGGGACGTTGCGGCGTCTGCTCGACCTGATGAATCGGCGTT
CCAAACTCTTTGACATCTGCGGTGGTCTGCTGGCCCAGTTTCCCTGGCTG
CGCCACGTGGCCCCCGATCGCACTGGCTACAATCTCATCCAGCAACTGAA
CACAGAGCTGTACGGTTTCTTTATGGACACCATCGAGGAGCACCGACGGC
AGCTGGCGAAGGATCCGTCGCCGGCGGAAAGCGATCTCATCTATGCCTAC
CTCCAGGAGATGAAGGACCGCAGTGCTGGCGGCGAGAGCAGCACATTCAA
TGAGACGCAGCTGGTGATGACCATCCTGGACTTCTTCATTGCAGGCTCCC
AGACCACTAGCAATACGATCAACCTGGCCCTAATGGTACTTGCTATGCGC
CCGGATGTGCAGGAGAAGCTGTTCAGCCAAGTGACCGCCAGCGTGGCTGC
TGCCAGCACAGATGCGTTTCCTCACTTGAGCCGTCGGGAAGCCTTTGACT
ACATGGATGCCTTCATCATGGAGGTGCAGCGCTTCTTCCACATCACTCCC
ATTACGGGTCCACGCAGAGCTTTGTGGGCAACCAAGCTGGGTGGCTACGA
CATTCCGAAAAATGCCACAATTCTGATTAGCCTACGTTCAGTGCATCTCG
ATAAGGAGCACTGGAAGGATCCGCTGGAGTTCCGCCCAGAGAGGTTCATC
GATTCGGCTGGCAAGTGCTTCAAGGACGAGTACTTCATGCCCTTCGGCAT
GGGCAGACGCCGTTGTCTGGGCGATGCCCTCGCCCGTGCCTGCATCTTCT
CGTTTCTAGTGCGGATCGTGCAGCATTTTAGCGTTGTCCTGCCGGCGGGA
GAGTCTCCATCAATGGTGCTTCTGCCTGGGATTACGCTTACTCCAAAACC
ATACAAGGTGCAGTTCGTCAAGCGCACCGCAAGCTTTCTAGACCAT
BO08260.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:22:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp305a1-RA | 1515 | CG8733-PA | 1..1512 | 17..1528 | 7560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:22:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp305a1-RA | 1801 | CG8733-RA | 138..1649 | 17..1528 | 7560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:22:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19810555..19811937 | 1528..146 | 6915 | 100 | Minus |
| 3L | 28110227 | 3L | 19813108..19813202 | 111..17 | 475 | 100 | Minus |
| 3L | 28110227 | 3L | 19812170..19812210 | 148..108 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:22:28 has no hits.
BO08260.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:51 Download gff for
BO08260.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp305a1-RA | 1..1515 | 17..1532 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:31:30 Download gff for
BO08260.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp305a1-RA | 111..1639 | 3..1536 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:40:13 Download gff for
BO08260.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp305a1-RA | 138..1649 | 17..1530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:51 Download gff for
BO08260.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp305a1-RA | 111..1639 | 3..1536 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:11 Download gff for
BO08260.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp305a1-RA | 138..1649 | 17..1530 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:11 Download gff for
BO08260.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19810553..19811934 | 149..1530 | 99 | <- | Minus |
| 3L | 19812170..19812207 | 111..148 | 100 | <- | Minus |
| 3L | 19813109..19813202 | 17..110 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:40:13 Download gff for
BO08260.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19803653..19805034 | 149..1530 | 99 | <- | Minus |
| arm_3L | 19805270..19805307 | 111..148 | 100 | <- | Minus |
| arm_3L | 19806209..19806302 | 17..110 | 100 | | Minus |
BO08260.pep Sequence
Translation from 16 to 1546
> BO08260.pep
MSALIFLCAILIGFVIYSLISSARRPKNFPPGPRFVPWLGNTLQFRKEAS
AVGGQHILFERWAKDFRSDLVGLKLGREYVVVALGHEMVKEVQLQEVFEG
RPDNFFLRLRTMGTRKGITCTDGQLWYEHRHFAMKQMRNVGYGRSQMEHH
IELEAEELLGQLERTEEQPIEPVTWLAQSVLNVLWCLIAGKRIARQEDGT
LRRLLDLMNRRSKLFDICGGLLAQFPWLRHVAPDRTGYNLIQQLNTELYG
FFMDTIEEHRRQLAKDPSPAESDLIYAYLQEMKDRSAGGESSTFNETQLV
MTILDFFIAGSQTTSNTINLALMVLAMRPDVQEKLFSQVTASVAAASTDA
FPHLSRREAFDYMDAFIMEVQRFFHITPITGPRRALWATKLGGYDIPKNA
TILISLRSVHLDKEHWKDPLEFRPERFIDSAGKCFKDEYFMPFGMGRRRC
LGDALARACIFSFLVRIVQHFSVVLPAGESPSMVLLPGITLTPKPYKVQF
VKRTASFLDH
BO08260.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:19:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp305a1-PA | 504 | CG8733-PA | 1..504 | 1..504 | 2633 | 100 | Plus |
| Cyp303a1-PB | 503 | CG4163-PB | 10..501 | 8..503 | 703 | 32.9 | Plus |
| Cyp303a1-PA | 503 | CG4163-PA | 10..501 | 8..503 | 703 | 32.9 | Plus |
| Cyp18a1-PB | 538 | CG6816-PB | 28..520 | 4..503 | 549 | 29.9 | Plus |
| Cyp18a1-PA | 538 | CG6816-PA | 28..520 | 4..503 | 549 | 29.9 | Plus |
