Clone Sequence Records
BO08261.3prime Sequence
936 bp (784 high quality bases) assembled on 2006-01-06
> BO08261.3prime
ATGGTCTAGAAAGCTTGCCAGTTCGGTGTGCTTGGGCTTGTTGAACAATC
TCTCGCACAGTTTGGCCAAAATCTGGGACACCTCCAGTCGGTACTCGTCC
GTGCTGTTGGCATACCGATTGCGAACGGTTAATAGTGCATGCCTGAGACC
GGAACTTTGCGACCACGTGCTGGTGCACATATCTTCGGTGGTCTCCAATG
CGGTGGCAAACTGTTCCACCACCTCCGGTTGCTCTAGGAGGAGCAGGAAC
TCCTTGGTTAGCACAGTGTCCACCGCCGCGCAGTAGCCCGGCGTTTTCAG
CCACGACTCGAAGTCCAAGAGCACATATTGCGCCATTGTGGATGAGGCTT
CGGGATCATCTTTGCTGACATCCAGCACTGACCGCTTCTCCAGCACTAGG
TCGCTTATGAGAGTCACTACCTTCGCCTTGCTCCGCAGCTCCACATCCGG
ACTCTGGAGCACCTTGATCAGAGCCTGTGTACCCGAGGTGGAAAGCACTC
GCTGCTGGGCTAGCGGAAATTTCCGCAACAAGGCTCCAAAGGCGTGCAAT
GCAGCGGAGATCTCACCGACATTTCCGGAACTGGTCAGAATCTGAGCCAG
ATGAGACCCGAAATTCTTTTCGAACACCTTGATCTGGGCCTTGGGATTGT
TGCTCGCCAGCGAGCCCAACACACGCATGGCCGACACTCTCAGGGATGTA
CTGGTATCGTTCACAACAATGGGCAGTAGTACATCATCCAATCCCCCATT
ATCAATGAACATCAAGGCATTGTCTATCTGATGGAGCAAATACTCCAGAT
TTTCCAGGCAGTCCAGCTTGGAGCGCATCTCTGACTCTAGCGGCGTTCTG
CTGAAGTTCCGAAACTGATCGATTAACTGGACGATCAGTTCTCCGTCGGT
GCGAAAGTTCTTCTGGAACTCTTTGTACGCTTTGCG
BO08261.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10420-PA | 1290 | CG10420-RA | 370..1287 | 936..19 | 4590 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:06:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10420-RA | 1831 | CG10420-RA | 502..1419 | 936..19 | 4590 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:06:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25234048..25234965 | 19..936 | 4590 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:06:06 has no hits.
BO08261.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:28 Download gff for
BO08261.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10420-PA | 370..1290 | 15..936 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:34:52 Download gff for
BO08261.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10420-PA | 370..1290 | 15..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:13:16 Download gff for
BO08261.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10420-RA | 502..1422 | 15..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:12:40 Download gff for
BO08261.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10420-RA | 502..1422 | 15..936 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:12:40 Download gff for
BO08261.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25234045..25234965 | 15..936 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:13:16 Download gff for
BO08261.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21059767..21060687 | 15..936 | 99 | | Plus |
BO08261.5prime Sequence
879 bp (796 high quality bases) assembled on 2006-01-06
> BO08261.5prime
GAAGTTATCAGTCGACATGAGTGGCAAGCAGGTAGTCATCCTTCTGGGCA
GTGTCCTGATCCTGGGATGCTTACAAGTGGCAGCGGCAACGGAAACGGAT
AACAAAACCAACGATTTCGTGGCCACCGACGAATGGCAGACGATTGCGGA
AGGTCAAGCTATTCCAAGGGGCCTGCACGTGCGCATCAACCTACAAACGG
GGCTCAAGGAAGCCAAACTCTTAGACGAAAGCGAACGTGGCACGTCGCTG
CAGAGTCAACCGGATGATCAGAATGCTCGGGAATCTCACGATGACAACGA
ACCCCTGGCTCTGGACTATAAACCGGACATAATCGAGGAGTCTATACGGC
GGGTCAAGGAGCAGAAGAAGAGCTATGCCGAGCTACGCAAAGCGTACAAA
GAGTTCCAGAAGAACTTTCGCACCGACGGAGAACTGATCGTCCAGTTAAT
CGATCAGTTTCGGAACTTCAGCAGAACGCCGCTAGAGTCAGAGATGCGCT
CCAAGCTGGACTGCCTGGAAAATCTGGAGTATTTGCTCCATCAGATAGAC
AATGCCTTGATGTTCATTGATAATGGGGGATTGGATGATGTACTACTGCC
CATTGTTGTGAACGATACCAGTACATCCCTGAGAGTGTCGGCCATGCGTG
TGTTGGGCTCGCTGGCGAGCAACAATCCCAAGGCCCAGATCAAGGTGTTC
GAAAAGAATTTCGGGTCTCATCTGGCTCAGATTCTGACCAGTTCCGGAAA
TGTCGGTGAGATCTCCGCTGCATTGCACGCCTTTGGAGCCTTGTTGCGGA
AATTTCCGCTAGCCCAGCAGCGAGTGCTTTCCACCTCGGGTACACAGGCT
CTGATCAAAGTGCTCCAGAGTCCGGATGT
BO08261.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10420-PA | 1290 | CG10420-RA | 1..863 | 17..879 | 4290 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:05:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10420-RA | 1831 | CG10420-RA | 133..995 | 17..879 | 4300 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:05:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25234472..25235200 | 879..151 | 3630 | 99.9 | Minus |
| 3R | 32079331 | 3R | 25235260..25235397 | 154..17 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:05:45 has no hits.
BO08261.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:29 Download gff for
BO08261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10420-PA | 1..863 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:34:53 Download gff for
BO08261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10420-PA | 1..863 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:46:27 Download gff for
BO08261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10420-RA | 129..995 | 9..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:31:16 Download gff for
BO08261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10420-RA | 129..995 | 9..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:31:16 Download gff for
BO08261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25234472..25235198 | 153..879 | 99 | <- | Minus |
| 3R | 25235262..25235401 | 9..152 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:46:27 Download gff for
BO08261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21060194..21060920 | 153..879 | 99 | <- | Minus |
| arm_3R | 21060984..21061123 | 9..152 | 97 | | Minus |
BO08261.complete Sequence
1321 bp (1321 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631128
> BO08261.complete
GAAGTTATCAGTCGACATGAGTGGCAAGCAGGTAGTCATCCTTCTGGGCA
GTGTCCTGATCCTGGGATGCTTACAAGTGGCAGCGGCAACGGAAACGGAT
AACAAAACCAACGATTTCGTGGCCACCGACGAATGGCAGACGATTGCGGA
AGGTCAAGCTATTCCAAGGGGCCTGCACGTGCGCATCAACCTACAAACGG
GGCTCAAGGAAGCCAAACTCTTAGACGAAAGCGAACGTGGCACGTCGCTG
CAGAGTCAACCGGATGATCAGAATGCTCGGGAATCTCACGATGACAACGA
ACCCCTGGCTCTGGACTATAAACCGGACATAATCGAGGAGTCTATACGGC
GGGTCAAGGAGCAGAAGAAGAGCTATGCCGAGCTACGCAAAGCGTACAAA
GAGTTCCAGAAGAACTTTCGCACCGACGGAGAACTGATCGTCCAGTTAAT
CGATCAGTTTCGGAACTTCAGCAGAACGCCGCTAGAGTCAGAGATGCGCT
CCAAGCTGGACTGCCTGGAAAATCTGGAGTATTTGCTCCATCAGATAGAC
AATGCCTTGATGTTCATTGATAATGGGGGATTGGATGATGTACTACTGCC
CATTGTTGTGAACGATACCAGTACATCCCTGAGAGTGTCGGCCATGCGTG
TGTTGGGCTCGCTGGCGAGCAACAATCCCAAGGCCCAGATCAAGGTGTTC
GAAAAGAATTTCGGGTCTCATCTGGCTCAGATTCTGACCAGTTCCGGAAA
TGTCGGTGAGATCTCCGCTGCATTGCACGCCTTTGGAGCCTTGTTGCGGA
AATTTCCGCTAGCCCAGCAGCGAGTGCTTTCCACCTCGGGTACACAGGCT
CTGATCAAGGTGCTCCAGAGTCCGGATGTGGAGCTGCGGAGCAAGGCGAA
GGTAGTGACTCTCATAAGCGACCTAGTGCTGGAGAAGCGGTCAGTGCTGG
ATGTCAGCAAAGATGATCCCGAAGCCTCATCCACAATGGCGCAATATGTG
CTCTTGGACTTCGAGTCGTGGCTGAAAACGCCGGGCTACTGCGCGGCGGT
GGACACTGTGCTAACCAAGGAGTTCCTGCTCCTCCTAGAGCAACCGGAGG
TGGTGGAACAGTTTGCCACCGCATTGGAGACCACCGAAGATATGTGCACC
AGCACGTGGTCGCAAAGTTCCGGTCTCAGGCATGCACTATTAACCGTTCG
CAATCGGTATGCCAACAGCACGGACGAGTACCGACTGGAGGTGTCCCAGA
TTTTGGCCAAACTGTGCGAGAGATTGTTCAACAAGCCCAAGCACACCGAA
CTGGCAAGCTTTCTAGACCAT
BO08261.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:21:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10420-RA | 1290 | CG10420-PA | 1..1287 | 17..1303 | 6435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10420-RA | 1831 | CG10420-RA | 133..1419 | 17..1303 | 6435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25234048..25235200 | 1303..151 | 5765 | 100 | Minus |
| 3R | 32079331 | 3R | 25235260..25235397 | 154..17 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:21:28 has no hits.
BO08261.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:52 Download gff for
BO08261.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10420-RA | 1..1290 | 17..1307 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:31:32 Download gff for
BO08261.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10420-RA | 118..1411 | 9..1307 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:24 Download gff for
BO08261.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10420-RA | 133..1419 | 17..1305 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:52 Download gff for
BO08261.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10420-RA | 118..1411 | 9..1307 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:53 Download gff for
BO08261.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10420-RA | 133..1419 | 17..1305 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:53 Download gff for
BO08261.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25235262..25235397 | 17..152 | 100 | | Minus |
| 3R | 25234046..25235198 | 153..1305 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:24 Download gff for
BO08261.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21059768..21060920 | 153..1305 | 99 | <- | Minus |
| arm_3R | 21060984..21061119 | 17..152 | 100 | | Minus |
BO08261.pep Sequence
Translation from 16 to 1321
> BO08261.pep
MSGKQVVILLGSVLILGCLQVAAATETDNKTNDFVATDEWQTIAEGQAIP
RGLHVRINLQTGLKEAKLLDESERGTSLQSQPDDQNARESHDDNEPLALD
YKPDIIEESIRRVKEQKKSYAELRKAYKEFQKNFRTDGELIVQLIDQFRN
FSRTPLESEMRSKLDCLENLEYLLHQIDNALMFIDNGGLDDVLLPIVVND
TSTSLRVSAMRVLGSLASNNPKAQIKVFEKNFGSHLAQILTSSGNVGEIS
AALHAFGALLRKFPLAQQRVLSTSGTQALIKVLQSPDVELRSKAKVVTLI
SDLVLEKRSVLDVSKDDPEASSTMAQYVLLDFESWLKTPGYCAAVDTVLT
KEFLLLLEQPEVVEQFATALETTEDMCTSTWSQSSGLRHALLTVRNRYAN
STDEYRLEVSQILAKLCERLFNKPKHTELASFLDH
BO08261.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:19:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10420-PA | 429 | CG10420-PA | 1..429 | 1..429 | 2146 | 100 | Plus |
