Clone Sequence Records
BO08265.3prime Sequence
918 bp (851 high quality bases) assembled on 2006-01-06
> BO08265.3prime
ATGGTCTAGAAAGCTTGCTTTCAGCATGTCTGCGTATCGAACTGGCAGAT
AGGCGAAGAAGGTTTTGAGCATGGATGAGCTTCTGGCCAAGTGGGGACTC
AGGGCACTCCAGCAGATTCTTGTCAGGGTCAGGATCTTGTCGTTGAGCGG
CATTCGGTATTCGGTTTTTAATTTCTTGCACAACGCCTCCAGACGTTTAA
AGTCGTCAAAAGTGTCCTTTGCCGAGAATCCTTCGCGCTTGGCGCTGGGT
GCTTCGTTTAGTTGGTTCTCAACATGCACAAATGTGGCCAGTCCCTTTTC
AATCGTATCAACAATCTCTTCGTGGCAGTAGGTCTTCCCATATCGACGCT
TAATCCACTCGACCATCACAAAGGATTTGTGCGAGTCGGGAAAAGCGGCG
AAGACGCAGCGTGGATCCTGCCTCAGTACGGAAAATCCATCCCGCAGCAG
GCGCTCCATTAAATGTTGGTTGTTGGGGTCGAACTTCTTGATTGTCTTTG
TCCAATCTAGGGCATCATTTGTTTTGCAGATTTCTTCCGGCTCATTTTTG
GCTGGCACTTCAATAGTCGTTGGTCTTTCGGATTGGCCAGATGACAGGCG
CCGTTGATGAGCCTCCAGGGAGCCAAACCACATGTTTTGGGCGCACTCAA
CGATGGCCGCCACCACCTGGTCTCGGGGATTGATCCGTCCGTTGTAGTTA
TCCTCGCTTGAGGGGCAACTTTGCTCCTTTAAGGTGCGAATGGCCTGNGC
ACGAATCACATCCTTGGTATCTGGATTTTGATCCTGCGGTGCAACCGCAT
GGTATTTGAACACAAAGGGACTGTGCTGGTGAGGAGCTTCAAAAAAGCGT
CCTGGCTTCGATGTTTTCTTGCAGGAAGACTGCTTATCGTCGCCGAATTT
GGATTTTGTGATGGACAC
BO08265.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14735-PA | 2136 | CG14735-RA | 1234..2133 | 918..19 | 4456 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:07:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ssp5-RA | 2384 | CG14735-RA | 1357..2256 | 918..19 | 4474 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:07:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12034498..12035397 | 918..19 | 4474 | 99.8 | Minus |
Blast to na_te.dros performed 2015-02-13 16:07:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\worf | 4174 | Dmir\worf WORF 4174bp Derived from AY144572. | 2632..2688 | 260..321 | 109 | 69.4 | Plus |
BO08265.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:35 Download gff for
BO08265.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14735-PA | 1234..2136 | 18..918 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:35:04 Download gff for
BO08265.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14735-PA | 1234..2136 | 18..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 16:00:10 Download gff for
BO08265.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssp5-RA | 1357..2256 | 19..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:27:45 Download gff for
BO08265.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssp5-RA | 1357..2256 | 19..918 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:27:45 Download gff for
BO08265.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12034498..12035397 | 19..918 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 16:00:10 Download gff for
BO08265.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7860220..7861119 | 19..918 | 99 | | Minus |
BO08265.5prime Sequence
901 bp (842 high quality bases) assembled on 2006-01-06
> BO08265.5prime
GAAGTTATCAGTCGACATGCTGGATAAGCCAGCCCCAGTGGGGGCCTCAT
GGTACACCAATCTGTCCGACTTCCAGGTGCAGGCCGTCGAGGCACTGGCC
TTCTCGATTCGGGATGACAATGCGGAGGGTACTGTGTACCGCACCCAGTT
CTGTCTCAGTCGCTTGGGAGTCACGCCCATGGTAAAGACCCGGATGTTGC
GGAAGCTAATTGGGATTTGTCGCGGCAGCGACTTGGCATTCCTTTACTTT
CTGATGGAGGCCTGCTATAAGGGCACAGGATCTGCGTACAGTGAACGGAT
CCTGATGTCCGCCATCACCTTTTTGGATCTGGAGATGACCATGAGGGAAC
TGGACAAAATACTGCCGCCGGGAGTGGAACGGCTGAATAAGAAAGAGTCG
ATAGCTCCGCCAGTGGATTATCGCTCCATGTCGTTGCCAACACCTTTACC
GACCAAACGGGAATCGGATCTCCGAAAGGTCCGCTCGCCCTACTTTACCC
CGTTGCCCAAACCAAAGCTACCCAAGGGTGGCGAGAAGTTCACTGCCAAG
AGACCCTGCCTCGTGGTCTCCTTTCCATTCTGGCCCGCTGGCGAGAGGCC
CAACTACAAGGTGAACGAGGAGAACCGCTGGTTCGCCGCTTACAGGTTCC
AGCCGGTGAAGCGGATGCTCTTCAAGATGGTCGGCGACATCATGACCGAC
TACTGGACAAAGATAGATGGTACTCAACCGGCGGAGAACGAAGCGATGCC
CATGTGCGAGTTCCACAAGGAGGCACTGCGGCAGGAGCAGCTGGTGAAGG
ATGCAGCTGTGGTCAAGGCCCACAAACAGTGCTTGGCTCTCGTGGATATC
ACTTCACGGCANGATGTCCTCCTTAAGAAACGTATCGTGGCCCCAGTGGA
A
BO08265.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14735-PA | 2136 | CG14735-RA | 1..877 | 17..893 | 4341 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:41:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ssp5-RA | 2384 | CG14735-RA | 123..1000 | 16..893 | 4364 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:41:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12033264..12034141 | 16..893 | 4364 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:41:55 has no hits.
BO08265.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:36 Download gff for
BO08265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14735-PA | 1..882 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:35:05 Download gff for
BO08265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14735-PA | 1..882 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:06:43 Download gff for
BO08265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssp5-RA | 116..1008 | 10..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:58:47 Download gff for
BO08265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssp5-RA | 116..1008 | 10..901 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:58:47 Download gff for
BO08265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12033257..12034149 | 10..901 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:06:43 Download gff for
BO08265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7858979..7859871 | 10..901 | 99 | | Plus |
BO08265.complete Sequence
2167 bp (2167 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631129
> BO08265.complete
GAAGTTATCAGTCGACATGCTGGATAAGCCAGCCCCAGTGGGGGCCTCAT
GGTACACCAATCTGTCCGACTTCCAGGTGCAGGCCGTCGAGGCACTGGCC
TTCTCGATTCGGGATGACAATGCGGAGGGTACTGTGTACCGCACCCAGTT
CTGTCTCAGTCGCTTGGGAGTCACGCCCATGGTAAAGACCCGGATGTTGC
GGAAGCTAATTGGGATTTGTCGCGGCAGCGACTTGGCATTCCTTTACTTT
CTGATGGAGGCCTGCTATAAGGGCACAGGATCTGCGTACAGTGAACGGAT
CCTGATGTCCGCCATCACCTTTTTGGATCTGGAGATGACCATGAGGGAAC
TGGACAAAATACTGCCGCCGGGAGTGGAACGGCTGAATAAGAAAGAGTCG
ATAGCTCCGCCAGTGGATTATCGCTCCATGTCGTTGCCAACACCTTTACC
GACCAAACGGGAATCGGATCTCCGAAAGGTCCGCTCGCCCTACTTTACCC
CGTTGCCCAAACCAAAGCTACCCAAGGGTGGCGAGAAGTTCACTGCCAAG
AGACCCTGCCTCGTGGTCTCCTTTCCATTCTGGCCCGCTGGCGAGAGGCC
CAACTACAAGGTGAACGAGGAGAACCGCTGGTTCGCCGCTTACAGGTTCC
AGCCGGTGAAGCGGATGCTCTTCAAGATGGTCGGCGACATCATGACCGAC
TACTGGACAAAGATAGATGGTACTCAACCGGCGGAGAACGAAGCGATGCC
CATGTGCGAGTTCCACAAGGAGGCACTGCGGCAGGAGCAGCTGGTGAAGG
ATGCAGCTGTGGTCAAGGCCCACAAACAGTGCTTGGCTCTCGTGGATATC
ACTTCACGGCAGGATGCCCTCCTTAAGAAACGTATCGTGGCCCAGTTGGA
AAGGGACATTGAGGAGGTCACGCTGCGTTGGAAACGACTTCGTGAGCGCC
ACCATACGGATGTCATGTTGTTGGAGGATCACGATCAGATGTGTTCGGTG
GGCAAAGTGCCTACGGCTGTGCAGGATATCAGGATAAAGTACCTATCCCA
GGAAGCGGACATCGGGCGTCTGAGTGCCAAACCCACCTTGGGTATCCATG
TGATCACCGGCAGGGGTAACGTGAGTCGGTTAAGTAAAGTGCGGGTCTCG
GATCCCGATGATGACATCCCATGCCCCACGGTACCCGTGGAGCAAAAGCT
GGCCAAATGTCCACCCCCTATACTGGGACACATCAAACGTCCGCGGAAGG
TGTCCATCACAAAATCCAAATTCGGCGACGATAAGCAGTCTTCCTGCAAG
AAACCATCGAAGCCAGGACGCTTTTTTGAAGCTCCTCACCAGCACAGTCC
CTTTGTGTTCAAATACCATGCGGTTGCACCGCAGGATCAAAATCCAGATA
CCAAGGATGTGATTCGTGCCCAGGCCATTCGCACCTTAAAGGAGCAAAGT
TGCCCCTCAAGCGAGGATAACTACAACGGACGGATCAATCCCCGAGACCA
GGTGGTGGCGGCCATCGTTGAGTGCGCCCAAAACATGTGGTTTGGCTCCC
TGGAGGCTCATCAACGGCGCCTGTCATCTGGCCAATCCGAAAGACCAACG
ACTATTGAAGTGCCAGCCAAAAATGAGCCGGAAGAAATCTGCAAAACAAA
TGATGCCCTAGATTGGACAAAGACAATCAAGAAGTTCGACCCCAACAACC
AACATTTAATGGAGCGCCTGCTGCGGGATGGATTTTCCGTACTGAGGCAG
GATCCACGCTGCGTCTTCGCCGCTTTTCCCGACTCGCACAAATCCTTTGT
GATGGTCGAGTGGATTAAGCGTCGATATGGGAAGACCTACTGCCACGAAG
AGATTGTTGATACGATTGAAAAGGGACTGGCCACATTTGTGCATGTTGAG
AACCAACTAAACGAAGCACCCAGCGCCAAGCGCGAAGGATTCTCGGCAAA
GGACACTTTTGACGACTTTAAACGTCTGGAGGCGTTGTGCAAGAAATTAA
AAACCGAATACCGAATGCCGCTCAACGACAAGATCCTGACCCTGACAAGA
ATCTGCTGGAGTGCCCTGAGTCCCCACTTGGCCAGAAGCTCATCCATGCT
CAAAACCTTCTTCGCCTATCTGCCAGTTCGATACGCAGACATGCTGAAAG
CAAGCTTTCTAGACCAT
BO08265.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:29:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ssp5-RA | 2136 | CG14735-PA | 1..2133 | 17..2149 | 10665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ssp5-RA | 2384 | CG14735-RA | 123..2256 | 16..2149 | 10670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12033264..12035397 | 16..2149 | 10670 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:29:31 has no hits.
BO08265.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:10 Download gff for
BO08265.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssp5-RA | 1..2136 | 17..2150 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:19:38 Download gff for
BO08265.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssp5-RA | 116..2256 | 10..2149 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:34 Download gff for
BO08265.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssp5-RA | 124..2256 | 17..2151 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:10 Download gff for
BO08265.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssp5-RA | 116..2256 | 10..2149 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:50 Download gff for
BO08265.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssp5-RA | 124..2256 | 17..2151 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:50 Download gff for
BO08265.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12033265..12035397 | 17..2151 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:34 Download gff for
BO08265.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7858987..7861119 | 17..2151 | 99 | | Plus |
BO08265.pep Sequence
Translation from 16 to 2167
> BO08265.pep
MLDKPAPVGASWYTNLSDFQVQAVEALAFSIRDDNAEGTVYRTQFCLSRL
GVTPMVKTRMLRKLIGICRGSDLAFLYFLMEACYKGTGSAYSERILMSAI
TFLDLEMTMRELDKILPPGVERLNKKESIAPPVDYRSMSLPTPLPTKRES
DLRKVRSPYFTPLPKPKLPKGGEKFTAKRPCLVVSFPFWPAGERPNYKVN
EENRWFAAYRFQPVKRMLFKMVGDIMTDYWTKIDGTQPAENEAMPMCEFH
KEALRQEQLVKDAAVVKAHKQCLALVDITSRQDALLKKRIVAQLERDIEE
VTLRWKRLRERHHTDVMLLEDHDQMCSVGKVPTAVQDIRIKYLSQEADIG
RLSAKPTLGIHVITGRGNVSRLSKVRVSDPDDDIPCPTVPVEQKLAKCPP
PILGHIKRPRKVSITKSKFGDDKQSSCKKPSKPGRFFEAPHQHSPFVFKY
HAVAPQDQNPDTKDVIRAQAIRTLKEQSCPSSEDNYNGRINPRDQVVAAI
VECAQNMWFGSLEAHQRRLSSGQSERPTTIEVPAKNEPEEICKTNDALDW
TKTIKKFDPNNQHLMERLLRDGFSVLRQDPRCVFAAFPDSHKSFVMVEWI
KRRYGKTYCHEEIVDTIEKGLATFVHVENQLNEAPSAKREGFSAKDTFDD
FKRLEALCKKLKTEYRMPLNDKILTLTRICWSALSPHLARSSSMLKTFFA
YLPVRYADMLKASFLDH
BO08265.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:45:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ssp5-PA | 711 | CG14735-PA | 1..711 | 1..711 | 3750 | 100 | Plus |
| CG13127-PA | 734 | CG13127-PA | 17..708 | 12..709 | 467 | 24.2 | Plus |
| CG9861-PA | 898 | CG9861-PA | 17..330 | 10..323 | 438 | 35.1 | Plus |
| CG42820-PA | 689 | CG13394-PB | 7..670 | 2..703 | 427 | 24.2 | Plus |
| CG9861-PA | 898 | CG9861-PA | 626..860 | 456..702 | 278 | 29.2 | Plus |
| CG15548-PA | 814 | CG15548-PA | 27..324 | 4..295 | 266 | 28.1 | Plus |
