Clone BO08272 Report

Search the DGRC for BO08272

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:82
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptCG17838-RC
Protein status:BO08272.pep: validated full length
Sequenced Size:1621

Clone Sequence Records

BO08272.3prime Sequence

913 bp (863 high quality bases) assembled on 2006-01-06

> BO08272.3prime
ATGGTCTAGAAAGCTTGCACTCCATGCCGAAAACGTATCCATGTACCACT
GTTCACCATTGGTGCCTAAAGGTTGCTGTGGTAGCGGTAAACTGCCCCAA
CTGCCGCCATTTCCTATTAAACCGCTCGGGTAACGTCGCTTAACATCTGC
CGGATTTTGGTGACCTCCATCGAACTTACGTTTACCGACTACGTATTCAC
GGGGTATCGGCGTACGCAGCGGCATGCGCGCCCCTGGGCGCATGGGCGTC
AAGGACATTATGCTAGGATGTGTCGGCGACAGGTTTCCCACGATCCCGGG
ACGCGCTTGCATCATTTGCATCATGCGGCGCTCACGAGCACGCAGAATCT
CCTCCTTTTTCTTTTTGTCCGAGGGGGGTTTGGCTAGAGAGACCTCAATA
TTCGAGGCGCCGATCTCCTTGCCATTAAGGCCACGCATAGCTTCGACGGC
GCTATCACGATCCTCAAAGTGTATAAAGGCATAGTCTTTAATTTTCTTAA
CGCGTTCCACTTTTCCGTATTGCTCAAATTGTTCCTTCAGTTTATCCTCT
GAGACGTCCTGGGTAAGATTTCGCACATAAAGAACTTTAACCTTGGACAT
TGTTTGCTCATCCGGCTCCTCCTGTGGATCGGCCCAGTCGACTATTATAT
CACATCCCCAAACCTTAATTCTTCCTGTGCCAAGTCTTCGTTTGGCCAAA
GACGCCGCCTTGTGTGACTCGTACTCAAGAAAGCAAAAGCCGCGATTCTT
TTTCTTATCATCTGGCGAACTGTATATGATTACCTCGTATAGGCCAGGTG
CATGTTTTGAAAATTCCTCAATTAATTCGTCGCGATCTCTATTCTTAGGT
ATATTGCCGACAAAATACCGGTGATTTGTTAATGATATCGTAACACCCAT
CTTTTTGCCTGTC

BO08272.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG17838-PB 1590 CG17838-RB 742..1587 864..19 4230 100 Minus
CG17838-PA 1692 CG17838-RA 911..1689 797..19 3895 100 Minus
CG17838-PC 1590 CG17838-RC 809..1587 797..19 3895 100 Minus
CG17838-PF 1590 CG17838-RF 809..1587 797..19 3895 100 Minus
CG17838-PE 1716 CG17838-RE 935..1713 797..19 3895 100 Minus
CG17838-PD 2124 CG17838-RD 935..1540 797..192 3030 100 Minus
CG17838-PB 1590 CG17838-RB 693..725 913..881 140 96.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:06:30
Subject Length Description Subject Range Query Range Score Percent Strand
Syp-RC 2740 CG17838-RC 1742..2636 913..19 4370 99.4 Minus
Syp-RH 2214 CG17838-RH 1310..2110 819..19 3915 99.3 Minus
Syp-RE 6543 CG17838-RE 1136..1936 819..19 3915 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:06:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20805946..20806119 192..19 870 100 Minus
3R 32079331 3R 20797534..20797678 536..392 725 100 Minus
3R 32079331 3R 20797144..20797279 797..662 680 100 Minus
3R 32079331 3R 20797343..20797474 665..534 660 100 Minus
3R 32079331 3R 20797745..20797853 395..287 545 100 Minus
3R 32079331 3R 20798314..20798409 287..192 480 100 Minus
3R 32079331 3R 20795159..20795274 913..798 475 94 Minus
Blast to na_te.dros performed on 2015-02-11 18:06:26 has no hits.

BO08272.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:44 Download gff for BO08272.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17838-PB 693..1590 15..913 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:35:18 Download gff for BO08272.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17838-PB 693..1590 15..913 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:46:29 Download gff for BO08272.3prime
Subject Subject Range Query Range Percent Splice Strand
Syp-RC 1742..2639 15..913 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:34:03 Download gff for BO08272.3prime
Subject Subject Range Query Range Percent Splice Strand
Syp-RC 1742..2639 15..913 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:34:03 Download gff for BO08272.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20805947..20806122 15..191 98   Minus
3R 20797747..20797853 287..393 100 -> Minus
3R 20798315..20798409 192..286 100 -> Minus
3R 20795159..20795274 798..913 95 -> Minus
3R 20797144..20797277 664..797 100 -> Minus
3R 20797345..20797473 535..663 100 -> Minus
3R 20797536..20797676 394..534 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:46:29 Download gff for BO08272.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16620881..16620996 798..913 95 -> Minus
arm_3R 16622866..16622999 664..797 100 -> Minus
arm_3R 16623067..16623195 535..663 100 -> Minus
arm_3R 16623258..16623398 394..534 100 -> Minus
arm_3R 16623469..16623575 287..393 100 -> Minus
arm_3R 16624037..16624131 192..286 100 -> Minus
arm_3R 16631669..16631844 15..191 98   Minus

BO08272.5prime Sequence

907 bp (811 high quality bases) assembled on 2006-01-06

> BO08272.5prime
GAAGTTATCAGTCGACATGGCGGAAGGTAATGGCGAACTGTTGGATGACA
TTAACCAGAAAGCCGATGACCGTGGCGATGGCGAGCGTACAGAGGATTAT
CCCAAGCTGCTGGAATACGGTCTGGACAAGAAGGTCGCCGGCAAACTGGA
TGAGATCTACAAAACCGGCAAGTTGGCTCACGCCGAGCTGGACGAGCGCG
CCCTGGACGCGCTCAAGGAGTTTCCCGTCGATGGTGCCTTGAATGTGTTG
GGACAGTTCCTGGAATCGAACCTGGAGCACGTGTCAAACAAGTCCGCCTA
CCTATGCGGCGTGATGAAGACGTACCGACAGAAGAGTCGAGCCAGCCAAC
AGGGCGTGGCCGCGCCCGCAACTGTCAAAGGTCCCGACGAGGACAAGATC
AAGAAAATCCTCGAGCGCACCGGCTACACATTAGATGTGACGACAGGTCA
GCGTAAATACGGCGGACCGCCGCCGCATTGGGAGGGAAATGTGCCAGGCA
ACGGTTGCGAGGTTTTCTGCGGCAAGATACCCAAGGACATGTACGAGGAC
GAACTGATTCCGCTATTCGAGAACTGCGGCATAATCTGGGACCTACGACT
CATGATGGACCCGATGACGGGCACAAATCGTGGTTATGCATTTGTCACAT
TCACAAATCGCGAAGCGGCCGTCAATGCAGTGCGACAGCTAAATGATTTT
GAAATTCGGACAGGCAAAAAGATTGGTGTTACGATATCATTTAACAATCA
CCGGCTATTTGTCGGCAATATACCTAAGAATAGAGATCGCGACGAATTAA
TTGAGGAATTTTCAAAACATGCACCTGGCCTATACGAGGTAATCATATAC
AGTTCGCCAGATGATAAGAAAAAGAATCGCGGCTTTTGCTTTCTTGAGTA
CGAGTCA

BO08272.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:20:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG17838-PB 1590 CG17838-RB 1..891 17..907 4455 100 Plus
CG17838-PA 1692 CG17838-RA 103..776 17..690 3370 100 Plus
CG17838-PC 1590 CG17838-RC 1..674 17..690 3370 100 Plus
CG17838-PF 1590 CG17838-RF 1..674 17..690 3370 100 Plus
CG17838-PD 2124 CG17838-RD 127..800 17..690 3370 100 Plus
CG17838-PE 1716 CG17838-RE 127..800 17..690 3370 100 Plus
CG17838-PA 1692 CG17838-RA 911..993 825..907 415 100 Plus
CG17838-PC 1590 CG17838-RC 809..891 825..907 415 100 Plus
CG17838-PF 1590 CG17838-RF 809..891 825..907 415 100 Plus
CG17838-PD 2124 CG17838-RD 935..1017 825..907 415 100 Plus
CG17838-PE 1716 CG17838-RE 935..1017 825..907 415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:10:27
Subject Length Description Subject Range Query Range Score Percent Strand
Syp-RM 3407 CG17838-RM 611..1501 17..907 4455 100 Plus
Syp-RJ 2610 CG17838-RJ 350..1240 17..907 4455 100 Plus
Syp-RC 2740 CG17838-RC 1050..1940 17..907 4455 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20791935..20792251 132..448 1585 100 Plus
3R 32079331 3R 20792311..20792555 444..688 1225 100 Plus
3R 32079331 3R 20795136..20795274 686..824 695 100 Plus
3R 32079331 3R 20791747..20791865 17..135 595 100 Plus
3R 32079331 3R 20797144..20797226 825..907 415 100 Plus
Blast to na_te.dros performed on 2015-02-11 22:10:26 has no hits.

BO08272.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:45 Download gff for BO08272.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17838-PB 1..890 17..906 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:35:20 Download gff for BO08272.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17838-PB 1..890 17..906 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:48:04 Download gff for BO08272.5prime
Subject Subject Range Query Range Percent Splice Strand
Syp-RC 1040..1939 8..906 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:50:43 Download gff for BO08272.5prime
Subject Subject Range Query Range Percent Splice Strand
Syp-RC 1040..1939 8..906 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:50:43 Download gff for BO08272.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20791744..20791863 14..133 99 -> Plus
3R 20791937..20792249 134..446 100 -> Plus
3R 20792314..20792555 447..688 100 -> Plus
3R 20795139..20795274 689..824 100 -> Plus
3R 20797144..20797225 825..906 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:48:04 Download gff for BO08272.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16617466..16617585 14..133 99 -> Plus
arm_3R 16617659..16617971 134..446 100 -> Plus
arm_3R 16618036..16618277 447..688 100 -> Plus
arm_3R 16620861..16620996 689..824 100 -> Plus
arm_3R 16622866..16622947 825..906 100   Plus

BO08272.complete Sequence

1621 bp (1621 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ631130

> BO08272.complete
GAAGTTATCAGTCGACATGGCGGAAGGTAATGGCGAACTGTTGGATGACA
TTAACCAGAAAGCCGATGACCGTGGCGATGGCGAGCGTACAGAGGATTAT
CCCAAGCTGCTGGAATACGGTCTGGACAAGAAGGTCGCCGGCAAACTGGA
TGAGATCTACAAAACCGGCAAGTTGGCTCACGCCGAGCTGGACGAGCGCG
CCCTGGACGCGCTCAAGGAGTTTCCCGTCGATGGTGCCTTGAATGTGTTG
GGACAGTTCCTGGAATCGAACCTGGAGCACGTGTCAAACAAGTCCGCCTA
CCTATGCGGCGTGATGAAGACGTACCGACAGAAGAGTCGAGCCAGCCAAC
AGGGCGTGGCCGCGCCCGCAACTGTCAAAGGTCCCGACGAGGACAAGATC
AAGAAAATCCTCGAGCGCACCGGCTACACATTAGATGTGACGACAGGTCA
GCGTAAATACGGCGGACCGCCGCCGCATTGGGAGGGAAATGTGCCAGGCA
ACGGTTGCGAGGTTTTCTGCGGCAAGATACCCAAGGACATGTACGAGGAC
GAACTGATTCCGCTATTCGAGAACTGCGGCATAATCTGGGACCTACGACT
CATGATGGACCCGATGACGGGCACAAATCGTGGTTATGCATTTGTCACAT
TCACAAATCGCGAAGCGGCCGTCAATGCAGTGCGACAGCTAAATGATTTT
GAAATTCGGACAGGCAAAAAGATTGGTGTTACGATATCATTTAACAATCA
CCGGCTATTTGTCGGCAATATACCTAAGAATAGAGATCGCGACGAATTAA
TTGAGGAATTTTCAAAACATGCACCTGGCCTATACGAGGTAATCATATAC
AGTTCGCCAGATGATAAGAAAAAGAATCGCGGCTTTTGCTTTCTTGAGTA
CGAGTCACACAAGGCGGCGTCTTTGGCCAAACGAAGACTTGGCACAGGAA
GAATTAAGGTTTGGGGATGTGATATAATAGTCGACTGGGCCGATCCACAG
GAGGAGCCGGATGAGCAAACAATGTCCAAGGTTAAAGTTCTTTATGTGCG
AAATCTTACCCAGGACGTCTCAGAGGATAAACTGAAGGAACAATTTGAGC
AATACGGAAAAGTGGAACGCGTTAAGAAAATTAAAGACTATGCCTTTATA
CACTTTGAGGATCGTGATAGCGCCGTCGAAGCTATGCGTGGCCTTAATGG
CAAGGAGATCGGCGCCTCGAATATTGAGGTCTCTCTAGCCAAACCCCCCT
CGGACAAAAAGAAAAAGGAGGAGATTCTGCGTGCTCGTGAGCGCCGCATG
ATGCAAATGATGCAAGCGCGTCCCGGGATCGTGGGAAACCTGTCGCCGAC
ACATCCTAGCATAATGTCCTTGACGCCCATGCGCCCAGGGGCGCGCATGC
CGCTGCGTACGCCGATACCCCGTGAATACGTAGTCGGTAAACGTAAGTTC
GATGGAGGTCACCAAAATCCGGCAGATGTTAAGCGACGTTACCCGAGCGG
TTTAATAGGAAATGGCGGCAGTTGGGGCAGTTTACCGCTACCACAGCAAC
CTTTAGGCACCAATGGTGAACAGTGGTACATGGATACGTTTTCGGCATGG
AGTGCAAGCTTTCTAGACCAT

BO08272.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:33:51
Subject Length Description Subject Range Query Range Score Percent Strand
Syp-RC 1590 CG17838-PC 1..1587 17..1603 7935 100 Plus
Syp-RM 2100 CG17838-PM 103..1516 17..1430 7070 100 Plus
Syp-RJ 2286 CG17838-PJ 127..1446 17..1336 6600 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:33:52
Subject Length Description Subject Range Query Range Score Percent Strand
Syp-RC 2740 CG17838-RC 1050..2636 17..1603 7935 100 Plus
Syp-RM 3407 CG17838-RM 611..2024 17..1430 7070 100 Plus
Syp-RJ 2610 CG17838-RJ 350..1669 17..1336 6600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:33:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20791935..20792251 132..448 1585 100 Plus
3R 32079331 3R 20792311..20792555 444..688 1225 100 Plus
3R 32079331 3R 20805946..20806119 1430..1603 870 100 Plus
3R 32079331 3R 20797534..20797678 1086..1230 725 100 Plus
3R 32079331 3R 20795136..20795274 686..824 695 100 Plus
3R 32079331 3R 20797144..20797279 825..960 680 100 Plus
3R 32079331 3R 20797343..20797474 957..1088 660 100 Plus
3R 32079331 3R 20791747..20791865 17..135 595 100 Plus
3R 32079331 3R 20797745..20797853 1227..1335 545 100 Plus
3R 32079331 3R 20798314..20798409 1335..1430 480 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:33:50 has no hits.

BO08272.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:56:39 Download gff for BO08272.complete
Subject Subject Range Query Range Percent Splice Strand
CG17838-RC 899..2485 17..1605 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:43 Download gff for BO08272.complete
Subject Subject Range Query Range Percent Splice Strand
Syp-RC 1050..2636 17..1605 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:40 Download gff for BO08272.complete
Subject Subject Range Query Range Percent Splice Strand
CG17838-RC 889..2488 8..1607 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:35 Download gff for BO08272.complete
Subject Subject Range Query Range Percent Splice Strand
Syp-RC 1050..2636 17..1605 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:35 Download gff for BO08272.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20791747..20791863 17..133 100 -> Plus
3R 20791937..20792249 134..446 100 -> Plus
3R 20792314..20792555 447..688 100 -> Plus
3R 20795139..20795274 689..824 100 -> Plus
3R 20797144..20797277 825..958 100 -> Plus
3R 20797345..20797473 959..1087 100 -> Plus
3R 20797536..20797676 1088..1228 100 -> Plus
3R 20797747..20797853 1229..1335 100 -> Plus
3R 20798315..20798409 1336..1430 100 -> Plus
3R 20805947..20806119 1431..1605 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:43 Download gff for BO08272.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16623067..16623195 959..1087 100 -> Plus
arm_3R 16623258..16623398 1088..1228 100 -> Plus
arm_3R 16623469..16623575 1229..1335 100 -> Plus
arm_3R 16624037..16624131 1336..1430 100 -> Plus
arm_3R 16631669..16631841 1431..1605 98   Plus
arm_3R 16618036..16618277 447..688 100 -> Plus
arm_3R 16617469..16617585 17..133 100 -> Plus
arm_3R 16617659..16617971 134..446 100 -> Plus
arm_3R 16620861..16620996 689..824 100 -> Plus
arm_3R 16622866..16622999 825..958 100 -> Plus

BO08272.pep Sequence

Translation from 16 to 1621

> BO08272.pep
MAEGNGELLDDINQKADDRGDGERTEDYPKLLEYGLDKKVAGKLDEIYKT
GKLAHAELDERALDALKEFPVDGALNVLGQFLESNLEHVSNKSAYLCGVM
KTYRQKSRASQQGVAAPATVKGPDEDKIKKILERTGYTLDVTTGQRKYGG
PPPHWEGNVPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPM
TGTNRGYAFVTFTNREAAVNAVRQLNDFEIRTGKKIGVTISFNNHRLFVG
NIPKNRDRDELIEEFSKHAPGLYEVIIYSSPDDKKKNRGFCFLEYESHKA
ASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQD
VSEDKLKEQFEQYGKVERVKKIKDYAFIHFEDRDSAVEAMRGLNGKEIGA
SNIEVSLAKPPSDKKKKEEILRARERRMMQMMQARPGIVGNLSPTHPSIM
SLTPMRPGARMPLRTPIPREYVVGKRKFDGGHQNPADVKRRYPSGLIGNG
GSWGSLPLPQQPLGTNGEQWYMDTFSAWSASFLDH

BO08272.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:20:17
Subject Length Description Subject Range Query Range Score Percent Strand
Syp-PC 529 CG17838-PC 1..529 1..529 2806 100 Plus
Syp-PH 534 CG17838-PH 6..534 1..529 2681 95.7 Plus
Syp-PE 571 CG17838-PE 43..571 1..529 2681 95.7 Plus
Syp-PF 529 CG17838-PF 1..529 1..529 2681 95.7 Plus
Syp-PA 563 CG17838-PA 35..563 1..529 2681 95.7 Plus