Clone BO08277 Report

Search the DGRC for BO08277

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:82
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG8654-RA
Protein status:BO08277.pep: validated full length
Sequenced Size:1540

Clone Sequence Records

BO08277.3prime Sequence

901 bp (829 high quality bases) assembled on 2006-01-06

> BO08277.3prime
ATGGTCTAGAAAGCTTGCTGCCTGGTCCTTCTTTTTACGCCCGAATGTCT
CTCCGTCCTCCAGGGTTTCCGGCAGTGGAGTTCCACGTGTCTCCGGCAAG
AAAATTGTGCCGAGCATTGCCAGAATGGAGAAAATTCCAAAGATCAGGGG
CGCCACCCACAGACCGTATGCAGCCAGATCGACGATGAGCGGAGCAACAA
TGGAACCTATTCGACCGACCATCGAGCAGAGACCAACCCCACTGGAACGC
ACAACCGTGGGAAAGAGCTCTCCGCCGTACAAGTAGACATTCGGAAAGGT
GATTGATGCGCCAAAAAGTCCAATTGTGGCGCAGGTCACACGCACAGCCT
CTGCCTGAGTAGAAAGGCATGCCAATAGGATTAAGCCCAAAGCACTGCAT
CCATTGGAAAGAAGCAGGGTCTTCTTGCGTCCGAGGTACTTGGTCATGAG
CGCACAGAGGCATGTGCCTGGAATGCCCACTCCGGCGGCGATTGCATTGC
TGATGAAGATGTTGCCGCCCAGCGCGGAGACATACTGAGCGGTGCCGTAG
TAGACCATGCAAACCACTAGCCAATTGTTTGCCATGAATATGGTCTTTAT
CCGCATATAGGGTGTCCGGAATAGATCCACGACGGTGCCTTTTTTGACCG
GCTGGCGGGCTGCCAGTGCCCCATAGGCAGCTTCGATCTCCGGCCGAATC
GTTTCCGTCGGAGCCTTATTACACTTGGCGATCTTCTCCAGAATCTTTAT
GGACTTGTCCAGCTTGCCGGTGGTAAAGAGCCAGCGTGGCGACTCGGGAA
CCAGCCAAATGTAGATCACGAACACGATAGAGAAAATGGTGATGCTGAAC
TGGAACCAGCGCCATTCTCGAATAAAGTANGCAAACAGGGCCAGGGAGGC
G

BO08277.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG8654-PA 1509 CG8654-RA 624..1506 901..19 4396 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:38:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG8654-RD 2938 CG8654-RD 1384..2266 901..19 4404 99.9 Minus
CG8654-RC 2402 CG8654-RC 703..1585 901..19 4404 99.9 Minus
CG8654-RB 2284 CG8654-RB 730..1612 901..19 4404 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:38:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19983196..19984078 901..19 4404 99.9 Minus
Blast to na_te.dros performed on 2015-02-04 20:38:22 has no hits.

BO08277.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:50 Download gff for BO08277.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8654-PA 624..1509 18..901 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:35:28 Download gff for BO08277.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8654-PA 624..1509 18..901 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:28:18 Download gff for BO08277.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8654-RB 730..1621 10..901 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:52:57 Download gff for BO08277.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8654-RB 730..1621 10..901 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:52:57 Download gff for BO08277.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 19983196..19984087 10..901 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:28:18 Download gff for BO08277.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15870701..15871592 10..901 99   Minus

BO08277.5prime Sequence

910 bp (833 high quality bases) assembled on 2006-01-06

> BO08277.5prime
GAAGTTATCAGTCGACATGGCCGATCGACCGCAGGATCCAAAGGCTCCAA
AGCCACTGAAACCCGTCACCAAGACAGGTGATCCGATAATTTCGCAGATC
GGCGACTTCCGGCGCTACCAGTTATTCTTTTTCTTCATCGTTCTACTGTG
CAAATTTGGCACGGGATGGCACACCCTCGGCCACATATTCCTCGCAGCAC
CAACGCCGTTATCCTGCAAGACAGAGAACGTCACGGATCCCTGCAGTGAC
GAATGCTCCGAGACCGAGTTCGACACTAGCGTCTTCCAATCCACCATCAT
AACCGAGTGGAATCTCACCTGCGAAAGCAAACAGCTGGCTAGCTTGTCCC
AAAGTATCGTCATGCTGGGCATTTTGTTCGGGAGTATTCTGTTTGGCATG
TTCGCTGATCGGTATGGACGACGCCCTGCCTTCCTGACGTGCTGCTTCAT
GCAGCTGATCACTGGCCTCATCGTCTGCGTATCCCCCTACTACTGGTTCT
ATTGCCTCTTTAGGTTCCTGGTGGCTGTGGCCACGGCGGGAACGATGACC
ACCAGTTTCGTCTTGCTGATGGAAATCGTGGGACCCAAAAAGCGCGAAAT
GGTAGCCATTCTCTACCAAATCCCCTTTAACATCGGCCACGCCTCCCTGG
CCCTGTTTGCCTACTTTATTCGAGAATGGCGCTGGTTCCAGTTCAGCATC
ACCATTTTCTCTATCGTGTTCGTGATCTACATTTGGCTGGTTCCCGAGTC
GCCACGCTGGCTCTTTACCACCGGCAAGCTGGACAAGTCCATAAAGATTC
TGGAGAAGATCGCCAAGTGTAATAAGGCTCCGACGGAAACGATTCGGCCG
GAGATCGAAGCTGCCTATGGGGCACTGGCAGCCCGCCAGCCGGTCAAAAA
AGGCACCGTC

BO08277.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8654-PA 1509 CG8654-RA 1..894 17..910 4470 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:10:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG8654-RD 2938 CG8654-RD 748..1654 3..910 4485 99.7 Plus
CG8654-RC 2402 CG8654-RC 67..973 3..910 4485 99.7 Plus
CG8654-RA 2395 CG8654-RA 205..1111 3..910 4485 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:10:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19982307..19982705 15..413 1995 100 Plus
2R 25286936 2R 19983109..19983466 553..910 1790 100 Plus
2R 25286936 2R 19982905..19983049 411..555 725 100 Plus
Blast to na_te.dros performed on 2015-02-11 22:10:36 has no hits.

BO08277.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:51 Download gff for BO08277.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8654-PA 1..894 17..910 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:35:29 Download gff for BO08277.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8654-PA 1..894 17..910 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:48:07 Download gff for BO08277.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8654-RA 203..1111 1..910 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:51:11 Download gff for BO08277.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8654-RA 203..1111 1..910 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:51:11 Download gff for BO08277.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 19982294..19982703 1..411 98 -> Plus
2R 19982906..19983049 412..555 100 -> Plus
2R 19983112..19983466 556..910 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:48:07 Download gff for BO08277.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15869799..15870208 1..411 98 -> Plus
arm_2R 15870411..15870554 412..555 100 -> Plus
arm_2R 15870617..15870971 556..910 100   Plus

BO08277.complete Sequence

1540 bp (1540 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ631131

> BO08277.complete
GAAGTTATCAGTCGACATGGCCGATCGACCGCAGGATCCAAAGGCTCCAA
AGCCACTGAAACCCGTCACCAAGACAGGTGATCCGATAATTTCGCAGATC
GGCGACTTCCGGCGCTACCAGTTATTCTTTTTCTTCATCGTTCTACTGTG
CAAATTTGGCACGGGATGGCACACCCTCGGCCACATATTCCTCGCAGCAC
CAACGCCGTTATCCTGCAAGACAGAGAACGTCACGGATCCCTGCAGTGAC
GAATGCTCCGAGACCGAGTTCGACACTAGCGTCTTCCAATCCACCATCAT
AACCGAGTGGAATCTCACCTGCGAAAGCAAACAGCTGGCTAGCTTGTCCC
AAAGTATCGTCATGCTGGGCATTTTGTTCGGGAGTATTCTGTTTGGCATG
TTCGCTGATCGGTATGGACGACGCCCTGCCTTCCTGACGTGCTGCTTCAT
GCAGCTGATCACTGGCCTCATCGTCTGCGTATCCCCCTACTACTGGTTCT
ATTGCCTCTTTAGGTTCCTGGTGGCTGTGGCCACGGCGGGAACGATGACC
ACCAGTTTCGTCTTGCTGATGGAAATCGTGGGACCCAAAAAGCGCGAAAT
GGTAGCCATTCTCTACCAAATCCCCTTTAACATCGGCCACGCCTCCCTGG
CCCTGTTTGCCTACTTTATTCGAGAATGGCGCTGGTTCCAGTTCAGCATC
ACCATTTTCTCTATCGTGTTCGTGATCTACATTTGGCTGGTTCCCGAGTC
GCCACGCTGGCTCTTTACCACCGGCAAGCTGGACAAGTCCATAAAGATTC
TGGAGAAGATCGCCAAGTGTAATAAGGCTCCGACGGAAACGATTCGGCCG
GAGATCGAAGCTGCCTATGGGGCACTGGCAGCCCGCCAGCCGGTCAAAAA
AGGCACCGTCGTGGATCTATTCCGGACACCCTATATGCGGATAAAGACCA
TATTCATGGCAAACAATTGGCTAGTGGTTTGCATGGTCTACTACGGCACC
GCTCAGTATGTCTCCGCGCTGGGCGGCAACATCTTCATCAGCAATGCAAT
CGCCGCCGGAGTGGGCATTCCAGGCACATGCCTCTGTGCGCTCATGACCA
AGTACCTCGGACGCAAGAAGACCCTGCTTCTTTCCAATGGATGCAGTGCT
TTGGGCTTAATCCTATTGGCATGCCTTTCTACTCAGGCAGAGGCTGTGCG
TGTGACCTGCGCCACAATTGGACTTTTTGGCGCATCAATCACCTTTCCGA
ATGTCTACTTGTACGGCGGAGAGCTCTTTCCCACGGTTGTGCGTTCCAGT
GGGGTTGGTCTCTGCTCGATGGTCGGTCGAATAGGTTCCATTGTTGCTCC
GCTCATCGTCGATCTGGCTGCATACGGTCTGTGGGTGGCGCCCCTGATCT
TTGGAATTTTCTCCATTCTGGCAATGCTCGGCACAATTTTCTTGCCGGAG
ACACGTGGAACTCCACTGCCGGAAACCCTGGAGGACGGAGAGACATTCGG
GCGTAAAAAGAAGGACCAGGCAGCAAGCTTTCTAGACCAT

BO08277.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:49:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG8654-RD 1509 CG8654-PD 1..1506 17..1522 7530 100 Plus
CG8654-RC 1509 CG8654-PC 1..1506 17..1522 7530 100 Plus
CG8654-RB 1509 CG8654-PB 1..1506 17..1522 7530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:49:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG8654-RD 2938 CG8654-RD 759..2266 15..1522 7540 100 Plus
CG8654-RC 2402 CG8654-RC 78..1585 15..1522 7540 100 Plus
CG8654-RB 2284 CG8654-RB 105..1612 15..1522 7540 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:49:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19983109..19984078 553..1522 4850 100 Plus
2R 25286936 2R 19982307..19982705 15..413 1995 100 Plus
2R 25286936 2R 19982905..19983049 411..555 725 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:49:45 has no hits.

BO08277.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:41 Download gff for BO08277.complete
Subject Subject Range Query Range Percent Splice Strand
CG8654-RA 1..1509 17..1523 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:31:18 Download gff for BO08277.complete
Subject Subject Range Query Range Percent Splice Strand
CG8654-RA 204..1733 1..1531 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:39:12 Download gff for BO08277.complete
Subject Subject Range Query Range Percent Splice Strand
CG8654-RB 107..1612 17..1524 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:42 Download gff for BO08277.complete
Subject Subject Range Query Range Percent Splice Strand
CG8654-RA 204..1733 1..1531 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:13 Download gff for BO08277.complete
Subject Subject Range Query Range Percent Splice Strand
CG8654-RB 107..1612 17..1524 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:13 Download gff for BO08277.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19982906..19983049 412..555 100 -> Plus
2R 19982309..19982703 17..411 100 -> Plus
2R 19983112..19984078 556..1524 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:39:12 Download gff for BO08277.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15869814..15870208 17..411 100 -> Plus
arm_2R 15870411..15870554 412..555 100 -> Plus
arm_2R 15870617..15871583 556..1524 99   Plus

BO08277.pep Sequence

Translation from 16 to 1540

> BO08277.pep
MADRPQDPKAPKPLKPVTKTGDPIISQIGDFRRYQLFFFFIVLLCKFGTG
WHTLGHIFLAAPTPLSCKTENVTDPCSDECSETEFDTSVFQSTIITEWNL
TCESKQLASLSQSIVMLGILFGSILFGMFADRYGRRPAFLTCCFMQLITG
LIVCVSPYYWFYCLFRFLVAVATAGTMTTSFVLLMEIVGPKKREMVAILY
QIPFNIGHASLALFAYFIREWRWFQFSITIFSIVFVIYIWLVPESPRWLF
TTGKLDKSIKILEKIAKCNKAPTETIRPEIEAAYGALAARQPVKKGTVVD
LFRTPYMRIKTIFMANNWLVVCMVYYGTAQYVSALGGNIFISNAIAAGVG
IPGTCLCALMTKYLGRKKTLLLSNGCSALGLILLACLSTQAEAVRVTCAT
IGLFGASITFPNVYLYGGELFPTVVRSSGVGLCSMVGRIGSIVAPLIVDL
AAYGLWVAPLIFGIFSILAMLGTIFLPETRGTPLPETLEDGETFGRKKKD
QAASFLDH

BO08277.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:20:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG8654-PD 502 CG8654-PD 1..502 1..502 2627 100 Plus
CG8654-PC 502 CG8654-PC 1..502 1..502 2627 100 Plus
CG8654-PB 502 CG8654-PB 1..502 1..502 2627 100 Plus
CG8654-PA 502 CG8654-PA 1..502 1..502 2627 100 Plus
Orct-PB 548 CG6331-PB 4..528 22..501 765 32.8 Plus