Clone Sequence Records
BO08277.3prime Sequence
901 bp (829 high quality bases) assembled on 2006-01-06
> BO08277.3prime
ATGGTCTAGAAAGCTTGCTGCCTGGTCCTTCTTTTTACGCCCGAATGTCT
CTCCGTCCTCCAGGGTTTCCGGCAGTGGAGTTCCACGTGTCTCCGGCAAG
AAAATTGTGCCGAGCATTGCCAGAATGGAGAAAATTCCAAAGATCAGGGG
CGCCACCCACAGACCGTATGCAGCCAGATCGACGATGAGCGGAGCAACAA
TGGAACCTATTCGACCGACCATCGAGCAGAGACCAACCCCACTGGAACGC
ACAACCGTGGGAAAGAGCTCTCCGCCGTACAAGTAGACATTCGGAAAGGT
GATTGATGCGCCAAAAAGTCCAATTGTGGCGCAGGTCACACGCACAGCCT
CTGCCTGAGTAGAAAGGCATGCCAATAGGATTAAGCCCAAAGCACTGCAT
CCATTGGAAAGAAGCAGGGTCTTCTTGCGTCCGAGGTACTTGGTCATGAG
CGCACAGAGGCATGTGCCTGGAATGCCCACTCCGGCGGCGATTGCATTGC
TGATGAAGATGTTGCCGCCCAGCGCGGAGACATACTGAGCGGTGCCGTAG
TAGACCATGCAAACCACTAGCCAATTGTTTGCCATGAATATGGTCTTTAT
CCGCATATAGGGTGTCCGGAATAGATCCACGACGGTGCCTTTTTTGACCG
GCTGGCGGGCTGCCAGTGCCCCATAGGCAGCTTCGATCTCCGGCCGAATC
GTTTCCGTCGGAGCCTTATTACACTTGGCGATCTTCTCCAGAATCTTTAT
GGACTTGTCCAGCTTGCCGGTGGTAAAGAGCCAGCGTGGCGACTCGGGAA
CCAGCCAAATGTAGATCACGAACACGATAGAGAAAATGGTGATGCTGAAC
TGGAACCAGCGCCATTCTCGAATAAAGTANGCAAACAGGGCCAGGGAGGC
G
BO08277.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8654-PA | 1509 | CG8654-RA | 624..1506 | 901..19 | 4396 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:38:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8654-RD | 2938 | CG8654-RD | 1384..2266 | 901..19 | 4404 | 99.9 | Minus |
CG8654-RC | 2402 | CG8654-RC | 703..1585 | 901..19 | 4404 | 99.9 | Minus |
CG8654-RB | 2284 | CG8654-RB | 730..1612 | 901..19 | 4404 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:38:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19983196..19984078 | 901..19 | 4404 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-04 20:38:22 has no hits.
BO08277.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:50 Download gff for
BO08277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8654-PA | 624..1509 | 18..901 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:35:28 Download gff for
BO08277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8654-PA | 624..1509 | 18..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:28:18 Download gff for
BO08277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8654-RB | 730..1621 | 10..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:52:57 Download gff for
BO08277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8654-RB | 730..1621 | 10..901 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:52:57 Download gff for
BO08277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19983196..19984087 | 10..901 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:28:18 Download gff for
BO08277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15870701..15871592 | 10..901 | 99 | | Minus |
BO08277.5prime Sequence
910 bp (833 high quality bases) assembled on 2006-01-06
> BO08277.5prime
GAAGTTATCAGTCGACATGGCCGATCGACCGCAGGATCCAAAGGCTCCAA
AGCCACTGAAACCCGTCACCAAGACAGGTGATCCGATAATTTCGCAGATC
GGCGACTTCCGGCGCTACCAGTTATTCTTTTTCTTCATCGTTCTACTGTG
CAAATTTGGCACGGGATGGCACACCCTCGGCCACATATTCCTCGCAGCAC
CAACGCCGTTATCCTGCAAGACAGAGAACGTCACGGATCCCTGCAGTGAC
GAATGCTCCGAGACCGAGTTCGACACTAGCGTCTTCCAATCCACCATCAT
AACCGAGTGGAATCTCACCTGCGAAAGCAAACAGCTGGCTAGCTTGTCCC
AAAGTATCGTCATGCTGGGCATTTTGTTCGGGAGTATTCTGTTTGGCATG
TTCGCTGATCGGTATGGACGACGCCCTGCCTTCCTGACGTGCTGCTTCAT
GCAGCTGATCACTGGCCTCATCGTCTGCGTATCCCCCTACTACTGGTTCT
ATTGCCTCTTTAGGTTCCTGGTGGCTGTGGCCACGGCGGGAACGATGACC
ACCAGTTTCGTCTTGCTGATGGAAATCGTGGGACCCAAAAAGCGCGAAAT
GGTAGCCATTCTCTACCAAATCCCCTTTAACATCGGCCACGCCTCCCTGG
CCCTGTTTGCCTACTTTATTCGAGAATGGCGCTGGTTCCAGTTCAGCATC
ACCATTTTCTCTATCGTGTTCGTGATCTACATTTGGCTGGTTCCCGAGTC
GCCACGCTGGCTCTTTACCACCGGCAAGCTGGACAAGTCCATAAAGATTC
TGGAGAAGATCGCCAAGTGTAATAAGGCTCCGACGGAAACGATTCGGCCG
GAGATCGAAGCTGCCTATGGGGCACTGGCAGCCCGCCAGCCGGTCAAAAA
AGGCACCGTC
BO08277.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8654-PA | 1509 | CG8654-RA | 1..894 | 17..910 | 4470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:10:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8654-RD | 2938 | CG8654-RD | 748..1654 | 3..910 | 4485 | 99.7 | Plus |
CG8654-RC | 2402 | CG8654-RC | 67..973 | 3..910 | 4485 | 99.7 | Plus |
CG8654-RA | 2395 | CG8654-RA | 205..1111 | 3..910 | 4485 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:10:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19982307..19982705 | 15..413 | 1995 | 100 | Plus |
2R | 25286936 | 2R | 19983109..19983466 | 553..910 | 1790 | 100 | Plus |
2R | 25286936 | 2R | 19982905..19983049 | 411..555 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:10:36 has no hits.
BO08277.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:51 Download gff for
BO08277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8654-PA | 1..894 | 17..910 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:35:29 Download gff for
BO08277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8654-PA | 1..894 | 17..910 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:48:07 Download gff for
BO08277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8654-RA | 203..1111 | 1..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:51:11 Download gff for
BO08277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8654-RA | 203..1111 | 1..910 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:51:11 Download gff for
BO08277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19982294..19982703 | 1..411 | 98 | -> | Plus |
2R | 19982906..19983049 | 412..555 | 100 | -> | Plus |
2R | 19983112..19983466 | 556..910 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:48:07 Download gff for
BO08277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15869799..15870208 | 1..411 | 98 | -> | Plus |
arm_2R | 15870411..15870554 | 412..555 | 100 | -> | Plus |
arm_2R | 15870617..15870971 | 556..910 | 100 | | Plus |
BO08277.complete Sequence
1540 bp (1540 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631131
> BO08277.complete
GAAGTTATCAGTCGACATGGCCGATCGACCGCAGGATCCAAAGGCTCCAA
AGCCACTGAAACCCGTCACCAAGACAGGTGATCCGATAATTTCGCAGATC
GGCGACTTCCGGCGCTACCAGTTATTCTTTTTCTTCATCGTTCTACTGTG
CAAATTTGGCACGGGATGGCACACCCTCGGCCACATATTCCTCGCAGCAC
CAACGCCGTTATCCTGCAAGACAGAGAACGTCACGGATCCCTGCAGTGAC
GAATGCTCCGAGACCGAGTTCGACACTAGCGTCTTCCAATCCACCATCAT
AACCGAGTGGAATCTCACCTGCGAAAGCAAACAGCTGGCTAGCTTGTCCC
AAAGTATCGTCATGCTGGGCATTTTGTTCGGGAGTATTCTGTTTGGCATG
TTCGCTGATCGGTATGGACGACGCCCTGCCTTCCTGACGTGCTGCTTCAT
GCAGCTGATCACTGGCCTCATCGTCTGCGTATCCCCCTACTACTGGTTCT
ATTGCCTCTTTAGGTTCCTGGTGGCTGTGGCCACGGCGGGAACGATGACC
ACCAGTTTCGTCTTGCTGATGGAAATCGTGGGACCCAAAAAGCGCGAAAT
GGTAGCCATTCTCTACCAAATCCCCTTTAACATCGGCCACGCCTCCCTGG
CCCTGTTTGCCTACTTTATTCGAGAATGGCGCTGGTTCCAGTTCAGCATC
ACCATTTTCTCTATCGTGTTCGTGATCTACATTTGGCTGGTTCCCGAGTC
GCCACGCTGGCTCTTTACCACCGGCAAGCTGGACAAGTCCATAAAGATTC
TGGAGAAGATCGCCAAGTGTAATAAGGCTCCGACGGAAACGATTCGGCCG
GAGATCGAAGCTGCCTATGGGGCACTGGCAGCCCGCCAGCCGGTCAAAAA
AGGCACCGTCGTGGATCTATTCCGGACACCCTATATGCGGATAAAGACCA
TATTCATGGCAAACAATTGGCTAGTGGTTTGCATGGTCTACTACGGCACC
GCTCAGTATGTCTCCGCGCTGGGCGGCAACATCTTCATCAGCAATGCAAT
CGCCGCCGGAGTGGGCATTCCAGGCACATGCCTCTGTGCGCTCATGACCA
AGTACCTCGGACGCAAGAAGACCCTGCTTCTTTCCAATGGATGCAGTGCT
TTGGGCTTAATCCTATTGGCATGCCTTTCTACTCAGGCAGAGGCTGTGCG
TGTGACCTGCGCCACAATTGGACTTTTTGGCGCATCAATCACCTTTCCGA
ATGTCTACTTGTACGGCGGAGAGCTCTTTCCCACGGTTGTGCGTTCCAGT
GGGGTTGGTCTCTGCTCGATGGTCGGTCGAATAGGTTCCATTGTTGCTCC
GCTCATCGTCGATCTGGCTGCATACGGTCTGTGGGTGGCGCCCCTGATCT
TTGGAATTTTCTCCATTCTGGCAATGCTCGGCACAATTTTCTTGCCGGAG
ACACGTGGAACTCCACTGCCGGAAACCCTGGAGGACGGAGAGACATTCGG
GCGTAAAAAGAAGGACCAGGCAGCAAGCTTTCTAGACCAT
BO08277.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:49:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8654-RD | 1509 | CG8654-PD | 1..1506 | 17..1522 | 7530 | 100 | Plus |
CG8654-RC | 1509 | CG8654-PC | 1..1506 | 17..1522 | 7530 | 100 | Plus |
CG8654-RB | 1509 | CG8654-PB | 1..1506 | 17..1522 | 7530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:49:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8654-RD | 2938 | CG8654-RD | 759..2266 | 15..1522 | 7540 | 100 | Plus |
CG8654-RC | 2402 | CG8654-RC | 78..1585 | 15..1522 | 7540 | 100 | Plus |
CG8654-RB | 2284 | CG8654-RB | 105..1612 | 15..1522 | 7540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:49:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19983109..19984078 | 553..1522 | 4850 | 100 | Plus |
2R | 25286936 | 2R | 19982307..19982705 | 15..413 | 1995 | 100 | Plus |
2R | 25286936 | 2R | 19982905..19983049 | 411..555 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:49:45 has no hits.
BO08277.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:41 Download gff for
BO08277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8654-RA | 1..1509 | 17..1523 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:31:18 Download gff for
BO08277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8654-RA | 204..1733 | 1..1531 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:39:12 Download gff for
BO08277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8654-RB | 107..1612 | 17..1524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:42 Download gff for
BO08277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8654-RA | 204..1733 | 1..1531 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:13 Download gff for
BO08277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8654-RB | 107..1612 | 17..1524 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:13 Download gff for
BO08277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19982906..19983049 | 412..555 | 100 | -> | Plus |
2R | 19982309..19982703 | 17..411 | 100 | -> | Plus |
2R | 19983112..19984078 | 556..1524 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:39:12 Download gff for
BO08277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15869814..15870208 | 17..411 | 100 | -> | Plus |
arm_2R | 15870411..15870554 | 412..555 | 100 | -> | Plus |
arm_2R | 15870617..15871583 | 556..1524 | 99 | | Plus |
BO08277.pep Sequence
Translation from 16 to 1540
> BO08277.pep
MADRPQDPKAPKPLKPVTKTGDPIISQIGDFRRYQLFFFFIVLLCKFGTG
WHTLGHIFLAAPTPLSCKTENVTDPCSDECSETEFDTSVFQSTIITEWNL
TCESKQLASLSQSIVMLGILFGSILFGMFADRYGRRPAFLTCCFMQLITG
LIVCVSPYYWFYCLFRFLVAVATAGTMTTSFVLLMEIVGPKKREMVAILY
QIPFNIGHASLALFAYFIREWRWFQFSITIFSIVFVIYIWLVPESPRWLF
TTGKLDKSIKILEKIAKCNKAPTETIRPEIEAAYGALAARQPVKKGTVVD
LFRTPYMRIKTIFMANNWLVVCMVYYGTAQYVSALGGNIFISNAIAAGVG
IPGTCLCALMTKYLGRKKTLLLSNGCSALGLILLACLSTQAEAVRVTCAT
IGLFGASITFPNVYLYGGELFPTVVRSSGVGLCSMVGRIGSIVAPLIVDL
AAYGLWVAPLIFGIFSILAMLGTIFLPETRGTPLPETLEDGETFGRKKKD
QAASFLDH
BO08277.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:20:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8654-PD | 502 | CG8654-PD | 1..502 | 1..502 | 2627 | 100 | Plus |
CG8654-PC | 502 | CG8654-PC | 1..502 | 1..502 | 2627 | 100 | Plus |
CG8654-PB | 502 | CG8654-PB | 1..502 | 1..502 | 2627 | 100 | Plus |
CG8654-PA | 502 | CG8654-PA | 1..502 | 1..502 | 2627 | 100 | Plus |
Orct-PB | 548 | CG6331-PB | 4..528 | 22..501 | 765 | 32.8 | Plus |