Clone Sequence Records
BO08278.5prime Sequence
596 bp (595 high quality bases) assembled on 2006-01-06
> BO08278.5prime
GAAGTTATCAGTCGACATGGCGTCCAACCGTGCAGCGAAGTCTGGTTTTG
CCGCCGAGGCCCAGCGCAAAATTAACTCCAAGTACAGCGAGGAGCTGGCC
CAGGAGAGCCTCGAGTGGATCAAGGCCGTCACCGAGGAGCCCATCAACAC
ATCCGGCGACACCGACAACTTCTTCGAGGTGCTCAAGGATGGCGTCATCC
TGTGCAAGCTGGCCAACGCCCTGCAGCCCGGCTCCATCAAGAAGATCAAC
GAGAGCAAAATGGCCTTCAAGTGCATGGAGAACATCTCGGCCTTCCTCGC
GTGCGCCAAGAACTTCGGTGTCCCCACCCAGGAGACCTTCCAGAGCGTCG
ACCTGTGGGAGCGCCAGAATCTGAACTCGGTGGTTATCTGCCTGCAGTCG
CTGGGTCGCAAGGCCTCCAACTTCAACAAGCCATCGATTGGCCCCAAGGA
GGCCGACAAGAATGTGAGGAACTTCAGCGACGAGCAGCTGCGCGCCGGCG
CCAACGTCATCTCCCTGCAGTACGGATCGAACAAGGGCGCCACCCAGTCG
GGCATCAACTTCGGCAACACCCGGCACATGGCAAGCTTTCTAGACC
BO08278.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14996-PB | 567 | Chd64-RB | 1..564 | 17..580 | 2820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:10:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Chd64-RB | 1429 | CG14996-RB | 180..743 | 17..580 | 2820 | 100 | Plus |
Chd64-RC | 1226 | CG14996-RC | 27..540 | 67..580 | 2555 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:10:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4115304..4115646 | 413..71 | 1715 | 100 | Minus |
3L | 28110227 | 3L | 4114975..4115144 | 580..411 | 850 | 100 | Minus |
3L | 28110227 | 3L | 4122156..4122209 | 70..17 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:10:47 has no hits.
BO08278.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:52 Download gff for
BO08278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chd64-PB | 1..567 | 17..581 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:35:32 Download gff for
BO08278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14996-PB | 1..567 | 17..581 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:48:09 Download gff for
BO08278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chd64-RB | 180..743 | 17..580 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:51:38 Download gff for
BO08278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chd64-RB | 180..743 | 17..580 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:51:38 Download gff for
BO08278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4114975..4115142 | 413..580 | 100 | <- | Minus |
3L | 4115305..4115646 | 71..412 | 100 | <- | Minus |
3L | 4122156..4122209 | 17..70 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:48:09 Download gff for
BO08278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4114975..4115142 | 413..580 | 100 | <- | Minus |
arm_3L | 4115305..4115646 | 71..412 | 100 | <- | Minus |
arm_3L | 4122156..4122209 | 17..70 | 100 | | Minus |
BO08278.3prime Sequence
596 bp (595 high quality bases) assembled on 2006-01-06
> BO08278.3prime
ATGGTCTAGAAAGCTTGCCATGTGCCGGGTGTTGCCGAAGTTGATGCCCG
ACTGGGTGGCGCCCTTGTTCGATCCGTACTGCAGGGAGATGACGTTGGCG
CCGGCGCGCAGCTGCTCGTCGCTGAAGTTCCTCACATTCTTGTCGGCCTC
CTTGGGGCCAATCGATGGCTTGTTGAAGTTGGAGGCCTTGCGACCCAGCG
ACTGCAGGCAGATAACCACCGAGTTCAGATTCTGGCGCTCCCACAGGTCG
ACGCTCTGGAAGGTCTCCTGGGTGGGGACACCGAAGTTCTTGGCGCACGC
GAGGAAGGCCGAGATGTTCTCCATGCACTTGAAGGCCATTTTGCTCTCGT
TGATCTTCTTGATGGAGCCGGGCTGCAGGGCGTTGGCCAGCTTGCACAGG
ATGACGCCATCCTTGAGCACCTCGAAGAAGTTGTCGGTGTCGCCGGATGT
GTTGATGGGCTCCTCGGTGACGGCCTTGATCCACTCGAGGCTCTCCTGGG
CCAGCTCCTCGCTGTACTTGGAGTTAATTTTGCGCTGGGCCTCGGCGGCA
AAACCAGACTTCGCTGCACGGTTGGACGCCATGTCGACTGATAACT
BO08278.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14996-PB | 567 | Chd64-RB | 1..564 | 582..19 | 2820 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:55:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Chd64-RB | 1429 | CG14996-RB | 180..743 | 582..19 | 2820 | 100 | Minus |
Chd64-RC | 1226 | CG14996-RC | 27..540 | 532..19 | 2555 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:55:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4115304..4115646 | 186..528 | 1715 | 100 | Plus |
3L | 28110227 | 3L | 4114975..4115144 | 19..188 | 850 | 100 | Plus |
3L | 28110227 | 3L | 4122156..4122209 | 529..582 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 15:55:48 has no hits.
BO08278.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:51 Download gff for
BO08278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chd64-PB | 1..567 | 18..582 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:35:31 Download gff for
BO08278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14996-PB | 1..567 | 18..582 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:10:30 Download gff for
BO08278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chd64-RB | 180..743 | 19..582 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:27:08 Download gff for
BO08278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chd64-RB | 180..743 | 19..582 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:27:08 Download gff for
BO08278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4114975..4115142 | 19..186 | 100 | <- | Plus |
3L | 4115305..4115646 | 187..528 | 100 | <- | Plus |
3L | 4122156..4122209 | 529..582 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:10:30 Download gff for
BO08278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4115305..4115646 | 187..528 | 100 | <- | Plus |
arm_3L | 4122156..4122209 | 529..582 | 100 | | Plus |
arm_3L | 4114975..4115142 | 19..186 | 100 | <- | Plus |
BO08278.complete Sequence
598 bp (598 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631132
> BO08278.complete
GAAGTTATCAGTCGACATGGCGTCCAACCGTGCAGCGAAGTCTGGTTTTG
CCGCCGAGGCCCAGCGCAAAATTAACTCCAAGTACAGCGAGGAGCTGGCC
CAGGAGAGCCTCGAGTGGATCAAGGCCGTCACCGAGGAGCCCATCAACAC
ATCCGGCGACACCGACAACTTCTTCGAGGTGCTCAAGGATGGCGTCATCC
TGTGCAAGCTGGCCAACGCCCTGCAGCCCGGCTCCATCAAGAAGATCAAC
GAGAGCAAAATGGCCTTCAAGTGCATGGAGAACATCTCGGCCTTCCTCGC
GTGCGCCAAGAACTTCGGTGTCCCCACCCAGGAGACCTTCCAGAGCGTCG
ACCTGTGGGAGCGCCAGAATCTGAACTCGGTGGTTATCTGCCTGCAGTCG
CTGGGTCGCAAGGCCTCCAACTTCAACAAGCCATCGATTGGCCCCAAGGA
GGCCGACAAGAATGTGAGGAACTTCAGCGACGAGCAGCTGCGCGCCGGCG
CCAACGTCATCTCCCTGCAGTACGGATCGAACAAGGGCGCCACCCAGTCG
GGCATCAACTTCGGCAACACCCGGCACATGGCAAGCTTTCTAGACCAT
BO08278.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:48:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Chd64-RB | 567 | CG14996-PB | 1..564 | 17..580 | 2820 | 100 | Plus |
Chd64-RC | 528 | CG14996-PC | 12..525 | 67..580 | 2555 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:48:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Chd64-RB | 1429 | CG14996-RB | 180..743 | 17..580 | 2820 | 100 | Plus |
Chd64-RC | 1226 | CG14996-RC | 27..540 | 67..580 | 2555 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:48:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4115304..4115646 | 413..71 | 1715 | 100 | Minus |
3L | 28110227 | 3L | 4114975..4115144 | 580..411 | 850 | 100 | Minus |
3L | 28110227 | 3L | 4122156..4122209 | 70..17 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:48:54 has no hits.
BO08278.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:32 Download gff for
BO08278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chd64-RB | 1..567 | 17..581 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:06:55 Download gff for
BO08278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chd64-RB | 215..778 | 17..580 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:36 Download gff for
BO08278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chd64-RB | 180..743 | 17..582 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:32 Download gff for
BO08278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chd64-RB | 215..778 | 17..580 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:36 Download gff for
BO08278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chd64-RB | 180..743 | 17..582 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:36 Download gff for
BO08278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4114973..4115142 | 413..582 | 98 | <- | Minus |
3L | 4115305..4115646 | 71..412 | 100 | <- | Minus |
3L | 4122156..4122209 | 17..70 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:36 Download gff for
BO08278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4114973..4115142 | 413..582 | 98 | <- | Minus |
arm_3L | 4115305..4115646 | 71..412 | 100 | <- | Minus |
arm_3L | 4122156..4122209 | 17..70 | 100 | | Minus |
BO08278.pep Sequence
Translation from 16 to 598
> BO08278.pep
MASNRAAKSGFAAEAQRKINSKYSEELAQESLEWIKAVTEEPINTSGDTD
NFFEVLKDGVILCKLANALQPGSIKKINESKMAFKCMENISAFLACAKNF
GVPTQETFQSVDLWERQNLNSVVICLQSLGRKASNFNKPSIGPKEADKNV
RNFSDEQLRAGANVISLQYGSNKGATQSGINFGNTRHMASFLDH
BO08278.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Chd64-PB | 188 | CG14996-PB | 1..188 | 1..188 | 961 | 100 | Plus |
Chd64-PC | 175 | CG14996-PC | 3..175 | 16..188 | 885 | 99.4 | Plus |
CG5023-PA | 169 | CG5023-PA | 5..169 | 24..188 | 379 | 47.9 | Plus |
Mp20-PA | 184 | CG4696-PA | 10..178 | 18..186 | 362 | 44.2 | Plus |
Mp20-PC | 189 | CG4696-PC | 10..178 | 18..186 | 362 | 44.2 | Plus |