Clone BO08278 Report

Search the DGRC for BO08278

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:82
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptChd64-RB
Protein status:BO08278.pep: validated full length
Sequenced Size:598

Clone Sequence Records

BO08278.5prime Sequence

596 bp (595 high quality bases) assembled on 2006-01-06

> BO08278.5prime
GAAGTTATCAGTCGACATGGCGTCCAACCGTGCAGCGAAGTCTGGTTTTG
CCGCCGAGGCCCAGCGCAAAATTAACTCCAAGTACAGCGAGGAGCTGGCC
CAGGAGAGCCTCGAGTGGATCAAGGCCGTCACCGAGGAGCCCATCAACAC
ATCCGGCGACACCGACAACTTCTTCGAGGTGCTCAAGGATGGCGTCATCC
TGTGCAAGCTGGCCAACGCCCTGCAGCCCGGCTCCATCAAGAAGATCAAC
GAGAGCAAAATGGCCTTCAAGTGCATGGAGAACATCTCGGCCTTCCTCGC
GTGCGCCAAGAACTTCGGTGTCCCCACCCAGGAGACCTTCCAGAGCGTCG
ACCTGTGGGAGCGCCAGAATCTGAACTCGGTGGTTATCTGCCTGCAGTCG
CTGGGTCGCAAGGCCTCCAACTTCAACAAGCCATCGATTGGCCCCAAGGA
GGCCGACAAGAATGTGAGGAACTTCAGCGACGAGCAGCTGCGCGCCGGCG
CCAACGTCATCTCCCTGCAGTACGGATCGAACAAGGGCGCCACCCAGTCG
GGCATCAACTTCGGCAACACCCGGCACATGGCAAGCTTTCTAGACC

BO08278.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG14996-PB 567 Chd64-RB 1..564 17..580 2820 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:10:48
Subject Length Description Subject Range Query Range Score Percent Strand
Chd64-RB 1429 CG14996-RB 180..743 17..580 2820 100 Plus
Chd64-RC 1226 CG14996-RC 27..540 67..580 2555 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:10:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4115304..4115646 413..71 1715 100 Minus
3L 28110227 3L 4114975..4115144 580..411 850 100 Minus
3L 28110227 3L 4122156..4122209 70..17 270 100 Minus
Blast to na_te.dros performed on 2015-02-11 22:10:47 has no hits.

BO08278.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:52 Download gff for BO08278.5prime
Subject Subject Range Query Range Percent Splice Strand
Chd64-PB 1..567 17..581 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:35:32 Download gff for BO08278.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14996-PB 1..567 17..581 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:48:09 Download gff for BO08278.5prime
Subject Subject Range Query Range Percent Splice Strand
Chd64-RB 180..743 17..580 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:51:38 Download gff for BO08278.5prime
Subject Subject Range Query Range Percent Splice Strand
Chd64-RB 180..743 17..580 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:51:38 Download gff for BO08278.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4114975..4115142 413..580 100 <- Minus
3L 4115305..4115646 71..412 100 <- Minus
3L 4122156..4122209 17..70 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:48:09 Download gff for BO08278.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4114975..4115142 413..580 100 <- Minus
arm_3L 4115305..4115646 71..412 100 <- Minus
arm_3L 4122156..4122209 17..70 100   Minus

BO08278.3prime Sequence

596 bp (595 high quality bases) assembled on 2006-01-06

> BO08278.3prime
ATGGTCTAGAAAGCTTGCCATGTGCCGGGTGTTGCCGAAGTTGATGCCCG
ACTGGGTGGCGCCCTTGTTCGATCCGTACTGCAGGGAGATGACGTTGGCG
CCGGCGCGCAGCTGCTCGTCGCTGAAGTTCCTCACATTCTTGTCGGCCTC
CTTGGGGCCAATCGATGGCTTGTTGAAGTTGGAGGCCTTGCGACCCAGCG
ACTGCAGGCAGATAACCACCGAGTTCAGATTCTGGCGCTCCCACAGGTCG
ACGCTCTGGAAGGTCTCCTGGGTGGGGACACCGAAGTTCTTGGCGCACGC
GAGGAAGGCCGAGATGTTCTCCATGCACTTGAAGGCCATTTTGCTCTCGT
TGATCTTCTTGATGGAGCCGGGCTGCAGGGCGTTGGCCAGCTTGCACAGG
ATGACGCCATCCTTGAGCACCTCGAAGAAGTTGTCGGTGTCGCCGGATGT
GTTGATGGGCTCCTCGGTGACGGCCTTGATCCACTCGAGGCTCTCCTGGG
CCAGCTCCTCGCTGTACTTGGAGTTAATTTTGCGCTGGGCCTCGGCGGCA
AAACCAGACTTCGCTGCACGGTTGGACGCCATGTCGACTGATAACT

BO08278.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG14996-PB 567 Chd64-RB 1..564 582..19 2820 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:55:49
Subject Length Description Subject Range Query Range Score Percent Strand
Chd64-RB 1429 CG14996-RB 180..743 582..19 2820 100 Minus
Chd64-RC 1226 CG14996-RC 27..540 532..19 2555 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:55:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4115304..4115646 186..528 1715 100 Plus
3L 28110227 3L 4114975..4115144 19..188 850 100 Plus
3L 28110227 3L 4122156..4122209 529..582 270 100 Plus
Blast to na_te.dros performed on 2015-02-12 15:55:48 has no hits.

BO08278.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:51 Download gff for BO08278.3prime
Subject Subject Range Query Range Percent Splice Strand
Chd64-PB 1..567 18..582 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:35:31 Download gff for BO08278.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14996-PB 1..567 18..582 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:10:30 Download gff for BO08278.3prime
Subject Subject Range Query Range Percent Splice Strand
Chd64-RB 180..743 19..582 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:27:08 Download gff for BO08278.3prime
Subject Subject Range Query Range Percent Splice Strand
Chd64-RB 180..743 19..582 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:27:08 Download gff for BO08278.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4114975..4115142 19..186 100 <- Plus
3L 4115305..4115646 187..528 100 <- Plus
3L 4122156..4122209 529..582 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:10:30 Download gff for BO08278.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4115305..4115646 187..528 100 <- Plus
arm_3L 4122156..4122209 529..582 100   Plus
arm_3L 4114975..4115142 19..186 100 <- Plus

BO08278.complete Sequence

598 bp (598 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ631132

> BO08278.complete
GAAGTTATCAGTCGACATGGCGTCCAACCGTGCAGCGAAGTCTGGTTTTG
CCGCCGAGGCCCAGCGCAAAATTAACTCCAAGTACAGCGAGGAGCTGGCC
CAGGAGAGCCTCGAGTGGATCAAGGCCGTCACCGAGGAGCCCATCAACAC
ATCCGGCGACACCGACAACTTCTTCGAGGTGCTCAAGGATGGCGTCATCC
TGTGCAAGCTGGCCAACGCCCTGCAGCCCGGCTCCATCAAGAAGATCAAC
GAGAGCAAAATGGCCTTCAAGTGCATGGAGAACATCTCGGCCTTCCTCGC
GTGCGCCAAGAACTTCGGTGTCCCCACCCAGGAGACCTTCCAGAGCGTCG
ACCTGTGGGAGCGCCAGAATCTGAACTCGGTGGTTATCTGCCTGCAGTCG
CTGGGTCGCAAGGCCTCCAACTTCAACAAGCCATCGATTGGCCCCAAGGA
GGCCGACAAGAATGTGAGGAACTTCAGCGACGAGCAGCTGCGCGCCGGCG
CCAACGTCATCTCCCTGCAGTACGGATCGAACAAGGGCGCCACCCAGTCG
GGCATCAACTTCGGCAACACCCGGCACATGGCAAGCTTTCTAGACCAT

BO08278.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:48:55
Subject Length Description Subject Range Query Range Score Percent Strand
Chd64-RB 567 CG14996-PB 1..564 17..580 2820 100 Plus
Chd64-RC 528 CG14996-PC 12..525 67..580 2555 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:48:56
Subject Length Description Subject Range Query Range Score Percent Strand
Chd64-RB 1429 CG14996-RB 180..743 17..580 2820 100 Plus
Chd64-RC 1226 CG14996-RC 27..540 67..580 2555 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:48:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4115304..4115646 413..71 1715 100 Minus
3L 28110227 3L 4114975..4115144 580..411 850 100 Minus
3L 28110227 3L 4122156..4122209 70..17 270 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:48:54 has no hits.

BO08278.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:32 Download gff for BO08278.complete
Subject Subject Range Query Range Percent Splice Strand
Chd64-RB 1..567 17..581 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:06:55 Download gff for BO08278.complete
Subject Subject Range Query Range Percent Splice Strand
Chd64-RB 215..778 17..580 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:36 Download gff for BO08278.complete
Subject Subject Range Query Range Percent Splice Strand
Chd64-RB 180..743 17..582 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:32 Download gff for BO08278.complete
Subject Subject Range Query Range Percent Splice Strand
Chd64-RB 215..778 17..580 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:36 Download gff for BO08278.complete
Subject Subject Range Query Range Percent Splice Strand
Chd64-RB 180..743 17..582 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:36 Download gff for BO08278.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4114973..4115142 413..582 98 <- Minus
3L 4115305..4115646 71..412 100 <- Minus
3L 4122156..4122209 17..70 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:36 Download gff for BO08278.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4114973..4115142 413..582 98 <- Minus
arm_3L 4115305..4115646 71..412 100 <- Minus
arm_3L 4122156..4122209 17..70 100   Minus

BO08278.pep Sequence

Translation from 16 to 598

> BO08278.pep
MASNRAAKSGFAAEAQRKINSKYSEELAQESLEWIKAVTEEPINTSGDTD
NFFEVLKDGVILCKLANALQPGSIKKINESKMAFKCMENISAFLACAKNF
GVPTQETFQSVDLWERQNLNSVVICLQSLGRKASNFNKPSIGPKEADKNV
RNFSDEQLRAGANVISLQYGSNKGATQSGINFGNTRHMASFLDH

BO08278.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:47
Subject Length Description Subject Range Query Range Score Percent Strand
Chd64-PB 188 CG14996-PB 1..188 1..188 961 100 Plus
Chd64-PC 175 CG14996-PC 3..175 16..188 885 99.4 Plus
CG5023-PA 169 CG5023-PA 5..169 24..188 379 47.9 Plus
Mp20-PA 184 CG4696-PA 10..178 18..186 362 44.2 Plus
Mp20-PC 189 CG4696-PC 10..178 18..186 362 44.2 Plus