Clone Sequence Records
BO08279.3prime Sequence
932 bp (853 high quality bases) assembled on 2006-01-06
> BO08279.3prime
ATGGTCTAGAAAGCTTGCGACGGTGAACTTTTGCAGCAGATGGCGCAACT
CTTCGTTTTGGCGACGCAGAAAGACGACTTCCGCATCGTACTGCACACGC
ATCTTGAGCACCTCAACGTAGTGATTCAGTCCGTGCTCCAGTGTCTTCCA
CAGCTTGCACTTGGAGGCCGGGAAGCAGGCCGAGAACTGGCGCCAGAAAT
TACGGATCTCCGCATCTGTAATCTGAATGAGATTTACCGCATTGAGAATG
CTACCCGGTTCGTGTTCGTACATCTTTTTGTGCATCTTGGAGGTGAACAG
ATTCATGGCGTGCAGGCAGAGGGCCGGTTCCATGACCAGATAGTGATTGT
GACATCTCTTGGCCGCCACCTCGCTCTTGGGTAGAAATGTATCCCCTGTC
GACCTATGCTCCTTTTCATCCGGTTGGCCACCCGCCGCGCCCTGCAGCCG
ATTTGGCTTTTGATCCTTCATGAACACCTCGGCACACTTGCGTGGACTCA
ATCCCTGCGGCTGGCAATTCGGACAGTAGGTGTACGGCATGAAAACCTTG
GTCAGTTCCTTGACATCCCGCAGATGACGAATTCGCAGCGCCGCAAATAT
ATTGTCGATGCGTACCAGGCATTTTTCCTCCTCGGAATACGGTTCAAGAA
TCTTTAGCAGACGCTCCTCGATGAGGAAACCGCCGCGATCGGACAGCTTG
CGAATAAGATTACGCATCAAGCGTAGTGAATCCGGCGGAAGCTCCTTGAT
ATCCGGCTTGCAATTTACGCCCGAGTTGGGCATCACCCTGTTCTTGGGAA
CCCGGCCAATTCGCATGTCAAACTTCTCCAGAATGTTATTGCGCTTTTTC
TTCGCCTTTGTGATGTTTGGAATGGGTGGCACGGGGCTGGACCACGGCAT
GGGCAACTGCTGCTCGTGTATGATGCGATCGA
BO08279.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10958-PA | 2232 | CG10958-RA | 1316..2229 | 932..19 | 4495 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:42:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10958-RA | 2683 | CG10958-RA | 1543..2456 | 932..19 | 4525 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:42:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8133827..8134740 | 932..19 | 4525 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:42:11 has no hits.
BO08279.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:54 Download gff for
BO08279.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10958-PA | 1317..2232 | 18..931 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:35:34 Download gff for
BO08279.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10958-PA | 1317..2232 | 18..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:06:46 Download gff for
BO08279.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10958-RA | 1544..2456 | 19..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:59:10 Download gff for
BO08279.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10958-RA | 1544..2456 | 19..931 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:59:10 Download gff for
BO08279.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8133828..8134740 | 19..931 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:06:46 Download gff for
BO08279.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8027861..8028773 | 19..931 | 99 | | Minus |
BO08279.5prime Sequence
858 bp (829 high quality bases) assembled on 2006-01-06
> BO08279.5prime
GAAGTTATCAGTCGACATGGACGACAACGAGGATGAGCTGGAGGAGCACC
AGGAGCTGGTCAGCGACGGCAGTGTCGAGGAGGAGGAGGAGGTGGAGCCC
GATCTGGGACCAGTGGACAGTTGGGAGTCCTTTAATGACCGCATCGATGG
CCTGATCTTTAACGAGCGATGCGACAAGTCGGTGAAGAAGTTGGACGAAC
GCCGGCTGGCGATACTCAACCGGGTGCGTCAGCAGTTCCGCGAGGCCCCG
AAAGGCGTCGCCGAACGTTGCCAGGCCCAGAAGTCGCCGATTGATCAACG
GCTGGAGTTGTCCAGTGAGCGATTGAACGAACTGGTGCGCTTTGGCAAAG
AACTAGTGACCAATGTCCGGGTGGCCAACGAGCGAAGGGAGCTGAATCGC
CGACTCTTCGAGGGTGCGCAGAAGAATCAGATGCATGTGAAGCTGCAACG
CGAAAGCGTTGAGACAATGGCCCGTTTCGAGAACATTAAGGCGCGCTGGA
CGGAGCTGGAGGAGACCAATGAGCCGATGCTGTTGTGGGACCAAATCGAA
GAGCAAAAGAAACGCATTGCCGAGATTATGGCACGCAAGGATGAGATGAT
ATCTGCCTGCCAAGCGGAGGTGGACCGCATGAATGCCAAGTACGAGTTCG
ATCGCGAGCGGCAGGCCCAGGATCTTTGTTGTCTGGTGGAGCGCGTTGAT
CACCAGGTGGAGACGCTTAAGGAGGCCTACAAGGAGCACATCCAAATGCT
GCGGCAAACCATCGAGGAGGAGCGTCAAATCTTCGCCGATAATGCGGTGG
AGAAGTGGCGCACCTTCTTCGATGCGATGAATGGCCACTTTGACGAGAAG
GGCCATTT
BO08279.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10958-PA | 2232 | CG10958-RA | 1..835 | 17..851 | 4125 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:07:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10958-RA | 2683 | CG10958-RA | 228..1069 | 17..858 | 4150 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:07:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8132512..8133353 | 17..858 | 4150 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:07:36 has no hits.
BO08279.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:55 Download gff for
BO08279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10958-PA | 1..841 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:35:35 Download gff for
BO08279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10958-PA | 1..841 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:11:29 Download gff for
BO08279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10958-RA | 228..1068 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:26:57 Download gff for
BO08279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10958-RA | 228..1068 | 17..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:26:57 Download gff for
BO08279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8132512..8133352 | 17..858 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:11:29 Download gff for
BO08279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8026545..8027385 | 17..858 | 99 | | Plus |
BO08279.complete Sequence
2263 bp assembled on 2007-10-05
GenBank Submission: FJ631133
> BO08279.complete
GAAGTTATCAGTCGACATGGACGACAACGAGGATGAGCTGGAGGAGCACC
AGGAGCTGGTCAGCGACGGCAGTGTCGAGGAGGAGGAGGAGGTGGAGCCC
GATCTGGGACCAGTGGACAGTTGGGAGTCCTTTAATGACCGCATCGATGG
CCTGATCTTTAACGAGCGATGCGACAAGTCGGTGAAGAAGTTGGACGAAC
GCCGGCTGGCGATACTCAACCGGGTGCGTCAGCAGTTCCGCGAGGCCCCG
AAAGGCGTCGCCGAACGTTGCCAGGCCCAGAAGTCGCCGATTGATCAACG
GCTGGAGTTGTCCAGTGAGCGATTGAACGAACTGGTGCGCTTTGGCAAAG
AACTAGTGACCAATGTCCGGGTGGCCAACGAGCGAAGGGAGCTGAATCGC
CGACTCTTCGAGGGTGCGCAGAAGAATCAGATGCATGTGAAGCTGCAACG
CGAAAGCGTTGAGACAATGGCCCGTTTCGAGAACATTAAGGCGCGCTGGA
CGGAGCTGGAGGAGACCAATGAGCCGATGCTGTTGTGGGACCAAATCGAA
GAGCAAAAGAAACGCATTGCCGAGATTATGGCACGCAAGGATGAGATGAT
ATCTGCCTGCCAAGCGGAGGTGGACCGCATGAATGCCAAGTACGAGTTCG
ATCGCGAGCGGCAGGCCCAGGATCTTTGTTGTCTGGTGGAGCGCGTTGAT
CACCAGGTGGAGACGCTTAAGGAGGCCTACAAGGAGCACATCCAAATGCT
GCGGCAAACCATCGAGGAGGAGCGTCAAATCTTCGCCGATAATGCGGTGG
AGAAGTGGCGCACCTTCTTCGATGCGATGAATGCCAACTTTGACGAGAAG
GCCAATTTGGTAAGGGCACGCGAGCAATTCTATGCTCGCCAAACCCAGCA
GATCAACGAGTCCCAGGAGGAGCTGACCAAGAGCACTCGCATTCGGCTGG
AGAAGGAGTGCGAGAGGCTCGAGCTGGAGCTACGTCGCACGCGCGACAAT
GTGCTGATGAACTCCGAGAAGCTGGACTACAACTATCAGGTTCTCCAGAA
GCGCAACGAGGAGAACGTGATCATTAACAACCAGCAGAAGCGACGGGTGG
CCCGACTGCATGAGGCGATCGGACGCACCCGGCGTGGCCTGAAGAATCTT
TACAACACGGGCAAGCGGAACATAGCCCGTCTTTCCTCGGACATCTACAA
GCTGCACTCCAACATCAACGATATGGAGTCGAAGGCGCATCAGGCGAGGC
TGAACAATCGCGAAAAGTTCGATCGCATCTGGGAGATCAACTACAAGGAA
CTGAACCTGCTGGTGGATCGGGTCTACCACATCGATCGCATCATACACGA
GCAGCAGTTGGCCATGCCGTGGTCCAGCCCCGTGCCACCCATTCCAAACA
TCAACAAGGCGAAGAAAAAGCGCAATAACATTCTGGAGAAGTTTGACATG
CGAATTGGCCGGGTTCCCAAGAACAGGGTGATGCCCAACTCGGGCGTAAA
TTGCAAGCCGGATATCAAGGAGCTTCCGCCGGATTCACTACGCTTGATGC
GTAATCTTATTCGCAAGCTGTCCGATCGCGGCGGTTTCCTCATCGAGGAG
CGTCTGCTAAAGATTCTTGAACCGTATTCCGAGGAGGAAAAATGCCTGGT
ACGCATCGACAATATATTTGCGGCGCTGCGAATTCGTCATCTGCGGGATG
TCAAGGAACTGACCAAGGTTTTCATGCCGTACACCTACTGTCCGAATTGC
CAGCCGCAGGGATTGAGTCCACGCAAGTGTGCCGAGGTGTTCATGAAGGA
TCAAAAGCCAAATCGGCTGCAGGGCGCGGCGGGTGGCCAACCGGATGAAA
AGGAGCATAGGTCGACAGGGGATACATTTCTACCCAAGAGCGAGGTGGCG
GCCAAGAGATGTCACAATCACTATCTGGTCATGGAACCGGCCCTCTGCCT
GCACGCCATGAATCTGTTCACCTCCAAGATGCACAAAAAGATGTACGAAC
ACGAACCGGGTAGCATTCTCAATGCGGTAAATCTCATTCAGATTACAGAT
GCGGAGATCCGTAATTTCTGGCGCCAGTTCTCGGCCTGCTTCCCGGCCTC
CAAGTGCAAGCTGTGGAAGACACTGGAGCACGGACTGAATCACTACGTTG
AGGTGCTCAAGATGCGTGTGCAGTACGATGCGGAAGTCGTCTTTCTGCGT
CGCCAAAACGAAGAGTTGCGCCATCTGCTGCAAAAGTTCACCGTCGCAAG
CTTTCTAGACCAT
BO08279.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:56:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10958-RA | 2232 | CG10958-PA | 1..2229 | 17..2245 | 11145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:56:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10958-RA | 2683 | CG10958-RA | 228..2456 | 17..2245 | 11145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:56:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8132512..8134740 | 17..2245 | 11145 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:56:14 has no hits.
BO08279.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:17 Download gff for
BO08279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10958-RA | 1..2232 | 17..2246 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:18:33 Download gff for
BO08279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10958-RA | 107..2335 | 17..2245 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:07 Download gff for
BO08279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10958-RA | 228..2456 | 17..2247 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:17 Download gff for
BO08279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10958-RA | 107..2335 | 17..2245 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:30 Download gff for
BO08279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10958-RA | 228..2456 | 17..2247 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:30 Download gff for
BO08279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8132512..8134740 | 17..2247 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:07 Download gff for
BO08279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8026545..8028773 | 17..2247 | 99 | | Plus |
BO08279.pep Sequence
Translation from 16 to 2263
> BO08279.pep
MDDNEDELEEHQELVSDGSVEEEEEVEPDLGPVDSWESFNDRIDGLIFNE
RCDKSVKKLDERRLAILNRVRQQFREAPKGVAERCQAQKSPIDQRLELSS
ERLNELVRFGKELVTNVRVANERRELNRRLFEGAQKNQMHVKLQRESVET
MARFENIKARWTELEETNEPMLLWDQIEEQKKRIAEIMARKDEMISACQA
EVDRMNAKYEFDRERQAQDLCCLVERVDHQVETLKEAYKEHIQMLRQTIE
EERQIFADNAVEKWRTFFDAMNANFDEKANLVRAREQFYARQTQQINESQ
EELTKSTRIRLEKECERLELELRRTRDNVLMNSEKLDYNYQVLQKRNEEN
VIINNQQKRRVARLHEAIGRTRRGLKNLYNTGKRNIARLSSDIYKLHSNI
NDMESKAHQARLNNREKFDRIWEINYKELNLLVDRVYHIDRIIHEQQLAM
PWSSPVPPIPNINKAKKKRNNILEKFDMRIGRVPKNRVMPNSGVNCKPDI
KELPPDSLRLMRNLIRKLSDRGGFLIEERLLKILEPYSEEEKCLVRIDNI
FAALRIRHLRDVKELTKVFMPYTYCPNCQPQGLSPRKCAEVFMKDQKPNR
LQGAAGGQPDEKEHRSTGDTFLPKSEVAAKRCHNHYLVMEPALCLHAMNL
FTSKMHKKMYEHEPGSILNAVNLIQITDAEIRNFWRQFSACFPASKCKLW
KTLEHGLNHYVEVLKMRVQYDAEVVFLRRQNEELRHLLQKFTVASFLDH
BO08279.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:23:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10958-PA | 743 | CG10958-PA | 1..743 | 1..743 | 3871 | 100 | Plus |
