Clone BO08280 Report

Search the DGRC for BO08280

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:82
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptSPE-RA
Protein status:BO08280.pep: validated full length
Sequenced Size:1234

Clone Sequence Records

BO08280.3prime Sequence

936 bp (798 high quality bases) assembled on 2006-01-06

> BO08280.3prime
ATGGTCTAGAAAGCTTGCTGGCTCCAATTTCTGCTTTATCCAATCGATGA
AAGCCCCCGTGCGGGTATAGACGCCGGGCCATCCCTTGAGGCCGCAGGGC
TTCGTCCCGTAGGAGGTGACGCCGGCAATGTAGAAGACATCCCGGCCGCC
CGTGGATATAGGCACCATAAGGGGACCGCCGGAATCGCCACCGCATGTAT
CCACGCCCAACTGGCCGCCGGCACACATCTGAGAATCGTCCAGTTTCACC
TTGAAGCTGGAGTACTTTTCCTGACAACTCGTTAGGTTCCAAACGTTGAC
GGTGATCTTCAGCTTGATCGCACTTGGCTGCATGTTCTCGGTAAGTCCCC
AGCCGGCCACATCCATGCCGTAGTCCACAAAGTTGTTTTGGACTAAACCA
TCCGTGGGAAGGCATATTGGACGCACGTAGTCGGTGTAGCTAACAATCCT
CTTAAGGCGCACCAACGCAATGTCATTACGCTGATCAACGGAATTGGGAG
CATACATCTCGTGGATGATGCCCTTCTCGACCTCAATGTCGATGTGTTTC
GGTGCACAGATGCGCTGTCCGTTCATCTGGGTGGTGCAGTCAGGATCGGT
ACGAGTGTCCCACTCCCCCAGGCGAACGCTGTGTAGAACGGCACCGGATT
TGTCCAGTTCTCGGCTGGCCAGGCAGTGTCCAGCGGTCAGGACGTAGCGC
GAGTTGAGCAATGCACCGCCGCAGTTGAAAGTGTAGGTTTCAGAAAAAAG
TTTTTTGTACTGCAGCAATACCATCCATGGGAATTCCCAGAGGGTCGTAT
TGGTGCCCCCGAAAATGCGATCAGCGAAAAGGAAGCCGCAGACGTCATTT
CCAGGCAGCACATCCCCCTGCTGCAGTGCATCCCTCGTCGAAAGAGTTGG
TTCCGAGTCCATGATATTGCCCCGCATGCTCTGCGG

BO08280.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG16705-PA 1203 CG16705-RA 283..1200 936..19 4565 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:42:14
Subject Length Description Subject Range Query Range Score Percent Strand
SPE-RA 1267 CG16705-RA 314..1231 936..19 4575 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:42:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23687689..23688111 441..19 2115 100 Minus
3R 32079331 3R 23687321..23687630 749..440 1550 100 Minus
3R 32079331 3R 23686918..23687104 936..750 920 99.5 Minus
3R 32079331 3R 23688829..23689010 203..22 490 84.6 Minus
Blast to na_te.dros performed on 2015-02-13 05:42:14 has no hits.

BO08280.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:56 Download gff for BO08280.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16705-PA 283..1203 16..936 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:35:37 Download gff for BO08280.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16705-PA 283..1203 16..936 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:06:48 Download gff for BO08280.3prime
Subject Subject Range Query Range Percent Splice Strand
SPE-RA 314..1231 19..936 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:59:14 Download gff for BO08280.3prime
Subject Subject Range Query Range Percent Splice Strand
SPE-RA 314..1231 19..936 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:59:14 Download gff for BO08280.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23686918..23687104 750..936 99 -> Minus
3R 23687321..23687630 440..749 100 -> Minus
3R 23687691..23688111 19..439 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:06:48 Download gff for BO08280.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19512640..19512826 750..936 99 -> Minus
arm_3R 19513043..19513352 440..749 100 -> Minus
arm_3R 19513413..19513833 19..439 100   Minus

BO08280.5prime Sequence

899 bp (824 high quality bases) assembled on 2006-01-06

> BO08280.5prime
GAAGTTATCAGTCGACATGGCTTCTACGGAACGGAATTTTCTGCTACTGT
CACTGGTGGTCAGCGCATTATCCGGCTTGGTCCATCGATCAGACGCAGCG
GAGATCAGCTTTGGCAGTTGTACGCCCCAGCAGAGCGATGAGCGCGGCCA
GTGCGTTCACATCACCAGCTGCCCCTACCTGGCCAACCTGCTGATGGTGG
AGCCAAAGACTCCCGCCCAGCGAATCCTTCTCTCCAAGAGCCAGTGTGGC
CTGGACAACAGGGTTGAGGGCTTGGTGAATCGAATCCTGGTCTGCTGTCC
GCAGAGCATGCGGGGCAATATCATGGACTCGGAACCAACTCCTTCGACGA
GGGATGCACTGCAGCAGGGGGATGTGCTGCCTGGAAATGACGTCTGCGGC
TTCCTTTTCGCTGATCGCATTTTCGGGGGCACCAATACGACCCTCTGGGA
ATTCCCATGGATGGTATTGCTGCAGTACAAAAAACTTTTTTCTGAAACCT
ACACTTTCAACTGCGGCGGTGCATTGCTCAACTCGCGCTACGTCCTGACC
GCTGGACACTGCCTGGCCAGCCGAGAACTGGACAAATCCGGTGCCGTTCT
ACACAGCGTTCGCCTGGGGGAGTGGGACACTCGTACCGATCCTGACTGCA
CCACCCAGATGAACGGACAGCGCATCTGTGCACCGAAACACATCGACATT
GAGGTCGAGAAGGGCATCATCCACGAGATGTATGCTCCCAATTCCGTTGA
TCAGCGTAATGACATTGCGTTGGTGCGCCTTAAGAGGATTGTTAGCTACA
CCGACTACGTGCGTCCAATATGCCTTCCCACGGATGGTTTAGTCCAAAAC
AACTTTGTGGACTACGGCATGGATGTGGCCGGCTGGGGACTTACCGAGA

BO08280.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG16705-PA 1203 CG16705-RA 1..883 17..899 4415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:42:20
Subject Length Description Subject Range Query Range Score Percent Strand
SPE-RA 1267 CG16705-RA 28..914 13..899 4420 99.9 Plus
CG18754-RB 1687 CG18754-RB 1432..1511 13..92 385 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:42:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23686709..23687104 90..485 1980 100 Plus
3R 32079331 3R 23687321..23687630 486..795 1550 100 Plus
3R 32079331 3R 23687689..23687794 794..899 530 100 Plus
3R 32079331 3R 23686282..23686361 13..92 385 98.8 Plus
Blast to na_te.dros performed on 2015-02-13 05:42:19 has no hits.

BO08280.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:57 Download gff for BO08280.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16705-PA 1..882 17..898 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:35:38 Download gff for BO08280.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16705-PA 1..882 17..898 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:06:49 Download gff for BO08280.5prime
Subject Subject Range Query Range Percent Splice Strand
SPE-RA 22..913 6..898 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:59:24 Download gff for BO08280.5prime
Subject Subject Range Query Range Percent Splice Strand
SPE-RA 22..913 6..898 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:59:24 Download gff for BO08280.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23686276..23686361 6..92 95 -> Plus
3R 23686712..23687104 93..485 100 -> Plus
3R 23687321..23687630 486..795 100 -> Plus
3R 23687691..23687793 796..898 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:06:49 Download gff for BO08280.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19511998..19512083 6..92 95 -> Plus
arm_3R 19512434..19512826 93..485 100 -> Plus
arm_3R 19513043..19513352 486..795 100 -> Plus
arm_3R 19513413..19513515 796..898 100   Plus

BO08280.complete Sequence

1234 bp (1234 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ631134

> BO08280.complete
GAAGTTATCAGTCGACATGGCTTCTACGGAACGGAATTTTCTGCTACTGT
CACTGGTGGTCAGCGCATTATCCGGCTTGGTCCATCGATCAGACGCAGCG
GAGATCAGCTTTGGCAGTTGTACGCCCCAGCAGAGCGATGAGCGCGGCCA
GTGCGTTCACATCACCAGCTGCCCCTACCTGGCCAACCTGCTGATGGTGG
AGCCAAAGACTCCCGCCCAGCGAATCCTTCTCTCCAAGAGCCAGTGTGGC
CTGGACAACAGGGTTGAGGGCTTGGTGAATCGAATCCTGGTCTGCTGTCC
GCAGAGCATGCGGGGCAATATCATGGACTCGGAACCAACTCCTTCGACGA
GGGATGCACTGCAGCAGGGGGATGTGCTGCCTGGAAATGACGTCTGCGGC
TTCCTTTTCGCTGATCGCATTTTCGGGGGCACCAATACGACCCTCTGGGA
ATTCCCATGGATGGTATTGCTGCAGTACAAAAAACTTTTTTCTGAAACCT
ACACTTTCAACTGCGGCGGTGCATTGCTCAACTCGCGCTACGTCCTGACC
GCTGGACACTGCCTGGCCAGCCGAGAACTGGACAAATCCGGTGCCGTTCT
ACACAGCGTTCGCCTGGGGGAGTGGGACACTCGTACCGATCCTGACTGCA
CCACCCAGATGAACGGACAGCGCATCTGTGCACCGAAACACATCGACATT
GAGGTCGAGAAGGGCATCATCCACGAGATGTATGCTCCCAATTCCGTTGA
TCAGCGTAATGACATTGCGTTGGTGCGCCTTAAGAGGATTGTTAGCTACA
CCGACTACGTGCGTCCAATATGCCTTCCCACGGATGGTTTAGTCCAAAAC
AACTTTGTGGACTACGGCATGGATGTGGCCGGCTGGGGACTTACCGAGAA
CATGCAGCCAAGTGCGATCAAGCTGAAGATCACCGTCAACGTTTGGAACC
TAACGAGTTGTCAGGAAAAGTACTCCAGCTTCAAGGTGAAACTGGACGAT
TCTCAGATGTGTGCCGGCGGCCAGTTGGGCGTGGATACATGCGGTGGCGA
TTCCGGCGGTCCCCTTATGGTGCCTATATCCACGGGCGGCCGGGATGTCT
TCTACATTGCCGGCGTCACCTCCTACGGGACGAAGCCCTGCGGCCTCAAG
GGATGGCCCGGCGTCTATACCCGCACGGGGGCTTTCATCGATTGGATAAA
GCAGAAATTGGAGCCAGCAAGCTTTCTAGACCAT

BO08280.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:18:48
Subject Length Description Subject Range Query Range Score Percent Strand
SPE-RA 1203 CG16705-PA 1..1200 17..1216 6000 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:18:49
Subject Length Description Subject Range Query Range Score Percent Strand
SPE-RA 1267 CG16705-RA 28..1231 13..1216 6005 99.9 Plus
CG18754-RB 1687 CG18754-RB 1432..1511 13..92 385 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:18:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23687689..23688111 794..1216 2115 100 Plus
3R 32079331 3R 23686709..23687104 90..485 1980 100 Plus
3R 32079331 3R 23687321..23687630 486..795 1550 100 Plus
3R 32079331 3R 23688829..23689010 1032..1213 490 84.6 Plus
3R 32079331 3R 23686282..23686361 13..92 385 98.8 Plus
Blast to na_te.dros performed on 2014-11-27 07:18:47 has no hits.

BO08280.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:43 Download gff for BO08280.complete
Subject Subject Range Query Range Percent Splice Strand
SPE-RA 1..1203 17..1219 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:31:20 Download gff for BO08280.complete
Subject Subject Range Query Range Percent Splice Strand
SPE-RA 7..1216 6..1216 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:11:42 Download gff for BO08280.complete
Subject Subject Range Query Range Percent Splice Strand
SPE-RA 32..1231 17..1218 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:43 Download gff for BO08280.complete
Subject Subject Range Query Range Percent Splice Strand
SPE-RA 7..1216 6..1216 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:04 Download gff for BO08280.complete
Subject Subject Range Query Range Percent Splice Strand
SPE-RA 32..1231 17..1218 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:04 Download gff for BO08280.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23687321..23687630 486..795 100 -> Plus
3R 23687691..23688111 796..1218 99   Plus
3R 23686286..23686361 17..92 100 -> Plus
3R 23686712..23687104 93..485 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:11:42 Download gff for BO08280.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19512008..19512083 17..92 100 -> Plus
arm_3R 19512434..19512826 93..485 100 -> Plus
arm_3R 19513043..19513352 486..795 100 -> Plus
arm_3R 19513413..19513833 796..1218 99   Plus

BO08280.pep Sequence

Translation from 16 to 1234

> BO08280.pep
MASTERNFLLLSLVVSALSGLVHRSDAAEISFGSCTPQQSDERGQCVHIT
SCPYLANLLMVEPKTPAQRILLSKSQCGLDNRVEGLVNRILVCCPQSMRG
NIMDSEPTPSTRDALQQGDVLPGNDVCGFLFADRIFGGTNTTLWEFPWMV
LLQYKKLFSETYTFNCGGALLNSRYVLTAGHCLASRELDKSGAVLHSVRL
GEWDTRTDPDCTTQMNGQRICAPKHIDIEVEKGIIHEMYAPNSVDQRNDI
ALVRLKRIVSYTDYVRPICLPTDGLVQNNFVDYGMDVAGWGLTENMQPSA
IKLKITVNVWNLTSCQEKYSSFKVKLDDSQMCAGGQLGVDTCGGDSGGPL
MVPISTGGRDVFYIAGVTSYGTKPCGLKGWPGVYTRTGAFIDWIKQKLEP
ASFLDH

BO08280.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:20:13
Subject Length Description Subject Range Query Range Score Percent Strand
SPE-PA 400 CG16705-PA 1..400 1..400 2140 100 Plus
ea-PA 392 CG4920-PA 9..391 9..399 843 43.5 Plus
MP1-PA 390 CG1102-PA 19..388 25..398 770 43.5 Plus
MP1-PC 399 CG1102-PC 19..397 25..398 758 43.5 Plus
ea-PB 261 CG4920-PB 3..260 141..399 664 49.2 Plus