Clone Sequence Records
BO08280.3prime Sequence
936 bp (798 high quality bases) assembled on 2006-01-06
> BO08280.3prime
ATGGTCTAGAAAGCTTGCTGGCTCCAATTTCTGCTTTATCCAATCGATGA
AAGCCCCCGTGCGGGTATAGACGCCGGGCCATCCCTTGAGGCCGCAGGGC
TTCGTCCCGTAGGAGGTGACGCCGGCAATGTAGAAGACATCCCGGCCGCC
CGTGGATATAGGCACCATAAGGGGACCGCCGGAATCGCCACCGCATGTAT
CCACGCCCAACTGGCCGCCGGCACACATCTGAGAATCGTCCAGTTTCACC
TTGAAGCTGGAGTACTTTTCCTGACAACTCGTTAGGTTCCAAACGTTGAC
GGTGATCTTCAGCTTGATCGCACTTGGCTGCATGTTCTCGGTAAGTCCCC
AGCCGGCCACATCCATGCCGTAGTCCACAAAGTTGTTTTGGACTAAACCA
TCCGTGGGAAGGCATATTGGACGCACGTAGTCGGTGTAGCTAACAATCCT
CTTAAGGCGCACCAACGCAATGTCATTACGCTGATCAACGGAATTGGGAG
CATACATCTCGTGGATGATGCCCTTCTCGACCTCAATGTCGATGTGTTTC
GGTGCACAGATGCGCTGTCCGTTCATCTGGGTGGTGCAGTCAGGATCGGT
ACGAGTGTCCCACTCCCCCAGGCGAACGCTGTGTAGAACGGCACCGGATT
TGTCCAGTTCTCGGCTGGCCAGGCAGTGTCCAGCGGTCAGGACGTAGCGC
GAGTTGAGCAATGCACCGCCGCAGTTGAAAGTGTAGGTTTCAGAAAAAAG
TTTTTTGTACTGCAGCAATACCATCCATGGGAATTCCCAGAGGGTCGTAT
TGGTGCCCCCGAAAATGCGATCAGCGAAAAGGAAGCCGCAGACGTCATTT
CCAGGCAGCACATCCCCCTGCTGCAGTGCATCCCTCGTCGAAAGAGTTGG
TTCCGAGTCCATGATATTGCCCCGCATGCTCTGCGG
BO08280.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16705-PA | 1203 | CG16705-RA | 283..1200 | 936..19 | 4565 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:42:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SPE-RA | 1267 | CG16705-RA | 314..1231 | 936..19 | 4575 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:42:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23687689..23688111 | 441..19 | 2115 | 100 | Minus |
3R | 32079331 | 3R | 23687321..23687630 | 749..440 | 1550 | 100 | Minus |
3R | 32079331 | 3R | 23686918..23687104 | 936..750 | 920 | 99.5 | Minus |
3R | 32079331 | 3R | 23688829..23689010 | 203..22 | 490 | 84.6 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:42:14 has no hits.
BO08280.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:56 Download gff for
BO08280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16705-PA | 283..1203 | 16..936 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:35:37 Download gff for
BO08280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16705-PA | 283..1203 | 16..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:06:48 Download gff for
BO08280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SPE-RA | 314..1231 | 19..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:59:14 Download gff for
BO08280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SPE-RA | 314..1231 | 19..936 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:59:14 Download gff for
BO08280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23686918..23687104 | 750..936 | 99 | -> | Minus |
3R | 23687321..23687630 | 440..749 | 100 | -> | Minus |
3R | 23687691..23688111 | 19..439 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:06:48 Download gff for
BO08280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19512640..19512826 | 750..936 | 99 | -> | Minus |
arm_3R | 19513043..19513352 | 440..749 | 100 | -> | Minus |
arm_3R | 19513413..19513833 | 19..439 | 100 | | Minus |
BO08280.5prime Sequence
899 bp (824 high quality bases) assembled on 2006-01-06
> BO08280.5prime
GAAGTTATCAGTCGACATGGCTTCTACGGAACGGAATTTTCTGCTACTGT
CACTGGTGGTCAGCGCATTATCCGGCTTGGTCCATCGATCAGACGCAGCG
GAGATCAGCTTTGGCAGTTGTACGCCCCAGCAGAGCGATGAGCGCGGCCA
GTGCGTTCACATCACCAGCTGCCCCTACCTGGCCAACCTGCTGATGGTGG
AGCCAAAGACTCCCGCCCAGCGAATCCTTCTCTCCAAGAGCCAGTGTGGC
CTGGACAACAGGGTTGAGGGCTTGGTGAATCGAATCCTGGTCTGCTGTCC
GCAGAGCATGCGGGGCAATATCATGGACTCGGAACCAACTCCTTCGACGA
GGGATGCACTGCAGCAGGGGGATGTGCTGCCTGGAAATGACGTCTGCGGC
TTCCTTTTCGCTGATCGCATTTTCGGGGGCACCAATACGACCCTCTGGGA
ATTCCCATGGATGGTATTGCTGCAGTACAAAAAACTTTTTTCTGAAACCT
ACACTTTCAACTGCGGCGGTGCATTGCTCAACTCGCGCTACGTCCTGACC
GCTGGACACTGCCTGGCCAGCCGAGAACTGGACAAATCCGGTGCCGTTCT
ACACAGCGTTCGCCTGGGGGAGTGGGACACTCGTACCGATCCTGACTGCA
CCACCCAGATGAACGGACAGCGCATCTGTGCACCGAAACACATCGACATT
GAGGTCGAGAAGGGCATCATCCACGAGATGTATGCTCCCAATTCCGTTGA
TCAGCGTAATGACATTGCGTTGGTGCGCCTTAAGAGGATTGTTAGCTACA
CCGACTACGTGCGTCCAATATGCCTTCCCACGGATGGTTTAGTCCAAAAC
AACTTTGTGGACTACGGCATGGATGTGGCCGGCTGGGGACTTACCGAGA
BO08280.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16705-PA | 1203 | CG16705-RA | 1..883 | 17..899 | 4415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:42:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SPE-RA | 1267 | CG16705-RA | 28..914 | 13..899 | 4420 | 99.9 | Plus |
CG18754-RB | 1687 | CG18754-RB | 1432..1511 | 13..92 | 385 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:42:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23686709..23687104 | 90..485 | 1980 | 100 | Plus |
3R | 32079331 | 3R | 23687321..23687630 | 486..795 | 1550 | 100 | Plus |
3R | 32079331 | 3R | 23687689..23687794 | 794..899 | 530 | 100 | Plus |
3R | 32079331 | 3R | 23686282..23686361 | 13..92 | 385 | 98.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:42:19 has no hits.
BO08280.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:57 Download gff for
BO08280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16705-PA | 1..882 | 17..898 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:35:38 Download gff for
BO08280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16705-PA | 1..882 | 17..898 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:06:49 Download gff for
BO08280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SPE-RA | 22..913 | 6..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:59:24 Download gff for
BO08280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SPE-RA | 22..913 | 6..898 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:59:24 Download gff for
BO08280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23686276..23686361 | 6..92 | 95 | -> | Plus |
3R | 23686712..23687104 | 93..485 | 100 | -> | Plus |
3R | 23687321..23687630 | 486..795 | 100 | -> | Plus |
3R | 23687691..23687793 | 796..898 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:06:49 Download gff for
BO08280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19511998..19512083 | 6..92 | 95 | -> | Plus |
arm_3R | 19512434..19512826 | 93..485 | 100 | -> | Plus |
arm_3R | 19513043..19513352 | 486..795 | 100 | -> | Plus |
arm_3R | 19513413..19513515 | 796..898 | 100 | | Plus |
BO08280.complete Sequence
1234 bp (1234 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631134
> BO08280.complete
GAAGTTATCAGTCGACATGGCTTCTACGGAACGGAATTTTCTGCTACTGT
CACTGGTGGTCAGCGCATTATCCGGCTTGGTCCATCGATCAGACGCAGCG
GAGATCAGCTTTGGCAGTTGTACGCCCCAGCAGAGCGATGAGCGCGGCCA
GTGCGTTCACATCACCAGCTGCCCCTACCTGGCCAACCTGCTGATGGTGG
AGCCAAAGACTCCCGCCCAGCGAATCCTTCTCTCCAAGAGCCAGTGTGGC
CTGGACAACAGGGTTGAGGGCTTGGTGAATCGAATCCTGGTCTGCTGTCC
GCAGAGCATGCGGGGCAATATCATGGACTCGGAACCAACTCCTTCGACGA
GGGATGCACTGCAGCAGGGGGATGTGCTGCCTGGAAATGACGTCTGCGGC
TTCCTTTTCGCTGATCGCATTTTCGGGGGCACCAATACGACCCTCTGGGA
ATTCCCATGGATGGTATTGCTGCAGTACAAAAAACTTTTTTCTGAAACCT
ACACTTTCAACTGCGGCGGTGCATTGCTCAACTCGCGCTACGTCCTGACC
GCTGGACACTGCCTGGCCAGCCGAGAACTGGACAAATCCGGTGCCGTTCT
ACACAGCGTTCGCCTGGGGGAGTGGGACACTCGTACCGATCCTGACTGCA
CCACCCAGATGAACGGACAGCGCATCTGTGCACCGAAACACATCGACATT
GAGGTCGAGAAGGGCATCATCCACGAGATGTATGCTCCCAATTCCGTTGA
TCAGCGTAATGACATTGCGTTGGTGCGCCTTAAGAGGATTGTTAGCTACA
CCGACTACGTGCGTCCAATATGCCTTCCCACGGATGGTTTAGTCCAAAAC
AACTTTGTGGACTACGGCATGGATGTGGCCGGCTGGGGACTTACCGAGAA
CATGCAGCCAAGTGCGATCAAGCTGAAGATCACCGTCAACGTTTGGAACC
TAACGAGTTGTCAGGAAAAGTACTCCAGCTTCAAGGTGAAACTGGACGAT
TCTCAGATGTGTGCCGGCGGCCAGTTGGGCGTGGATACATGCGGTGGCGA
TTCCGGCGGTCCCCTTATGGTGCCTATATCCACGGGCGGCCGGGATGTCT
TCTACATTGCCGGCGTCACCTCCTACGGGACGAAGCCCTGCGGCCTCAAG
GGATGGCCCGGCGTCTATACCCGCACGGGGGCTTTCATCGATTGGATAAA
GCAGAAATTGGAGCCAGCAAGCTTTCTAGACCAT
BO08280.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:18:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SPE-RA | 1203 | CG16705-PA | 1..1200 | 17..1216 | 6000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:18:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SPE-RA | 1267 | CG16705-RA | 28..1231 | 13..1216 | 6005 | 99.9 | Plus |
CG18754-RB | 1687 | CG18754-RB | 1432..1511 | 13..92 | 385 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:18:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23687689..23688111 | 794..1216 | 2115 | 100 | Plus |
3R | 32079331 | 3R | 23686709..23687104 | 90..485 | 1980 | 100 | Plus |
3R | 32079331 | 3R | 23687321..23687630 | 486..795 | 1550 | 100 | Plus |
3R | 32079331 | 3R | 23688829..23689010 | 1032..1213 | 490 | 84.6 | Plus |
3R | 32079331 | 3R | 23686282..23686361 | 13..92 | 385 | 98.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:18:47 has no hits.
BO08280.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:43 Download gff for
BO08280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SPE-RA | 1..1203 | 17..1219 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:31:20 Download gff for
BO08280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SPE-RA | 7..1216 | 6..1216 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:11:42 Download gff for
BO08280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SPE-RA | 32..1231 | 17..1218 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:43 Download gff for
BO08280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SPE-RA | 7..1216 | 6..1216 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:04 Download gff for
BO08280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SPE-RA | 32..1231 | 17..1218 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:04 Download gff for
BO08280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23687321..23687630 | 486..795 | 100 | -> | Plus |
3R | 23687691..23688111 | 796..1218 | 99 | | Plus |
3R | 23686286..23686361 | 17..92 | 100 | -> | Plus |
3R | 23686712..23687104 | 93..485 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:11:42 Download gff for
BO08280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19512008..19512083 | 17..92 | 100 | -> | Plus |
arm_3R | 19512434..19512826 | 93..485 | 100 | -> | Plus |
arm_3R | 19513043..19513352 | 486..795 | 100 | -> | Plus |
arm_3R | 19513413..19513833 | 796..1218 | 99 | | Plus |
BO08280.pep Sequence
Translation from 16 to 1234
> BO08280.pep
MASTERNFLLLSLVVSALSGLVHRSDAAEISFGSCTPQQSDERGQCVHIT
SCPYLANLLMVEPKTPAQRILLSKSQCGLDNRVEGLVNRILVCCPQSMRG
NIMDSEPTPSTRDALQQGDVLPGNDVCGFLFADRIFGGTNTTLWEFPWMV
LLQYKKLFSETYTFNCGGALLNSRYVLTAGHCLASRELDKSGAVLHSVRL
GEWDTRTDPDCTTQMNGQRICAPKHIDIEVEKGIIHEMYAPNSVDQRNDI
ALVRLKRIVSYTDYVRPICLPTDGLVQNNFVDYGMDVAGWGLTENMQPSA
IKLKITVNVWNLTSCQEKYSSFKVKLDDSQMCAGGQLGVDTCGGDSGGPL
MVPISTGGRDVFYIAGVTSYGTKPCGLKGWPGVYTRTGAFIDWIKQKLEP
ASFLDH
BO08280.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:20:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SPE-PA | 400 | CG16705-PA | 1..400 | 1..400 | 2140 | 100 | Plus |
ea-PA | 392 | CG4920-PA | 9..391 | 9..399 | 843 | 43.5 | Plus |
MP1-PA | 390 | CG1102-PA | 19..388 | 25..398 | 770 | 43.5 | Plus |
MP1-PC | 399 | CG1102-PC | 19..397 | 25..398 | 758 | 43.5 | Plus |
ea-PB | 261 | CG4920-PB | 3..260 | 141..399 | 664 | 49.2 | Plus |