Clone BO08282 Report

Search the DGRC for BO08282

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:82
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptHk-RB
Protein status:BO08282.pep: validated full length
Sequenced Size:1210

Clone Sequence Records

BO08282.3prime Sequence

967 bp (870 high quality bases) assembled on 2006-01-06

> BO08282.3prime
ATGGTCTAGAAAGCTTGCCCGGAGCGCCAAGGTCGAGATCATCGGCGGCC
GCACCGGCTTGTTTTCCAATATCCTTTCCAGCTCCAGCATAACGCTCGAT
GAGAGTCGTGGCAGCAGCTGCAACGACTGCAGACTTTGGTGCAGCTGCTC
CGCCGATGTGGCGCCCAGCAGCAGGCATTGCACTGGCTCATGTTTCAGCG
ACCAGGCGATGGACAGCTGGGTGGGGCTGCAGCCCAGCTTCTCGGCGAGG
GCGGCAAGGTCGCGGAGACGGTCGCAGTGGCGGCGCCCCTCATCGATCCG
GTCCTTACCCCAACTGCCCTGCGGCGACAGAGCGGCATTACGATTGATCT
CGTCCTCGGTCCACGAGAAGCTCTTCGTCTTGAAGGAGCCCTTGGGCAGG
AAAAGCTTGTCCCCATTCTGGGTGTCGCTGAGGGCCATCGAGAGTGGACC
CCAGGCCATGAGGCCCACTCCGATCTTGTTGTACATCTCCGGCAGGTAGA
GTTCGCACTTTTCGCGACAGAACATATGGTACTCGGACTGCTCCACAATG
GGCGTGATGCAGTTGAACTGGCGGCAGTTGGTATAGGCCTCCATGATCTC
CACCTGGCTCCATCGAGCGGTGCCCCAATACATTGCCCAGCCCTGCTGTA
TCACGTAGCTCATGGCGCGCACCACCTCCATGGGACACATGGGATCCGCC
TTGTGGATGATGACGATATCGATGTACTGCAGCTGCAATCGCTGCAAACT
GGCACGAACACATTCGATGATGTGTTTCCGGGAGAGACCACGTTCCTCCG
ACTTGGTGCTCCAGTAGACCTTCGTGGTGATGACATAGGCGGTCCTCTTC
CAGCCCGCCCGCTGCAGTATCTTGCCGATCTCCGTCTCCGAGTGCGCCTC
CGAGATGTCGAACAGATTGATACCGCTCTCGATGGCCAGCTTAAGGAATG
CCCTCGCCCTGGTCATC

BO08282.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG32688-PA 1644 Hk-RA 713..1641 947..19 4645 100 Minus
CG32688-PB 1179 Hk-RB 248..1176 947..19 4645 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:06:57
Subject Length Description Subject Range Query Range Score Percent Strand
Hk-RM 3548 CG43388-RM 1400..2347 967..19 4675 99.6 Minus
Hk-RL 3548 CG43388-RL 1400..2347 967..19 4675 99.6 Minus
Hk-RK 8450 CG43388-RK 1403..2350 967..19 4675 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:06:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10240680..10241019 336..675 1700 100 Plus
X 23542271 X 10239679..10239897 118..336 1095 100 Plus
X 23542271 X 10241416..10241567 801..952 745 99.3 Plus
X 23542271 X 10241114..10241241 675..802 640 100 Plus
X 23542271 X 10239447..10239551 19..123 525 100 Plus
Blast to na_te.dros performed on 2015-02-11 18:06:53 has no hits.

BO08282.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:59 Download gff for BO08282.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32688-PA 694..1644 16..967 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:35:42 Download gff for BO08282.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32688-PB 229..1179 16..967 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:46:32 Download gff for BO08282.3prime
Subject Subject Range Query Range Percent Splice Strand
Hk-RK 1403..2356 15..967 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:36:07 Download gff for BO08282.3prime
Subject Subject Range Query Range Percent Splice Strand
Hk-RK 1403..2356 15..967 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:36:07 Download gff for BO08282.3prime
Subject Subject Range Query Range Percent Splice Strand
X 10241418..10241581 803..967 97   Plus
X 10239441..10239545 15..117 98 <- Plus
X 10239679..10239897 118..336 100 <- Plus
X 10240681..10241018 337..674 100 <- Plus
X 10241114..10241241 675..802 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:46:32 Download gff for BO08282.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10133474..10133578 15..117 98 <- Plus
arm_X 10133712..10133930 118..336 100 <- Plus
arm_X 10134714..10135051 337..674 100 <- Plus
arm_X 10135147..10135274 675..802 100 <- Plus
arm_X 10135451..10135614 803..967 97   Plus

BO08282.5prime Sequence

884 bp (741 high quality bases) assembled on 2006-01-06

> BO08282.5prime
GAAGTTATCAGTCGACATGTGCCGGGCTCCCATTGCGTCACTCGACTGTA
TGGAGGAGTTCAGTGGTACGGGCGGTCATCTTGATTTCGGTCGTTCGATC
AGTTTGGGCTCCAATCCGGCGCTACCATTGCGCCATGGATCCACACCAAC
GCCGGGACTGCGGTACAAGAATCTGGGCAAAAGCGGGTTGCGTATCTCGA
ATGTGGGATTGGGTACCTGGCCGGTATTTTCGCCGGGCGTGAGCGATGAC
CAGGCGGAGGCAATCCTTAAGCTGGCCATCGAGAGCGGTATCAATCTGTT
CGACATCTCGGAGGCGCACTCGGAGACGGAGATCGGCAAGATACTGCAGC
GGGCGGGCTGGAAGAGGACCGCCTATGTCATCACCACGAAGGTCTACTGG
AGCACCAAGTCGGAGGAACGTGGTCTCTCCCGGAAACACATCATCGAATG
TGTTCGTGCCAGTTTGCAGCGATTGCAGCTGCAGTACATCGATATCGTCA
TCATCCACAAGGCGGATCCCATGTGTCCCATGGAGGTGGTGCGCGCCATG
AGCTACGTGATACAGCAGGGCTGGGCAATGTATTGGGGCACCGCTCGATG
GAGCCAGGTGGAGATCATGGAGGCCTATACCAACTGCCGCCAGTTCAACT
GCATCACGCCCATTGTGGAGCAGTCCGAGTACCATATGTTCTGTCGCGAA
AAGTGCGAACTCTACCTGCCGGAGATGTACAACAAGATCGGAGTGGGCCT
CATGGCCTGGGGTCCACTCTCGATGGCCCTCAGCGACACCCAGAATGGGG
ACAAGCTTTTCCTGCCCAAGGGCTCCCTTCAGACGAAGAGCTTCTCGTGG
ACCGAGGACGAGATCAATCGTAATGCCGCTCTGT

BO08282.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG32688-PB 1179 Hk-RB 1..810 17..826 4050 100 Plus
CG32688-PA 1644 Hk-RA 539..1275 90..826 3685 100 Plus
CG32688-PB 1179 Hk-RB 815..868 831..884 270 100 Plus
CG32688-PA 1644 Hk-RA 1280..1333 831..884 270 100 Plus
CG32688-PA 1644 Hk-RA 495..540 19..64 230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:07:23
Subject Length Description Subject Range Query Range Score Percent Strand
Hk-RG 7021 CG43388-RG 1156..2024 16..884 4300 99.8 Plus
Hk-RF 3788 CG43388-RF 1411..2279 16..884 4300 99.8 Plus
Hk-RD 4046 CG43388-RD 1669..2537 16..884 4300 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:07:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10240680..10241019 875..536 1655 99.1 Minus
X 23542271 X 10241416..10241737 410..89 1610 100 Minus
X 23542271 X 10241114..10241241 536..409 640 100 Minus
X 23542271 X 10242808..10242884 91..15 370 98.7 Minus
Blast to na_te.dros performed on 2015-02-11 18:07:20 has no hits.

BO08282.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 03:43:00 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:35:43 Download gff for BO08282.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32688-PB 1..868 17..884 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:46:34 Download gff for BO08282.5prime
Subject Subject Range Query Range Percent Splice Strand
Hk-RF 1411..2279 16..884 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:37:16 Download gff for BO08282.5prime
Subject Subject Range Query Range Percent Splice Strand
Hk-RD 1669..2537 16..884 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:37:16 Download gff for BO08282.5prime
Subject Subject Range Query Range Percent Splice Strand
X 10240680..10241018 537..875 99 <- Minus
X 10241114..10241241 409..536 100 <- Minus
X 10241418..10241736 90..408 100 <- Minus
X 10242810..10242890 8..89 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:46:34 Download gff for BO08282.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10134713..10135051 537..875 99 <- Minus
arm_X 10135147..10135274 409..536 100 <- Minus
arm_X 10135451..10135769 90..408 100 <- Minus
arm_X 10136843..10136923 8..89 93   Minus

BO08282.complete Sequence

1210 bp (1210 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ631135

> BO08282.complete
GAAGTTATCAGTCGACATGTGCCGGGCTCCCATTGCGTCACTCGACTGTA
TGGAGGAGTTCAGTGGTACGGGCGGTCATCTTGATTTCGGTCGTTCGATC
AGTTTGGGCTCCAATCCGGCGCTACCATTGCGCCATGGATCCACACCAAC
GCCGGGACTGCGGTACAAGAATCTGGGCAAAAGCGGGTTGCGTATCTCGA
ATGTGGGATTGGGTACCTGGCCGGTATTTTCGCCGGGCGTGAGCGATGAC
CAGGCGGAGGCAATCCTTAAGCTGGCCATCGAGAGCGGTATCAATCTGTT
CGACATCTCGGAGGCGCACTCGGAGACGGAGATCGGCAAGATACTGCAGC
GGGCGGGCTGGAAGAGGACCGCCTATGTCATCACCACGAAGGTCTACTGG
AGCACCAAGTCGGAGGAACGTGGTCTCTCCCGGAAACACATCATCGAATG
TGTTCGTGCCAGTTTGCAGCGATTGCAGCTGCAGTACATCGATATCGTCA
TCATCCACAAGGCGGATCCCATGTGTCCCATGGAGGTGGTGCGCGCCATG
AGCTACGTGATACAGCAGGGCTGGGCAATGTATTGGGGCACCGCTCGATG
GAGCCAGGTGGAGATCATGGAGGCCTATACCAACTGCCGCCAGTTCAACT
GCATCACGCCCATTGTGGAGCAGTCCGAGTACCATATGTTCTGTCGCGAA
AAGTGCGAACTCTACCTGCCGGAGATGTACAACAAGATCGGAGTGGGCCT
CATGGCCTGGGGTCCACTCTCGATGGCCCTCAGCGACACCCAGAATGGGG
ACAAGCTTTTCCTGCCCAAGGGCTCCTTCAAGACGAAGAGCTTCTCGTGG
ACCGAGGACGAGATCAATCGTAATGCCGCTCTGTCGCCGCAGGGCAGTTG
GGGTAAGGACCGGATCGATGAGGGGCGCCGCCACTGCGACCGTCTCCGCG
ACCTTGCCGCCCTCGCCGAGAAGCTGGGCTGCAGCCCCACCCAGCTGTCC
ATCGCCTGGTCGCTGAAACATGAGCCAGTGCAATGCCTGCTGCTGGGCGC
CACATCGGCGGAGCAGCTGCACCAAAGTCTGCAGTCGTTGCAGCTGCTGC
CACGACTCTCATCGAGCGTTATGCTGGAGCTGGAAAGGATATTGGAAAAC
AAGCCGGTGCGGCCGCCGATGATCTCGACCTTGGCGCTCCGGGCAAGCTT
TCTAGACCAT

BO08282.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:45:33
Subject Length Description Subject Range Query Range Score Percent Strand
Hk-RF 2097 CG43388-PF 918..2094 16..1192 5885 100 Plus
Hk-RG 1179 CG43388-PG 1..1176 17..1192 5880 100 Plus
Hk-RD 1179 CG43388-PD 1..1176 17..1192 5880 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:45:35
Subject Length Description Subject Range Query Range Score Percent Strand
Hk-RG 7021 CG43388-RG 1156..2332 16..1192 5885 100 Plus
Hk-RF 3788 CG43388-RF 1411..2587 16..1192 5885 100 Plus
Hk-RD 4046 CG43388-RD 1669..2845 16..1192 5885 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:45:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10240680..10241019 875..536 1700 100 Minus
X 23542271 X 10241416..10241737 410..89 1610 100 Minus
X 23542271 X 10239679..10239897 1093..875 1095 100 Minus
X 23542271 X 10241114..10241241 536..409 640 100 Minus
X 23542271 X 10239447..10239551 1192..1088 525 100 Minus
X 23542271 X 10242808..10242884 91..15 370 98.7 Minus
Blast to na_te.dros performed on 2014-11-27 10:45:32 has no hits.

BO08282.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:44 Download gff for BO08282.complete
Subject Subject Range Query Range Percent Splice Strand
Hk-RB 1..1179 17..1195 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:31:22 Download gff for BO08282.complete
Subject Subject Range Query Range Percent Splice Strand
Hk-RB 300..1482 16..1196 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:41:46 Download gff for BO08282.complete
Subject Subject Range Query Range Percent Splice Strand
Hk-RF 1412..2587 17..1194 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:44 Download gff for BO08282.complete
Subject Subject Range Query Range Percent Splice Strand
Hk-RB 300..1482 16..1196 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:30:03 Download gff for BO08282.complete
Subject Subject Range Query Range Percent Splice Strand
Hk-RD 1670..2845 17..1194 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:30:03 Download gff for BO08282.complete
Subject Subject Range Query Range Percent Splice Strand
X 10241114..10241241 409..536 100 <- Minus
X 10239679..10239897 875..1093 100 <- Minus
X 10239443..10239545 1094..1194 98 <- Minus
X 10240681..10241018 537..874 100 <- Minus
X 10241418..10241736 90..408 100 <- Minus
X 10242810..10242882 17..89 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:41:46 Download gff for BO08282.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10136843..10136915 17..89 98   Minus
arm_X 10133476..10133578 1094..1194 98 <- Minus
arm_X 10133712..10133930 875..1093 100 <- Minus
arm_X 10134714..10135051 537..874 100 <- Minus
arm_X 10135147..10135274 409..536 100 <- Minus
arm_X 10135451..10135769 90..408 100 <- Minus

BO08282.pep Sequence

Translation from 16 to 1210

> BO08282.pep
MCRAPIASLDCMEEFSGTGGHLDFGRSISLGSNPALPLRHGSTPTPGLRY
KNLGKSGLRISNVGLGTWPVFSPGVSDDQAEAILKLAIESGINLFDISEA
HSETEIGKILQRAGWKRTAYVITTKVYWSTKSEERGLSRKHIIECVRASL
QRLQLQYIDIVIIHKADPMCPMEVVRAMSYVIQQGWAMYWGTARWSQVEI
MEAYTNCRQFNCITPIVEQSEYHMFCREKCELYLPEMYNKIGVGLMAWGP
LSMALSDTQNGDKLFLPKGSFKTKSFSWTEDEINRNAALSPQGSWGKDRI
DEGRRHCDRLRDLAALAEKLGCSPTQLSIAWSLKHEPVQCLLLGATSAEQ
LHQSLQSLQLLPRLSSSVMLELERILENKPVRPPMISTLALRASFLDH

BO08282.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:20:11
Subject Length Description Subject Range Query Range Score Percent Strand
Hk-PG 392 CG43388-PG 1..392 1..392 2063 100 Plus
Hk-PD 392 CG43388-PD 1..392 1..392 2063 100 Plus
Hk-PF 698 CG43388-PF 307..698 1..392 2063 100 Plus
Hk-PI 393 CG43388-PI 1..393 1..392 2051 99.7 Plus
Hk-PK 548 CG43388-PK 166..548 2..392 1992 98 Plus