Clone Sequence Records
BO08282.3prime Sequence
967 bp (870 high quality bases) assembled on 2006-01-06
> BO08282.3prime
ATGGTCTAGAAAGCTTGCCCGGAGCGCCAAGGTCGAGATCATCGGCGGCC
GCACCGGCTTGTTTTCCAATATCCTTTCCAGCTCCAGCATAACGCTCGAT
GAGAGTCGTGGCAGCAGCTGCAACGACTGCAGACTTTGGTGCAGCTGCTC
CGCCGATGTGGCGCCCAGCAGCAGGCATTGCACTGGCTCATGTTTCAGCG
ACCAGGCGATGGACAGCTGGGTGGGGCTGCAGCCCAGCTTCTCGGCGAGG
GCGGCAAGGTCGCGGAGACGGTCGCAGTGGCGGCGCCCCTCATCGATCCG
GTCCTTACCCCAACTGCCCTGCGGCGACAGAGCGGCATTACGATTGATCT
CGTCCTCGGTCCACGAGAAGCTCTTCGTCTTGAAGGAGCCCTTGGGCAGG
AAAAGCTTGTCCCCATTCTGGGTGTCGCTGAGGGCCATCGAGAGTGGACC
CCAGGCCATGAGGCCCACTCCGATCTTGTTGTACATCTCCGGCAGGTAGA
GTTCGCACTTTTCGCGACAGAACATATGGTACTCGGACTGCTCCACAATG
GGCGTGATGCAGTTGAACTGGCGGCAGTTGGTATAGGCCTCCATGATCTC
CACCTGGCTCCATCGAGCGGTGCCCCAATACATTGCCCAGCCCTGCTGTA
TCACGTAGCTCATGGCGCGCACCACCTCCATGGGACACATGGGATCCGCC
TTGTGGATGATGACGATATCGATGTACTGCAGCTGCAATCGCTGCAAACT
GGCACGAACACATTCGATGATGTGTTTCCGGGAGAGACCACGTTCCTCCG
ACTTGGTGCTCCAGTAGACCTTCGTGGTGATGACATAGGCGGTCCTCTTC
CAGCCCGCCCGCTGCAGTATCTTGCCGATCTCCGTCTCCGAGTGCGCCTC
CGAGATGTCGAACAGATTGATACCGCTCTCGATGGCCAGCTTAAGGAATG
CCCTCGCCCTGGTCATC
BO08282.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32688-PA | 1644 | Hk-RA | 713..1641 | 947..19 | 4645 | 100 | Minus |
CG32688-PB | 1179 | Hk-RB | 248..1176 | 947..19 | 4645 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:06:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hk-RM | 3548 | CG43388-RM | 1400..2347 | 967..19 | 4675 | 99.6 | Minus |
Hk-RL | 3548 | CG43388-RL | 1400..2347 | 967..19 | 4675 | 99.6 | Minus |
Hk-RK | 8450 | CG43388-RK | 1403..2350 | 967..19 | 4675 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:06:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10240680..10241019 | 336..675 | 1700 | 100 | Plus |
X | 23542271 | X | 10239679..10239897 | 118..336 | 1095 | 100 | Plus |
X | 23542271 | X | 10241416..10241567 | 801..952 | 745 | 99.3 | Plus |
X | 23542271 | X | 10241114..10241241 | 675..802 | 640 | 100 | Plus |
X | 23542271 | X | 10239447..10239551 | 19..123 | 525 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:06:53 has no hits.
BO08282.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:42:59 Download gff for
BO08282.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32688-PA | 694..1644 | 16..967 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:35:42 Download gff for
BO08282.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32688-PB | 229..1179 | 16..967 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:46:32 Download gff for
BO08282.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hk-RK | 1403..2356 | 15..967 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:36:07 Download gff for
BO08282.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hk-RK | 1403..2356 | 15..967 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:36:07 Download gff for
BO08282.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10241418..10241581 | 803..967 | 97 | | Plus |
X | 10239441..10239545 | 15..117 | 98 | <- | Plus |
X | 10239679..10239897 | 118..336 | 100 | <- | Plus |
X | 10240681..10241018 | 337..674 | 100 | <- | Plus |
X | 10241114..10241241 | 675..802 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:46:32 Download gff for
BO08282.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10133474..10133578 | 15..117 | 98 | <- | Plus |
arm_X | 10133712..10133930 | 118..336 | 100 | <- | Plus |
arm_X | 10134714..10135051 | 337..674 | 100 | <- | Plus |
arm_X | 10135147..10135274 | 675..802 | 100 | <- | Plus |
arm_X | 10135451..10135614 | 803..967 | 97 | | Plus |
BO08282.5prime Sequence
884 bp (741 high quality bases) assembled on 2006-01-06
> BO08282.5prime
GAAGTTATCAGTCGACATGTGCCGGGCTCCCATTGCGTCACTCGACTGTA
TGGAGGAGTTCAGTGGTACGGGCGGTCATCTTGATTTCGGTCGTTCGATC
AGTTTGGGCTCCAATCCGGCGCTACCATTGCGCCATGGATCCACACCAAC
GCCGGGACTGCGGTACAAGAATCTGGGCAAAAGCGGGTTGCGTATCTCGA
ATGTGGGATTGGGTACCTGGCCGGTATTTTCGCCGGGCGTGAGCGATGAC
CAGGCGGAGGCAATCCTTAAGCTGGCCATCGAGAGCGGTATCAATCTGTT
CGACATCTCGGAGGCGCACTCGGAGACGGAGATCGGCAAGATACTGCAGC
GGGCGGGCTGGAAGAGGACCGCCTATGTCATCACCACGAAGGTCTACTGG
AGCACCAAGTCGGAGGAACGTGGTCTCTCCCGGAAACACATCATCGAATG
TGTTCGTGCCAGTTTGCAGCGATTGCAGCTGCAGTACATCGATATCGTCA
TCATCCACAAGGCGGATCCCATGTGTCCCATGGAGGTGGTGCGCGCCATG
AGCTACGTGATACAGCAGGGCTGGGCAATGTATTGGGGCACCGCTCGATG
GAGCCAGGTGGAGATCATGGAGGCCTATACCAACTGCCGCCAGTTCAACT
GCATCACGCCCATTGTGGAGCAGTCCGAGTACCATATGTTCTGTCGCGAA
AAGTGCGAACTCTACCTGCCGGAGATGTACAACAAGATCGGAGTGGGCCT
CATGGCCTGGGGTCCACTCTCGATGGCCCTCAGCGACACCCAGAATGGGG
ACAAGCTTTTCCTGCCCAAGGGCTCCCTTCAGACGAAGAGCTTCTCGTGG
ACCGAGGACGAGATCAATCGTAATGCCGCTCTGT
BO08282.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32688-PB | 1179 | Hk-RB | 1..810 | 17..826 | 4050 | 100 | Plus |
CG32688-PA | 1644 | Hk-RA | 539..1275 | 90..826 | 3685 | 100 | Plus |
CG32688-PB | 1179 | Hk-RB | 815..868 | 831..884 | 270 | 100 | Plus |
CG32688-PA | 1644 | Hk-RA | 1280..1333 | 831..884 | 270 | 100 | Plus |
CG32688-PA | 1644 | Hk-RA | 495..540 | 19..64 | 230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:07:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hk-RG | 7021 | CG43388-RG | 1156..2024 | 16..884 | 4300 | 99.8 | Plus |
Hk-RF | 3788 | CG43388-RF | 1411..2279 | 16..884 | 4300 | 99.8 | Plus |
Hk-RD | 4046 | CG43388-RD | 1669..2537 | 16..884 | 4300 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:07:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10240680..10241019 | 875..536 | 1655 | 99.1 | Minus |
X | 23542271 | X | 10241416..10241737 | 410..89 | 1610 | 100 | Minus |
X | 23542271 | X | 10241114..10241241 | 536..409 | 640 | 100 | Minus |
X | 23542271 | X | 10242808..10242884 | 91..15 | 370 | 98.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:07:20 has no hits.
BO08282.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 03:43:00 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:35:43 Download gff for
BO08282.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32688-PB | 1..868 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:46:34 Download gff for
BO08282.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hk-RF | 1411..2279 | 16..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:37:16 Download gff for
BO08282.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hk-RD | 1669..2537 | 16..884 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:37:16 Download gff for
BO08282.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10240680..10241018 | 537..875 | 99 | <- | Minus |
X | 10241114..10241241 | 409..536 | 100 | <- | Minus |
X | 10241418..10241736 | 90..408 | 100 | <- | Minus |
X | 10242810..10242890 | 8..89 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:46:34 Download gff for
BO08282.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10134713..10135051 | 537..875 | 99 | <- | Minus |
arm_X | 10135147..10135274 | 409..536 | 100 | <- | Minus |
arm_X | 10135451..10135769 | 90..408 | 100 | <- | Minus |
arm_X | 10136843..10136923 | 8..89 | 93 | | Minus |
BO08282.complete Sequence
1210 bp (1210 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631135
> BO08282.complete
GAAGTTATCAGTCGACATGTGCCGGGCTCCCATTGCGTCACTCGACTGTA
TGGAGGAGTTCAGTGGTACGGGCGGTCATCTTGATTTCGGTCGTTCGATC
AGTTTGGGCTCCAATCCGGCGCTACCATTGCGCCATGGATCCACACCAAC
GCCGGGACTGCGGTACAAGAATCTGGGCAAAAGCGGGTTGCGTATCTCGA
ATGTGGGATTGGGTACCTGGCCGGTATTTTCGCCGGGCGTGAGCGATGAC
CAGGCGGAGGCAATCCTTAAGCTGGCCATCGAGAGCGGTATCAATCTGTT
CGACATCTCGGAGGCGCACTCGGAGACGGAGATCGGCAAGATACTGCAGC
GGGCGGGCTGGAAGAGGACCGCCTATGTCATCACCACGAAGGTCTACTGG
AGCACCAAGTCGGAGGAACGTGGTCTCTCCCGGAAACACATCATCGAATG
TGTTCGTGCCAGTTTGCAGCGATTGCAGCTGCAGTACATCGATATCGTCA
TCATCCACAAGGCGGATCCCATGTGTCCCATGGAGGTGGTGCGCGCCATG
AGCTACGTGATACAGCAGGGCTGGGCAATGTATTGGGGCACCGCTCGATG
GAGCCAGGTGGAGATCATGGAGGCCTATACCAACTGCCGCCAGTTCAACT
GCATCACGCCCATTGTGGAGCAGTCCGAGTACCATATGTTCTGTCGCGAA
AAGTGCGAACTCTACCTGCCGGAGATGTACAACAAGATCGGAGTGGGCCT
CATGGCCTGGGGTCCACTCTCGATGGCCCTCAGCGACACCCAGAATGGGG
ACAAGCTTTTCCTGCCCAAGGGCTCCTTCAAGACGAAGAGCTTCTCGTGG
ACCGAGGACGAGATCAATCGTAATGCCGCTCTGTCGCCGCAGGGCAGTTG
GGGTAAGGACCGGATCGATGAGGGGCGCCGCCACTGCGACCGTCTCCGCG
ACCTTGCCGCCCTCGCCGAGAAGCTGGGCTGCAGCCCCACCCAGCTGTCC
ATCGCCTGGTCGCTGAAACATGAGCCAGTGCAATGCCTGCTGCTGGGCGC
CACATCGGCGGAGCAGCTGCACCAAAGTCTGCAGTCGTTGCAGCTGCTGC
CACGACTCTCATCGAGCGTTATGCTGGAGCTGGAAAGGATATTGGAAAAC
AAGCCGGTGCGGCCGCCGATGATCTCGACCTTGGCGCTCCGGGCAAGCTT
TCTAGACCAT
BO08282.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:45:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hk-RF | 2097 | CG43388-PF | 918..2094 | 16..1192 | 5885 | 100 | Plus |
Hk-RG | 1179 | CG43388-PG | 1..1176 | 17..1192 | 5880 | 100 | Plus |
Hk-RD | 1179 | CG43388-PD | 1..1176 | 17..1192 | 5880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:45:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hk-RG | 7021 | CG43388-RG | 1156..2332 | 16..1192 | 5885 | 100 | Plus |
Hk-RF | 3788 | CG43388-RF | 1411..2587 | 16..1192 | 5885 | 100 | Plus |
Hk-RD | 4046 | CG43388-RD | 1669..2845 | 16..1192 | 5885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:45:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10240680..10241019 | 875..536 | 1700 | 100 | Minus |
X | 23542271 | X | 10241416..10241737 | 410..89 | 1610 | 100 | Minus |
X | 23542271 | X | 10239679..10239897 | 1093..875 | 1095 | 100 | Minus |
X | 23542271 | X | 10241114..10241241 | 536..409 | 640 | 100 | Minus |
X | 23542271 | X | 10239447..10239551 | 1192..1088 | 525 | 100 | Minus |
X | 23542271 | X | 10242808..10242884 | 91..15 | 370 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:45:32 has no hits.
BO08282.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:44 Download gff for
BO08282.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hk-RB | 1..1179 | 17..1195 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:31:22 Download gff for
BO08282.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hk-RB | 300..1482 | 16..1196 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:41:46 Download gff for
BO08282.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hk-RF | 1412..2587 | 17..1194 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:44 Download gff for
BO08282.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hk-RB | 300..1482 | 16..1196 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:30:03 Download gff for
BO08282.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hk-RD | 1670..2845 | 17..1194 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:30:03 Download gff for
BO08282.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10241114..10241241 | 409..536 | 100 | <- | Minus |
X | 10239679..10239897 | 875..1093 | 100 | <- | Minus |
X | 10239443..10239545 | 1094..1194 | 98 | <- | Minus |
X | 10240681..10241018 | 537..874 | 100 | <- | Minus |
X | 10241418..10241736 | 90..408 | 100 | <- | Minus |
X | 10242810..10242882 | 17..89 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:41:46 Download gff for
BO08282.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10136843..10136915 | 17..89 | 98 | | Minus |
arm_X | 10133476..10133578 | 1094..1194 | 98 | <- | Minus |
arm_X | 10133712..10133930 | 875..1093 | 100 | <- | Minus |
arm_X | 10134714..10135051 | 537..874 | 100 | <- | Minus |
arm_X | 10135147..10135274 | 409..536 | 100 | <- | Minus |
arm_X | 10135451..10135769 | 90..408 | 100 | <- | Minus |
BO08282.pep Sequence
Translation from 16 to 1210
> BO08282.pep
MCRAPIASLDCMEEFSGTGGHLDFGRSISLGSNPALPLRHGSTPTPGLRY
KNLGKSGLRISNVGLGTWPVFSPGVSDDQAEAILKLAIESGINLFDISEA
HSETEIGKILQRAGWKRTAYVITTKVYWSTKSEERGLSRKHIIECVRASL
QRLQLQYIDIVIIHKADPMCPMEVVRAMSYVIQQGWAMYWGTARWSQVEI
MEAYTNCRQFNCITPIVEQSEYHMFCREKCELYLPEMYNKIGVGLMAWGP
LSMALSDTQNGDKLFLPKGSFKTKSFSWTEDEINRNAALSPQGSWGKDRI
DEGRRHCDRLRDLAALAEKLGCSPTQLSIAWSLKHEPVQCLLLGATSAEQ
LHQSLQSLQLLPRLSSSVMLELERILENKPVRPPMISTLALRASFLDH
BO08282.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:20:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hk-PG | 392 | CG43388-PG | 1..392 | 1..392 | 2063 | 100 | Plus |
Hk-PD | 392 | CG43388-PD | 1..392 | 1..392 | 2063 | 100 | Plus |
Hk-PF | 698 | CG43388-PF | 307..698 | 1..392 | 2063 | 100 | Plus |
Hk-PI | 393 | CG43388-PI | 1..393 | 1..392 | 2051 | 99.7 | Plus |
Hk-PK | 548 | CG43388-PK | 166..548 | 2..392 | 1992 | 98 | Plus |