Clone Sequence Records
BO08283.3prime Sequence
989 bp (830 high quality bases) assembled on 2006-01-06
> BO08283.3prime
ATGGTCTAGAAAGCTTGCCATAAACTCGGAGGAGGGACGCAGATTCACCC
GCCGATTGCGCAGCGTGTACGTGCGAGGAGTTGCTTCATTCTCCTGATTG
GAATCCCTTCCCGGATTCTGTTCCAGGGATCCGCTTTCCGTGGAGGCTTC
CAGCGACATGTCCTCCTCGCAGTCCTCCAACTTGTCGGCGCCCACTGTCT
CGTCGTTGCTAATGTTTCCCTCCTCGTAGGTGAACTGGAATCGTCGTACG
CTCTTCTTGGCGCTGAAGAGCACGCCACGGTTCTGGCGTTTCGTGGTGCC
GGGCGTCTTGAGGATGGAGGTGCGCGGCTTAGGCGGCGGCGTCTTGGCAG
CGTTCTGCTCGGCGGCCGCAAGAATCGCTGATTTCAGGAGCGCATTTGGC
GCAATCGACTGACGGCCCTCGCCGGTGGACATGCGGAGTACTGTGCGGGC
GGGCGAAAAGGATCGGCGGTTGCGAACTACGATTACTCGCGGCGAACTGT
GGCGCGAGGACGTGGCGGGCAGGCCATCCTCCAGCGTTGGCTCCTCCACC
TTGGTCTTCTTCATGTTGGCATGGGCTTTGCGGAGGAACTGCTGCAGATT
GCTGCTCGGCTTGGCCTTCGATTTGATCTTCATGTTGCGACTTATCTTGG
GCTTGGGCTTCGGCTGTTTGGGTTCCTCGGCCACGGCATCCGGATCCAGC
CAGTCGTTGGCCTTCCAACGTTTCAGGTTATCGAAACGCTTGTCCACGTT
CTCGCTCTGCAGGCGCAGCATGTCCCACCAGCCCTCCAGATCCTCAGCCT
GCACCGGTTTCGAATCCTCACTGCCATCGTTTGGCTGACTGTTCTTGCCG
GTCGCTCCAGCCTCGCAACGATCGATCAGGCCGCTGAACTGCATCATCTT
TTTTGTGGTCAGCAGACGTGTTTGACCGATGGTCACGTTGATCATGTCAA
TGCCCGCCCGTTTCCTGCAGCCGTGCCTCATTCTTCCTT
BO08283.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17064-PA | 2766 | mars-RA | 1828..2763 | 954..19 | 4680 | 100 | Minus |
| CG17064-PA | 2766 | mars-RA | 1799..1829 | 984..954 | 155 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:38:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mars-RD | 4465 | CG17064-RD | 3345..4309 | 984..19 | 4805 | 99.9 | Minus |
| mars-RC | 3540 | CG17064-RC | 2420..3384 | 984..19 | 4805 | 99.9 | Minus |
| mars-RB | 3825 | CG17064-RB | 2705..3669 | 984..19 | 4805 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:38:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13504891..13505855 | 984..19 | 4780 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:38:14 has no hits.
BO08283.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:43:01 Download gff for
BO08283.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mars-PA | 1795..2766 | 18..989 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:35:45 Download gff for
BO08283.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17064-PA | 1795..2766 | 18..989 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:11:35 Download gff for
BO08283.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mars-RA | 1902..2876 | 10..989 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:18:00 Download gff for
BO08283.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mars-RB | 2701..3675 | 10..989 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:18:00 Download gff for
BO08283.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13504887..13505861 | 10..989 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:11:35 Download gff for
BO08283.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9392392..9393366 | 10..989 | 99 | | Minus |
BO08283.5prime Sequence
908 bp (771 high quality bases) assembled on 2006-01-06
> BO08283.5prime
GAAGTTATCAGTCGACATGCAGCGCCACAAGGAACTGTACAAGGAGCAAT
CGCTGGTGCTGAGTCCGCGCAATCACTGCCAGGAGAACAGGGATCGGTTG
CAGGCGGCGCGCGCCAAAAAACGAGAGGATTGTTTTTATCAGAACCGCAT
CATCAGCGTGAGCCCGACGCCCGTCAAAATAAAGCAATTGGCGGCGGCCC
AAGCTGCTCTGACCCAGGAAAATGTGGCACCCAAACTGGAGAGTCCGGAG
CGGCTGGACACGAAGCCCGCAGAACTGCTGAAGGAATCCAACCCGAAGGT
CTCCCGCCAGAAGCTCTACTTACAACGCTACATGGAGTGGAAGATAGCCA
AGACCAAGGAGCATAAGCAGCAAGACCAGAAACGTCGAGGCGCAGCCATC
AATGTGCCGACAGTAAAACAATCAAAGGCCTTGCCCAAATCACAAACATT
TCGGGTTCCCGATAATCTGGCTTCTGCAAAGCAGAAGGAGGCGGCTCCCA
TGTTCCAGCCTCCCAAGCGGTGTTCTCTCTACATGATTGCCAATCCGACG
GGCAAGGGAAAAGCCGCAGAACCGATTAAACCTTCAATACCCAAGCCAAC
GTCAGCAGCAGCTCCTCCGTCATCCAATACCGTGGCTGCATCTTCCGCCT
TGGCCAGGCATAAATCAGCTGCTTCTGCAACAAAAATAGTGCCTGCAATT
CGTCAGAACAACAATCCAGTGGCCTTGGCCAGGCAAAAAGCAGCTGCACG
ACCCATTCCCAACACAACGAAGCAAACTACCAGTGTAAGGCAGCCTGGGA
TTGAAGCGAANAAGATCACTACCACCATACCCAGACCCACCCCAGCGACA
GTCACGAAAGCGAAAACGCCAGGCATACGACAACAGCCACCAGTGGTCAG
CACAAGGC
BO08283.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17064-PA | 2766 | mars-RA | 1..889 | 17..905 | 4426 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:37:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mars-RD | 4465 | CG17064-RD | 1539..2435 | 9..905 | 4459 | 99.8 | Plus |
| mars-RC | 3540 | CG17064-RC | 614..1510 | 9..905 | 4459 | 99.8 | Plus |
| mars-RB | 3825 | CG17064-RB | 899..1795 | 9..905 | 4459 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:37:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13503028..13503924 | 9..905 | 4459 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:37:38 has no hits.
BO08283.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:43:02 Download gff for
BO08283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mars-PA | 1..892 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:35:47 Download gff for
BO08283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17064-PA | 1..892 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:34:10 Download gff for
BO08283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mars-RA | 100..999 | 9..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:55:23 Download gff for
BO08283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mars-RB | 899..1798 | 9..908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:55:23 Download gff for
BO08283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13503028..13503927 | 9..908 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:34:10 Download gff for
BO08283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9390533..9391432 | 9..908 | 99 | | Plus |
BO08283.complete Sequence
2797 bp (2797 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631136
> BO08283.complete
GAAGTTATCAGTCGACATGCAGCGCCACAAGGAACTGTACAAGGAGCAAT
CGCTGGTGCTGAGTCCGCGCAATCACTGCCAGGAGAACAGGGATCGGTTG
CAGGCGGCGCGCGCCAAAAAACGAGAGGATTGTTTTTATCAGAACCGCAT
CATCAGCGTGAGCCCGACGCCCGTCAAAATAAAGCAATTGGCGGCGGCCC
AAGCTGCTCTGACCCAGGAAAATGTGGCACCCAAACTGGAGAGTCCGGAG
CGGCTGGACACGAAGCCCGCAGAACTGCTGAAGGAATCCAACCCGAAGGT
CTCCCGCCAGAAGCTCTACTTACAACGCTACATGGAGTGGAAGATAGCCA
AGACCAAGGAGCATAAGCAGCAAGACCAGAAACGTCGAGGCGCAGCCATC
AATGTGCCGACAGTAAAACAATCAAAGGCCTTGCCCAAATCACAAACATT
TCGGGTTCCCGATAATCTGGCTTCTGCAAAGCAGAAGGAGGCGGCTCCCA
TGTTCCAGCCTCCCAAGCGGTGTTCTCTCTACATGATTGCCAATCCGACG
GGCAAGGGAAAAGCCGCAGAACCGATTAAACCTTCAATACCCAAGCCAAC
GTCAGCAGCAGCTCCTCCGTCATCCAATACCGTGGCTGCATCTTCCGCCT
TGGCCAGGCATAAATCAGCTGCTTCTGCAACAAAAATAGTGCCTGCAATT
CGTCAGAACAACAATCCAGTGGCCTTGGCCAGGCAAAAAGCAGCTGCACG
ACCCATTCCCAACACAACGAAGCAAACTACCAGTGTAAGGCAGCCTGGGA
TTGAAGCGAAAAAGATCACTACCACCATACCCAGACCCACCCCAGCGACA
GTCACGAAAGCGAAAACGCCAGGCATACGACAACAGCCACCAGTGGTCAG
CACAAAGCCAAGATTACCTGAGCCGCCAGCGCCACGGACAGCTAGACTGC
CCAATGTGTTGTCCAAGCCGTTCGAGAAACCTTTAGGAAACAAGGCACCA
GTGACACGACGGGCGAATGTCGTGAAACCACAGCCTATACGTGGCGGAGG
TGGTGCCGCGGCCAAGTTCAAGGACACAGCTGGAGCGACCAGCAAGGCAG
CAAGTCACTCCATACGAATGAAGGCCACCAAGATAAAGAGCCAGTACACG
AGGCTTCAGGACAACGTGCGAAAGCTTCCTCAGCTCAAAGCCGAGTTGCT
GCACGCAGCCACGCTAGATATACCGCCTCTCACGCCGCTAGACGATATCC
ATAATCCCTTTATCGACCAGGCCACATCAACGCAGTGCAAGTCGAACAAT
AGCAGCGGTCATCTTTTGGAGGCGTTTGGCGACACCATCTTGTTGAGCCC
GGTGGCACCGGTCAAAGCTGAAGGAGAAAGTTCGGTGAAAAGGCAGTTGC
TGCCGGAAGGTAAGAAAGAGGCGTCAGGTCCGGTGGCAAAGAAAAAGTTC
GACTTTACGCGTTACTCAGTGGCGAATTCGCCGGCGGAGGACTCGCTCAT
CTTGGATCCTCAGCAGACGACGGTTAAAGAAGACACTGGAGATTCCACTT
TGGTGCCAGAGGGTACAAAGACACCGCCACGTCGCGAATCCAATGGAATG
CCCAACTATCTCAGTCCGTTTGTTAGTGTCTCGCGGGGAAAGGTGAACTC
GCGCTGTGAGAAGGAGAAACGCAATAGCTTCTACCTGTCCAATGAGGAAT
CGCCCTTGGAAGTTCGCCGTGCCATTGAATCGGTTCTGTACTTCCGACTG
CAGCTGGAAAACGAGATCACGCGCCTCCAAGCGCTTTGCGCTGAATGGGA
GGCGTACAGCAAGGAGAATGAGGCACGGCTGCAGGAAACGGGCGGCATTG
ACATGATCAACGTGACCATCGGTCAAACACGTCTGCTGACCACAAAAAAG
ATGATGCAGTTCAGCGGCCTGATCGATCGTTGCGAGGCTGGAGCGACCGG
CAAGAACAGTCAGCCAAACGATGGCAGTGAGGATTCGAAACCGGTGCAGG
CTGAGGATCTGGAGGGCTGGTGGGACATGCTGCGCCTGCAGAGCGAGAAC
GTGGACAAGCGTTTCGATAACCTGAAACGTTGGAAGGCCAACGACTGGCT
GGATCCGGATGCCGTGGCCGAGGAACCCAAACAGCCGAAGCCCAAGCCCA
AGATAAGTCGCAACATGAAGATCAAATCGAAGGCCAAGCCGAGCAGCAAT
CTGCAGCAGTTCCTCCGCAAAGCCCATGCCAACATGAAGAAGACCAAGGT
GGAGGAGCCAACGCTGGAGGATGGCCTGCCCGCCACGTCCTCGCGCCACA
GTTCGCCGCGAGTAATCGTAGTTCGCAACCGCCGATCCTTTTCGCCCGCC
CGCACAGTACTCCGCATGTCCACCGGCGAGGGCCGTCAGTCGATTGCGCC
AAATGCGCTCCTGAAATCAGCGATTCTTGCGGCCGCCGAGCAGAACGCTG
CCAAGACGCCGCCGCCTAAGCCGCGCACCTCCATCCTCAAGACGCCCGGC
ACCACGAAACGCCAGAACCGTGGCGTGCTCTTCAGCGCCAAGAAGAGCGT
ACGACGATTCCAGTTCACCTACGAGGAGGGAAACATTAGCAACGACGAGA
CAGTGGGCGCCGACAAGTTGGAGGACTGCGAGGAGGACATGTCGCTGGAA
GCCTCCACGGAAAGCGGATCCCTGGAACAGAATCCGGGAAGGGATTCCAA
TCAGGAGAATGAAGCAACTCCTCGCACGTACACGCTGCGCAATCGGCGGG
TGAATCTGCGTCCCTCCTCCGAGTTTATGGCAAGCTTTCTAGACCAT
BO08283.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:26:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mars-RD | 2766 | CG17064-PD | 1..2763 | 17..2779 | 13815 | 100 | Plus |
| mars-RC | 2766 | CG17064-PC | 1..2763 | 17..2779 | 13815 | 100 | Plus |
| mars-RB | 2766 | CG17064-PB | 1..2763 | 17..2779 | 13815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:26:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mars-RD | 4465 | CG17064-RD | 1539..4309 | 9..2779 | 13840 | 100 | Plus |
| mars-RC | 3540 | CG17064-RC | 614..3384 | 9..2779 | 13840 | 100 | Plus |
| mars-RB | 3825 | CG17064-RB | 899..3669 | 9..2779 | 13840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:26:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13503028..13504542 | 9..1523 | 7560 | 99.9 | Plus |
| 2R | 25286936 | 2R | 13504599..13505855 | 1523..2779 | 6285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:26:19 has no hits.
BO08283.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:00:58 Download gff for
BO08283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mars-RA | 1..2766 | 17..2780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:19:26 Download gff for
BO08283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mars-RA | 228..3004 | 9..2788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:45 Download gff for
BO08283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mars-RA | 108..2870 | 17..2781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:00:59 Download gff for
BO08283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mars-RA | 228..3004 | 9..2788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:40 Download gff for
BO08283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mars-RB | 907..3669 | 17..2781 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:40 Download gff for
BO08283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13503036..13504542 | 17..1523 | 100 | -> | Plus |
| 2R | 13504600..13505855 | 1524..2781 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:45 Download gff for
BO08283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9390541..9392047 | 17..1523 | 100 | -> | Plus |
| arm_2R | 9392105..9393360 | 1524..2781 | 99 | | Plus |
BO08283.pep Sequence
Translation from 16 to 2797
> BO08283.pep
MQRHKELYKEQSLVLSPRNHCQENRDRLQAARAKKREDCFYQNRIISVSP
TPVKIKQLAAAQAALTQENVAPKLESPERLDTKPAELLKESNPKVSRQKL
YLQRYMEWKIAKTKEHKQQDQKRRGAAINVPTVKQSKALPKSQTFRVPDN
LASAKQKEAAPMFQPPKRCSLYMIANPTGKGKAAEPIKPSIPKPTSAAAP
PSSNTVAASSALARHKSAASATKIVPAIRQNNNPVALARQKAAARPIPNT
TKQTTSVRQPGIEAKKITTTIPRPTPATVTKAKTPGIRQQPPVVSTKPRL
PEPPAPRTARLPNVLSKPFEKPLGNKAPVTRRANVVKPQPIRGGGGAAAK
FKDTAGATSKAASHSIRMKATKIKSQYTRLQDNVRKLPQLKAELLHAATL
DIPPLTPLDDIHNPFIDQATSTQCKSNNSSGHLLEAFGDTILLSPVAPVK
AEGESSVKRQLLPEGKKEASGPVAKKKFDFTRYSVANSPAEDSLILDPQQ
TTVKEDTGDSTLVPEGTKTPPRRESNGMPNYLSPFVSVSRGKVNSRCEKE
KRNSFYLSNEESPLEVRRAIESVLYFRLQLENEITRLQALCAEWEAYSKE
NEARLQETGGIDMINVTIGQTRLLTTKKMMQFSGLIDRCEAGATGKNSQP
NDGSEDSKPVQAEDLEGWWDMLRLQSENVDKRFDNLKRWKANDWLDPDAV
AEEPKQPKPKPKISRNMKIKSKAKPSSNLQQFLRKAHANMKKTKVEEPTL
EDGLPATSSRHSSPRVIVVRNRRSFSPARTVLRMSTGEGRQSIAPNALLK
SAILAAAEQNAAKTPPPKPRTSILKTPGTTKRQNRGVLFSAKKSVRRFQF
TYEEGNISNDETVGADKLEDCEEDMSLEASTESGSLEQNPGRDSNQENEA
TPRTYTLRNRRVNLRPSSEFMASFLDH
BO08283.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:45:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mars-PD | 921 | CG17064-PD | 1..921 | 1..921 | 4709 | 100 | Plus |
| mars-PC | 921 | CG17064-PC | 1..921 | 1..921 | 4709 | 100 | Plus |
| mars-PB | 921 | CG17064-PB | 1..921 | 1..921 | 4709 | 100 | Plus |
| mars-PA | 921 | CG17064-PA | 1..921 | 1..921 | 4709 | 100 | Plus |
| vlc-PB | 583 | CG8390-PB | 341..484 | 557..704 | 170 | 32.1 | Plus |
