Clone Sequence Records
BO08284.3prime Sequence
934 bp (785 high quality bases) assembled on 2006-01-06
> BO08284.3prime
ATGGTCTAGAAAGCTTGCAAAGGCTTCTTCCTGAGGCGTATGTCCATTTA
GTGAGCCCAAAGCGGGCACGGGCATTCCTGCAGCTTTCATCTCCGCCACA
ATCCGCTTGTTGATAATGTTTCGGATGTTGGCATTCACATCCGGCAGAAG
TCCACCTGTTCGAGCTGCGTGCTCAATTCGCTGGACGACGTCGATTTCGC
GGCGCGATGATATCAGGTTCGTGACTAGCGCCTTGTCCATGTTGCCCACC
CGACCGATCCTGCCACAACGATGGATATAATCGGAGACGTGGAGCGGAAA
GTCAAAGTTGACCACATGTCGAGCTCGTGTGGTATCCAGGCCACGACTTC
CCACATCGGTGGTGGAAAGGACGTCGCAGTGACCGTTTTGGAACTGCTCG
AAGCGGCCAAGACGGATCTTCATCAGCATATCCCCATTCAGATTTAAGCA
GTTCACTCCGCTGTTGTTCAGGAAGATGGAAACGAAGTCACTGGTGGTGG
ACTTGTTGCTGAACACGATAAGAGGGCGACGTTTGGCAAGATCATGCTTC
ACGAGTGACAGAAGTGTGGCGGGCCGATCGGCCTTCGACAGCCGCAGGAA
CTTCTGCGTCACATGAGACATCAGTCGGTGCAGGTGCGGACTGACGACCT
CACGGATGGTGTCCACGTCTATGACTTTGTGAAGGATCTCTCTGGTGTTC
GTGGGCATGGTGGCCGAGGCCAGGATCATCTGGGTGCCAGCATCCTCCTT
TTGCACCAAGTGGAAGGGAAATCTCCTGAGGAAGTAGGAAAGTTTGTCTG
TGAACGTATCATCTAGGAGGGTGTCCGCTTCGTCTAGAACCAGATGACGA
ACCTGCTCCATGCGGTAGATGCCAGTGGTCACCAGTTTTGCTAGTGCACC
CAGAGTGGCGACCAGTATGTCCACCTCCTCGAAC
BO08284.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3561-PA | 1611 | CG3561-RA | 739..1608 | 888..19 | 4350 | 100 | Minus |
| CG3561-PA | 1611 | CG3561-RA | 693..734 | 934..893 | 210 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:13:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbp21E2-RA | 1732 | CG3561-RA | 745..1660 | 934..19 | 4535 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:13:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 812562..813308 | 765..19 | 3735 | 100 | Minus |
| 2L | 23513712 | 2L | 812328..812496 | 934..766 | 785 | 97.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:13:31 has no hits.
BO08284.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:43:03 Download gff for
BO08284.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3561-PA | 693..1611 | 18..934 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:35:48 Download gff for
BO08284.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3561-PA | 693..1611 | 18..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:48:10 Download gff for
BO08284.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dbp21E2-RA | 745..1665 | 11..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:54:38 Download gff for
BO08284.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dbp21E2-RA | 745..1665 | 11..934 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:54:38 Download gff for
BO08284.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 812328..812496 | 766..934 | 98 | -> | Minus |
| 2L | 812562..813313 | 11..765 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:48:10 Download gff for
BO08284.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 812328..812496 | 766..934 | 98 | -> | Minus |
| arm_2L | 812562..813313 | 11..765 | 99 | | Minus |
BO08284.5prime Sequence
872 bp (786 high quality bases) assembled on 2006-01-06
> BO08284.5prime
GAAGTTATCAGTCGACATGCTGAACTTGTCCGTGGTGCTCCGGGTGCAAT
CATCGCGCCATGTGGCTTCATATGCCACAGCGGCGGCGGCGGCAGTTAAG
ACGAAGCCACCAAAGGCAAAGTCCAAGGGCAAAAAGCAGAAGGGGGAGCC
CCTAATCTCCTGCAGAAGAAGCCAGTTCGATTTAACCCAATACGAGCAGA
CGGATGCCAAGTTTGGGAGTCTTTCGCTGGCCTCCAAGGGCTGGCTGCAC
AACAAATCCAAGGGAGACTTCTTCATCTTGAACGCCAGCGTGCGAGGTGA
GGAACTCCAGCAGGAAATGCAGACCGTCGATGAGTTCCTCGAGAGCACGG
GGATGCAGATTCATCCGCAACTCCTTGAGAACTTGCGAGTCGAGCTGGGC
ATCAAATTACTGACGGGAATCCAAAAACAGGGAATGCCCGTTGTCCATGG
AAATGAGCACTGCCTCATTGCCGCTGAAACTGGGTGTGGAAAAACAATTA
CATATCTCCTGCCTATCGTAGACAAACTCCTCCAGAAAGAAGTGGTCACC
GAACGAAAACTCAACACCCCCCGTGTCTTGATCCTCACTCCCGGCAGAGA
ACTAGCCACGCAGATTGCTGGGGTCACGGAGAAGCTCACCCAGGGCACCA
ATCTCAAAGTGCAATCTTTACTTGGCGGCAATACCAAGCAGCTTATGATG
AACCCACAGTTCGAGGAGGTGGACATACTGGTCGCCACTCTGGGTGCACT
TAGCAAACTGGTGACCACTGGCATCTACCGCATGGAGCAGGTTCGTCATC
TGGTTCTAGACGAAGCGGACACCCTCCTAGATGATACGTTCACAGACAAA
CTTTCCTACTTCCTCAGGAGAT
BO08284.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3561-PA | 1611 | CG3561-RA | 1..856 | 17..872 | 4255 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:13:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbp21E2-RA | 1732 | CG3561-RA | 52..908 | 16..872 | 4270 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:13:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 811635..812491 | 16..872 | 4270 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:13:37 has no hits.
BO08284.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:43:04 Download gff for
BO08284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3561-PA | 1..856 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:35:50 Download gff for
BO08284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3561-PA | 1..856 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:48:11 Download gff for
BO08284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dbp21E2-RA | 52..908 | 16..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:54:59 Download gff for
BO08284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dbp21E2-RA | 52..908 | 16..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:54:59 Download gff for
BO08284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 811635..812491 | 16..872 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:48:11 Download gff for
BO08284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 811635..812491 | 16..872 | 99 | | Plus |
BO08284.complete Sequence
1642 bp (1642 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631137
> BO08284.complete
GAAGTTATCAGTCGACATGCTGAACTTGTCCGTGGTGCTCCGGGTGCAAT
CATCGCGCCATGTGGCTTCATATGCCACAGCGGCGGCGGCGGCAGTTAAG
ACGAAGCCACCAAAGGCAAAGTCCAAGGGCAAAAAGCAGAAGGGGGAGCC
CCTAATCTCCTGCAGAAGAAGCCAGTTCGATTTAACCCAATACGAGCAGA
CGGATGCCAAGTTTGGGAGTCTTTCGCTGGCCTCCAAGGGCTGGCTGCAC
AACAAATCCAAGGGAGACTTCTTCATCTTGAACGCCAGCGTGCGAGGTGA
GGAACTCCAGCAGGAAATGCAGACCGTCGATGAGTTCCTCGAGAGCACGG
GGATGCAGATTCATCCGCAACTCCTTGAGAACTTGCGAGTCGAGCTGGGC
ATCAAATTACTGACGGGAATCCAAAAACAGGGAATGCCCGTTGTCCATGG
AAATGAGCACTGCCTCATTGCCGCTGAAACTGGGTGTGGAAAAACAATTA
CATATCTCCTGCCTATCGTAGACAAACTCCTCCAGAAAGAAGTGGTCACC
GAACGAAAACTCAACACCCCCCGTGTCTTGATCCTCACTCCCGGCAGAGA
ACTAGCCACGCAGATTGCTGGGGTCACGGAGAAGCTCACCCAGGGCACCA
ATCTCAAAGTGCAATCTTTACTTGGCGGCAATACCAAGCAGCTTATGATG
AACCCACAGTTCGAGGAGGTGGACATACTGGTCGCCACTCTGGGTGCACT
TAGCAAACTGGTGACCACTGGCATCTACCGCATGGAGCAGGTTCGTCATC
TGGTTCTAGACGAAGCGGACACCCTCCTAGATGATACGTTCACAGACAAA
CTTTCCTACTTCCTCAGGAGATTTCCCTTCCACTTGGTGCAAAAGGAGGA
TGCTGGCACCCAGATGATCCTGGCCTCGGCCACCATGCCCACGAACACCA
GAGAGATCCTTCACAAAGTCATAGACGTGGACACCATCCGTGAGGTCGTC
AGTCCGCACCTGCACCGACTGATGTCTCATGTGACGCAGAAGTTCCTGCG
GCTGTCGAAGGCCGATCGGCCCGCCACACTTCTGTCACTCGTGAAGCATG
ATCTTGCCAAACGTCGCCCTCTTATCGTGTTCAGCAACAAGTCCACCACC
AGTGACTTCGTTTCCATCTTCCTGAACAACAGCGGAGTGAACTGCTTAAA
TCTGAATGGGGATATGCTGATGAAGATCCGTCTTGGCCGCTTCGAGCAGT
TCCAAAACGGTCACTGCGACGTCCTTTCCACCACCGATGTGGGAAGTCGT
GGCCTGGATACCACACGAGCTCGACATGTGGTCAACTTTGACTTTCCGCT
CCACGTCTCCGATTATATCCATCGTTGTGGCAGGATCGGTCGGGTGGGCA
ACATGGACAAGGCGCTAGTCACGAACCTGATATCATCGCGCCGCGAAATC
GACGTCGTCCAGCGAATTGAGCACGCAGCTCGAACAGGTGGACTTCTGCC
GGATGTGAATGCCAACATCCGAAACATTATCAACAAGCGGATTGTGGCGG
AGATGAAAGCTGCAGGAATGCCCGTGCCCGCTTTGGGCTCACTAAATGGA
CATACGCCTCAGGAAGAAGCCTTTGCAAGCTTTCTAGACCAT
BO08284.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:42:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbp21E2-RA | 1611 | CG3561-PA | 1..1608 | 17..1624 | 8025 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:42:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbp21E2-RA | 1732 | CG3561-RA | 52..1660 | 16..1624 | 8030 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:42:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 811635..812496 | 16..877 | 4295 | 99.9 | Plus |
| 2L | 23513712 | 2L | 812562..813308 | 878..1624 | 3735 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:42:12 has no hits.
BO08284.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:00 Download gff for
BO08284.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| KH1-RA | 1..1611 | 17..1625 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:19:28 Download gff for
BO08284.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| KH1-RA | 2..1617 | 15..1632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:33 Download gff for
BO08284.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dbp21E2-RA | 53..1660 | 17..1626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:00 Download gff for
BO08284.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| KH1-RA | 2..1617 | 15..1632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:40 Download gff for
BO08284.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dbp21E2-RA | 53..1660 | 17..1626 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:40 Download gff for
BO08284.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 811636..812496 | 17..877 | 99 | -> | Plus |
| 2L | 812562..813308 | 878..1626 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:33 Download gff for
BO08284.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 811636..812496 | 17..877 | 99 | -> | Plus |
| arm_2L | 812562..813308 | 878..1626 | 99 | | Plus |
BO08284.pep Sequence
Translation from 16 to 1642
> BO08284.pep
MLNLSVVLRVQSSRHVASYATAAAAAVKTKPPKAKSKGKKQKGEPLISCR
RSQFDLTQYEQTDAKFGSLSLASKGWLHNKSKGDFFILNASVRGEELQQE
MQTVDEFLESTGMQIHPQLLENLRVELGIKLLTGIQKQGMPVVHGNEHCL
IAAETGCGKTITYLLPIVDKLLQKEVVTERKLNTPRVLILTPGRELATQI
AGVTEKLTQGTNLKVQSLLGGNTKQLMMNPQFEEVDILVATLGALSKLVT
TGIYRMEQVRHLVLDEADTLLDDTFTDKLSYFLRRFPFHLVQKEDAGTQM
ILASATMPTNTREILHKVIDVDTIREVVSPHLHRLMSHVTQKFLRLSKAD
RPATLLSLVKHDLAKRRPLIVFSNKSTTSDFVSIFLNNSGVNCLNLNGDM
LMKIRLGRFEQFQNGHCDVLSTTDVGSRGLDTTRARHVVNFDFPLHVSDY
IHRCGRIGRVGNMDKALVTNLISSRREIDVVQRIEHAARTGGLLPDVNAN
IRNIINKRIVAEMKAAGMPVPALGSLNGHTPQEEAFASFLDH
BO08284.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:45:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbp21E2-PA | 536 | CG3561-PA | 1..536 | 1..536 | 2715 | 100 | Plus |
| vas-PA | 661 | CG3506-PA | 235..615 | 92..490 | 406 | 29.8 | Plus |
| vas-PC | 661 | CG43081-PC | 235..615 | 92..490 | 406 | 29.8 | Plus |
| bel-PA | 798 | CG9748-PA | 283..659 | 108..466 | 399 | 29.5 | Plus |
| bel-PB | 801 | CG9748-PB | 283..659 | 108..466 | 399 | 29.5 | Plus |
