Clone BO08286 Report

Search the DGRC for BO08286

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:82
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptCG9300-RA
Protein status:BO08286.pep: validated full length
Sequenced Size:2053

Clone Sequence Records

BO08286.3prime Sequence

959 bp (762 high quality bases) assembled on 2006-01-06

> BO08286.3prime
ATGGTCTAGAAAGCTTGCGTAGAGCACCACCTCCTCAATCCCATACCAAT
TTGTAGAGTACATCGGTTTCACCTGACGTTTCTCCACAATATTTGTGAGC
AGCGGCAGCAAATTGGCTAAATCGAATAAACTTTCTTCGTAGAAGGAGAG
GAAAGTGGCCCATTCGGAGAGAGTCTCGAGCAATGCCTCGTCCTTGGAAA
TAATCAGCAGGGTGAAATGGGAGGTCAAGATGCAGCCAAACCACTGGATG
GCCTGTACTTCCGTTTGAATTGGCGAGCAATTCAGGCTGGGTCGTTCCTC
CAACTGGACATTGGGGTCATTGACCAGATCGAACAGGTGGCTCATCAAGT
GCTGGACATGGGAGAGCTCCAGTCGGTAACGCAGATGCTCCTCGATGCCG
GTGGCATCAAATCTGCAGGCTAGCACTGCATTTAGCAGTTCCTTGTTGGA
GTAACTCTTAGCCGTTGGTACAGCGTTGGAATCGCCATTAATAGCATGAC
GAGGCTTGCATTTATCTAGAGCATAGCGCAGTGACCAGGCCAGCATTCTC
TCCGATATGTTGCTGTAGCGCCTAAGACACATCAGGACATGCTCTGTGTT
GTCGGTCTTGATGAAAAGTGTGAGAATCCTTTCGATGATTTCCTCTTCCC
CAGCTCCACTTCTCTCCAGCTGCCGGACTAAAGCCTGCACAGCTGTATTA
TTCGGCCCCTTGTCAAAGAAGTTCGTCATTAGAGTGACACTCACGTCCTC
CAGCCCATTCTCGCAAATGGTCGCCTCTCCATGAACATGCTGTTTGATAA
TTTCGTCGATCTCTTGATCCACTACCTCGGGAGGATCGTAAGCCAACTCC
CGGCCATCAGCTTTTTGGTAGTCCCAAGTGGGCATCTGCTTATTTAACTG
GGATTTCACAGCTCTATAATTAAGGGGTTTCGTACTACCATCAAAACTAA
TAAGCGACT

BO08286.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG9300-PA 2022 CG9300-RA 1164..2019 874..19 4280 100 Minus
CG9300-PA 2022 CG9300-RA 1079..1159 959..879 305 95 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG9300-RA 2156 CG9300-RA 1135..2075 959..19 4600 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:41:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19553746..19554686 959..19 4600 99.3 Minus
Blast to na_te.dros performed on 2015-02-12 04:41:11 has no hits.

BO08286.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:43:06 Download gff for BO08286.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9300-PA 1079..2022 18..959 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:35:54 Download gff for BO08286.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9300-PA 1079..2022 18..959 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:39:34 Download gff for BO08286.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9300-RA 1135..2075 19..959 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:16:01 Download gff for BO08286.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9300-RA 1135..2075 19..959 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:16:01 Download gff for BO08286.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19553746..19554686 19..959 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:39:34 Download gff for BO08286.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19546846..19547786 19..959 99   Minus

BO08286.5prime Sequence

880 bp (875 high quality bases) assembled on 2006-01-06

> BO08286.5prime
GAAGTTATCAGTCGACATGTCCAAATTCCTGTCCTACTACAACCTGTTTC
CCATCCCCGACCCCAAGGAGTTTCTGGGCCTAGCTGCAGACAGGGAAAAT
GGCAATGTGGTGACTACGTTGGCGCGCAACGTGGTGGTTGTTTTGAACAT
CAGCACACAAAAGCAGTTGCTCAGTTGGTCCCTGCCGGAGAAGCTTTCCT
CCAAGGTTATATACGATCCCAGCAGCCAGAAGTATGTGGGCGTCTTTGGA
AATCACGCGCTGCGTCTTTGGGATGTGGACACCAGTGATGTGTCCAAGTG
CAAGAAGCTGAAGTTTCAGAAAAGCATCGCTCACGTGGTGGCAACCGAAC
AGGAGGCATTAATCCTCTACAGCGATGGCGAGTGCCAAACCCTTTCCCAG
GCATTGGCTTCGAGAAAGGACCAGAAGGAGGATACGGCTGAGCAACTGGC
CCTAGCCGCCAGCAAGGTCATCAGCAAGCCCACAGTCCACGCATTGGCCC
AGGGCCAGCAGGTGCTCACATATTTCGAGGAAACAAAGGCCACCGGCGAA
ATGCAGCTTATCCGCCTCTCCCTGGACACGGCTGACCGGCGGAAGTACCT
CATTAAGCGGGAAGAGGTTCGCCTCACGGGATATGCTGTCGTCGAGGGCG
ATGCAGATCCTCAGTTGCTGACCATTTGGTCTGATAAACGCATCTTCATG
CTTAACCTGGCGGAGGCCACATCAGAGCGATCCCCTGGACAATTCGTATC
TATGCTGGCCGAGCTGAATGTGGAGAGCAAGCTATCCGTGCACGGAGTCT
CACGAAACTTTGCTGCCATCTACGGCGCCNACTATGGGCAGGAAGGCGCC
TCTCTGTTGGTTTATAACACTCAGTTTAAG

BO08286.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG9300-PA 2022 CG9300-RA 1..864 17..880 4301 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:56:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG9300-RA 2156 CG9300-RA 57..920 17..880 4309 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:56:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19552883..19553249 312..678 1835 100 Plus
3L 28110227 3L 19553329..19553531 678..880 1004 99.5 Plus
3L 28110227 3L 19552666..19552830 149..313 825 100 Plus
3L 28110227 3L 19552476..19552607 17..148 660 100 Plus
Blast to na_te.dros performed on 2015-02-12 15:56:10 has no hits.

BO08286.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:43:07 Download gff for BO08286.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9300-PA 1..864 17..880 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:35:56 Download gff for BO08286.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9300-PA 1..864 17..880 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:10:34 Download gff for BO08286.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9300-RA 57..920 17..880 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:27:38 Download gff for BO08286.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9300-RA 57..920 17..880 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:27:38 Download gff for BO08286.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19552476..19552607 17..148 100 -> Plus
3L 19552666..19552830 149..313 100 -> Plus
3L 19552885..19553248 314..677 100 -> Plus
3L 19553329..19553531 678..880 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:10:34 Download gff for BO08286.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19545576..19545707 17..148 100 -> Plus
arm_3L 19545766..19545930 149..313 100 -> Plus
arm_3L 19545985..19546348 314..677 100 -> Plus
arm_3L 19546429..19546631 678..880 99   Plus

BO08286.complete Sequence

2053 bp (2053 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ638657

> BO08286.complete
GAAGTTATCAGTCGACATGTCCAAATTCCTGTCCTACTACAACCTGTTTC
CCATCCCCGACCCCAAGGAGTTTCTGGGCCTAGCTGCAGACAGGGAAAAT
GGCAATGTGGTGACTACGTTGGCGCGCAACGTGGTGGTTGTTTTGAACAT
CAGCACACAAAAGCAGTTGCTCAGTTGGTCCCTGCCGGAGAAGCTTTCCT
CCAAGGTTATATACGATCCCAGCAGCCAGAAGTATGTGGGCGTCTTTGGA
AATCACGCGCTGCGTCTTTGGGATGTGGACACCAGTGATGTGTCCAAGTG
CAAGAAGCTGAAGTTTCAGAAAAGCATCGCTCACGTGGTGGCAACCGAAC
AGGAGGCATTAATCCTCTACAGCGATGGCGAGTGCCAAACCCTTTCCCAG
GCATTGGCTTCGAGAAAGGACCAGAAGGAGGATACGGCTGAGCAACTGGC
CCTAGCCGCCAGCAAGGTCATCAGCAAGCCCACAGTCCACGCATTGGCCC
AGGGCCAGCAGGTGCTCACATATTTCGAGGAAACAAAGGCCACCGGCGAA
ATGCAGCTTATCCGCCTCTCCCTGGACACGGCTGACCGGCGGAAGTACCT
CATTAAGCGGGAAGAGGTTCGCCTCACGGGATATGCTGTCGTCGAGGGCG
ATGCAGATCCTCAGTTGCTGACCATTTGGTCTGATAAACGCATCTTCATG
CTTAACCTGGCGGAGGCCACATCAGAGCGATCCCCTGGACAATTCGTATC
TATGCTGGCCGAGCTGAATGTGGAGAGCAAGCTATCCGTGCACGGAGTCT
CACGAAACTTTGCTGCCATCTACGGCGCCAACTATGGGCAGGAAGGCGCC
TCTCTGTTGGTTTATAACACTCAGTTTAAGGTGGTGAACGCGAAGCAGTA
CTTTAAAGTGTACCTGGACTTCTCTCGCCTTTGGGCCGGGAATGAGCACA
TCCTTTTGGCCATGGGGCATAATATAGCGGCGGTCCGTTACCGAATGAAC
CGGGAGGTGCTGGTGGACATGTTGGGCTCTCAGTTTAGTGATACTCACCT
CTCGCCTATTGAATTGGATCACATAAACGAGGAGGAGTATCTGGAGTCGC
TTATTAAGTTTGATGGTAGTACGAAACCCTTAAATTATAGAGCTGTGAAA
TCCCAGTTAAATAAGCAGATGCCCAACTTGGACTACCAAAAAGCTGATGG
CCGGGAGTTGGCTTACGATCCTCCCGAGGTAGTGGATCAAGAGATCGACG
AAATTATCAAACAGCATGTTCATGGAGAGGCGACCATTTGCGAGAATGGG
CTGGAGGACGTGAGTGTCACTCTAATGACGAACTTCTTTGACAAGGGGCC
GAATAATACAGCTGTGCAGGCTTTAGTCCGGCAGCTGGAGAGAAGTGGAG
CTGGGGAAGAGGAAATCATCGAAAGGATTCTCACACTTTTCATCAAGACC
GACAACACAGAGCATGTCCTGATGTGTCTTAGGCGCTACAGCAACATATC
GGAGAGAATGCTGGCCTGGTCACTGCGCTATGCTCTAGATAAATGCAAGC
CTCGTCATGCTATTAATGGCGATTCCAACGCTGTACCAACGGCTAAGAGT
TACTCCAACAAGGAACTGCTAAATGCAGTGCTAGCCTGCAGATTTGATGC
CACCGGCATCGAGGAGCATCTGCGTTACCGACTGGAGCTCTCCCATGTCC
AGCACTTGATGAGCCACCTGTTCGATCTGGTCAATGACCCCAATGTCCAG
TTGGAGGAACGACCCAGCCTGAATTGCTCGCCAATTCAAACGGAAGTACA
GGCCATCCAGTGGTTTGGCTGCATCTTGACCTCCCATTTCACCCTGCTGA
TTATTTCCAAGGACGAGGCATTGCTCGAGACTCTCTCCGAATGGGCCACT
TTCCTCTCCTTCTACGAAGAAAGTTTATTCGATTTAGCCAATTTGCTGCC
GCTGCTCACAAATATTGTGGAGAAACGTCAGGTGAAACCGATGTACTCTA
CAAATTGGTATGGGATTGAGGAGGTGGTGCTCTACGCAAGCTTTCTAGAC
CAT

BO08286.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:29:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG9300-RA 2022 CG9300-PA 1..2019 17..2035 10095 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:29:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG9300-RA 2156 CG9300-RA 57..2075 17..2035 10095 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:29:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19553329..19554686 678..2035 6790 100 Plus
3L 28110227 3L 19552883..19553249 312..678 1835 100 Plus
3L 28110227 3L 19552666..19552830 149..313 825 100 Plus
3L 28110227 3L 19552476..19552607 17..148 660 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:29:25 has no hits.

BO08286.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:01 Download gff for BO08286.complete
Subject Subject Range Query Range Percent Splice Strand
CG9300-RA 1..2022 17..2036 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:19:30 Download gff for BO08286.complete
Subject Subject Range Query Range Percent Splice Strand
CG9300-RA 55..2073 17..2035 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:41:55 Download gff for BO08286.complete
Subject Subject Range Query Range Percent Splice Strand
CG9300-RA 57..2075 17..2037 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:01 Download gff for BO08286.complete
Subject Subject Range Query Range Percent Splice Strand
CG9300-RA 55..2073 17..2035 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:07 Download gff for BO08286.complete
Subject Subject Range Query Range Percent Splice Strand
CG9300-RA 57..2075 17..2037 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:07 Download gff for BO08286.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19552885..19553248 314..677 100 -> Plus
3L 19552666..19552830 149..313 100 -> Plus
3L 19552476..19552607 17..148 100 -> Plus
3L 19553329..19554686 678..2037 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:41:55 Download gff for BO08286.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19545576..19545707 17..148 100 -> Plus
arm_3L 19545766..19545930 149..313 100 -> Plus
arm_3L 19545985..19546348 314..677 100 -> Plus
arm_3L 19546429..19547786 678..2037 99   Plus

BO08286.pep Sequence

Translation from 16 to 2053

> BO08286.pep
MSKFLSYYNLFPIPDPKEFLGLAADRENGNVVTTLARNVVVVLNISTQKQ
LLSWSLPEKLSSKVIYDPSSQKYVGVFGNHALRLWDVDTSDVSKCKKLKF
QKSIAHVVATEQEALILYSDGECQTLSQALASRKDQKEDTAEQLALAASK
VISKPTVHALAQGQQVLTYFEETKATGEMQLIRLSLDTADRRKYLIKREE
VRLTGYAVVEGDADPQLLTIWSDKRIFMLNLAEATSERSPGQFVSMLAEL
NVESKLSVHGVSRNFAAIYGANYGQEGASLLVYNTQFKVVNAKQYFKVYL
DFSRLWAGNEHILLAMGHNIAAVRYRMNREVLVDMLGSQFSDTHLSPIEL
DHINEEEYLESLIKFDGSTKPLNYRAVKSQLNKQMPNLDYQKADGRELAY
DPPEVVDQEIDEIIKQHVHGEATICENGLEDVSVTLMTNFFDKGPNNTAV
QALVRQLERSGAGEEEIIERILTLFIKTDNTEHVLMCLRRYSNISERMLA
WSLRYALDKCKPRHAINGDSNAVPTAKSYSNKELLNAVLACRFDATGIEE
HLRYRLELSHVQHLMSHLFDLVNDPNVQLEERPSLNCSPIQTEVQAIQWF
GCILTSHFTLLIISKDEALLETLSEWATFLSFYEESLFDLANLLPLLTNI
VEKRQVKPMYSTNWYGIEEVVLYASFLDH

BO08286.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:45:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG9300-PA 673 CG9300-PA 1..673 1..673 3442 100 Plus