Clone Sequence Records
BO08286.3prime Sequence
959 bp (762 high quality bases) assembled on 2006-01-06
> BO08286.3prime
ATGGTCTAGAAAGCTTGCGTAGAGCACCACCTCCTCAATCCCATACCAAT
TTGTAGAGTACATCGGTTTCACCTGACGTTTCTCCACAATATTTGTGAGC
AGCGGCAGCAAATTGGCTAAATCGAATAAACTTTCTTCGTAGAAGGAGAG
GAAAGTGGCCCATTCGGAGAGAGTCTCGAGCAATGCCTCGTCCTTGGAAA
TAATCAGCAGGGTGAAATGGGAGGTCAAGATGCAGCCAAACCACTGGATG
GCCTGTACTTCCGTTTGAATTGGCGAGCAATTCAGGCTGGGTCGTTCCTC
CAACTGGACATTGGGGTCATTGACCAGATCGAACAGGTGGCTCATCAAGT
GCTGGACATGGGAGAGCTCCAGTCGGTAACGCAGATGCTCCTCGATGCCG
GTGGCATCAAATCTGCAGGCTAGCACTGCATTTAGCAGTTCCTTGTTGGA
GTAACTCTTAGCCGTTGGTACAGCGTTGGAATCGCCATTAATAGCATGAC
GAGGCTTGCATTTATCTAGAGCATAGCGCAGTGACCAGGCCAGCATTCTC
TCCGATATGTTGCTGTAGCGCCTAAGACACATCAGGACATGCTCTGTGTT
GTCGGTCTTGATGAAAAGTGTGAGAATCCTTTCGATGATTTCCTCTTCCC
CAGCTCCACTTCTCTCCAGCTGCCGGACTAAAGCCTGCACAGCTGTATTA
TTCGGCCCCTTGTCAAAGAAGTTCGTCATTAGAGTGACACTCACGTCCTC
CAGCCCATTCTCGCAAATGGTCGCCTCTCCATGAACATGCTGTTTGATAA
TTTCGTCGATCTCTTGATCCACTACCTCGGGAGGATCGTAAGCCAACTCC
CGGCCATCAGCTTTTTGGTAGTCCCAAGTGGGCATCTGCTTATTTAACTG
GGATTTCACAGCTCTATAATTAAGGGGTTTCGTACTACCATCAAAACTAA
TAAGCGACT
BO08286.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9300-PA | 2022 | CG9300-RA | 1164..2019 | 874..19 | 4280 | 100 | Minus |
CG9300-PA | 2022 | CG9300-RA | 1079..1159 | 959..879 | 305 | 95 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:41:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9300-RA | 2156 | CG9300-RA | 1135..2075 | 959..19 | 4600 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:41:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19553746..19554686 | 959..19 | 4600 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:41:11 has no hits.
BO08286.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:43:06 Download gff for
BO08286.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9300-PA | 1079..2022 | 18..959 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:35:54 Download gff for
BO08286.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9300-PA | 1079..2022 | 18..959 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:39:34 Download gff for
BO08286.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9300-RA | 1135..2075 | 19..959 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:16:01 Download gff for
BO08286.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9300-RA | 1135..2075 | 19..959 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:16:01 Download gff for
BO08286.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19553746..19554686 | 19..959 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:39:34 Download gff for
BO08286.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19546846..19547786 | 19..959 | 99 | | Minus |
BO08286.5prime Sequence
880 bp (875 high quality bases) assembled on 2006-01-06
> BO08286.5prime
GAAGTTATCAGTCGACATGTCCAAATTCCTGTCCTACTACAACCTGTTTC
CCATCCCCGACCCCAAGGAGTTTCTGGGCCTAGCTGCAGACAGGGAAAAT
GGCAATGTGGTGACTACGTTGGCGCGCAACGTGGTGGTTGTTTTGAACAT
CAGCACACAAAAGCAGTTGCTCAGTTGGTCCCTGCCGGAGAAGCTTTCCT
CCAAGGTTATATACGATCCCAGCAGCCAGAAGTATGTGGGCGTCTTTGGA
AATCACGCGCTGCGTCTTTGGGATGTGGACACCAGTGATGTGTCCAAGTG
CAAGAAGCTGAAGTTTCAGAAAAGCATCGCTCACGTGGTGGCAACCGAAC
AGGAGGCATTAATCCTCTACAGCGATGGCGAGTGCCAAACCCTTTCCCAG
GCATTGGCTTCGAGAAAGGACCAGAAGGAGGATACGGCTGAGCAACTGGC
CCTAGCCGCCAGCAAGGTCATCAGCAAGCCCACAGTCCACGCATTGGCCC
AGGGCCAGCAGGTGCTCACATATTTCGAGGAAACAAAGGCCACCGGCGAA
ATGCAGCTTATCCGCCTCTCCCTGGACACGGCTGACCGGCGGAAGTACCT
CATTAAGCGGGAAGAGGTTCGCCTCACGGGATATGCTGTCGTCGAGGGCG
ATGCAGATCCTCAGTTGCTGACCATTTGGTCTGATAAACGCATCTTCATG
CTTAACCTGGCGGAGGCCACATCAGAGCGATCCCCTGGACAATTCGTATC
TATGCTGGCCGAGCTGAATGTGGAGAGCAAGCTATCCGTGCACGGAGTCT
CACGAAACTTTGCTGCCATCTACGGCGCCNACTATGGGCAGGAAGGCGCC
TCTCTGTTGGTTTATAACACTCAGTTTAAG
BO08286.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9300-PA | 2022 | CG9300-RA | 1..864 | 17..880 | 4301 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:56:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9300-RA | 2156 | CG9300-RA | 57..920 | 17..880 | 4309 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:56:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19552883..19553249 | 312..678 | 1835 | 100 | Plus |
3L | 28110227 | 3L | 19553329..19553531 | 678..880 | 1004 | 99.5 | Plus |
3L | 28110227 | 3L | 19552666..19552830 | 149..313 | 825 | 100 | Plus |
3L | 28110227 | 3L | 19552476..19552607 | 17..148 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 15:56:10 has no hits.
BO08286.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:43:07 Download gff for
BO08286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9300-PA | 1..864 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:35:56 Download gff for
BO08286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9300-PA | 1..864 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:10:34 Download gff for
BO08286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9300-RA | 57..920 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:27:38 Download gff for
BO08286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9300-RA | 57..920 | 17..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:27:38 Download gff for
BO08286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19552476..19552607 | 17..148 | 100 | -> | Plus |
3L | 19552666..19552830 | 149..313 | 100 | -> | Plus |
3L | 19552885..19553248 | 314..677 | 100 | -> | Plus |
3L | 19553329..19553531 | 678..880 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:10:34 Download gff for
BO08286.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19545576..19545707 | 17..148 | 100 | -> | Plus |
arm_3L | 19545766..19545930 | 149..313 | 100 | -> | Plus |
arm_3L | 19545985..19546348 | 314..677 | 100 | -> | Plus |
arm_3L | 19546429..19546631 | 678..880 | 99 | | Plus |
BO08286.complete Sequence
2053 bp (2053 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ638657
> BO08286.complete
GAAGTTATCAGTCGACATGTCCAAATTCCTGTCCTACTACAACCTGTTTC
CCATCCCCGACCCCAAGGAGTTTCTGGGCCTAGCTGCAGACAGGGAAAAT
GGCAATGTGGTGACTACGTTGGCGCGCAACGTGGTGGTTGTTTTGAACAT
CAGCACACAAAAGCAGTTGCTCAGTTGGTCCCTGCCGGAGAAGCTTTCCT
CCAAGGTTATATACGATCCCAGCAGCCAGAAGTATGTGGGCGTCTTTGGA
AATCACGCGCTGCGTCTTTGGGATGTGGACACCAGTGATGTGTCCAAGTG
CAAGAAGCTGAAGTTTCAGAAAAGCATCGCTCACGTGGTGGCAACCGAAC
AGGAGGCATTAATCCTCTACAGCGATGGCGAGTGCCAAACCCTTTCCCAG
GCATTGGCTTCGAGAAAGGACCAGAAGGAGGATACGGCTGAGCAACTGGC
CCTAGCCGCCAGCAAGGTCATCAGCAAGCCCACAGTCCACGCATTGGCCC
AGGGCCAGCAGGTGCTCACATATTTCGAGGAAACAAAGGCCACCGGCGAA
ATGCAGCTTATCCGCCTCTCCCTGGACACGGCTGACCGGCGGAAGTACCT
CATTAAGCGGGAAGAGGTTCGCCTCACGGGATATGCTGTCGTCGAGGGCG
ATGCAGATCCTCAGTTGCTGACCATTTGGTCTGATAAACGCATCTTCATG
CTTAACCTGGCGGAGGCCACATCAGAGCGATCCCCTGGACAATTCGTATC
TATGCTGGCCGAGCTGAATGTGGAGAGCAAGCTATCCGTGCACGGAGTCT
CACGAAACTTTGCTGCCATCTACGGCGCCAACTATGGGCAGGAAGGCGCC
TCTCTGTTGGTTTATAACACTCAGTTTAAGGTGGTGAACGCGAAGCAGTA
CTTTAAAGTGTACCTGGACTTCTCTCGCCTTTGGGCCGGGAATGAGCACA
TCCTTTTGGCCATGGGGCATAATATAGCGGCGGTCCGTTACCGAATGAAC
CGGGAGGTGCTGGTGGACATGTTGGGCTCTCAGTTTAGTGATACTCACCT
CTCGCCTATTGAATTGGATCACATAAACGAGGAGGAGTATCTGGAGTCGC
TTATTAAGTTTGATGGTAGTACGAAACCCTTAAATTATAGAGCTGTGAAA
TCCCAGTTAAATAAGCAGATGCCCAACTTGGACTACCAAAAAGCTGATGG
CCGGGAGTTGGCTTACGATCCTCCCGAGGTAGTGGATCAAGAGATCGACG
AAATTATCAAACAGCATGTTCATGGAGAGGCGACCATTTGCGAGAATGGG
CTGGAGGACGTGAGTGTCACTCTAATGACGAACTTCTTTGACAAGGGGCC
GAATAATACAGCTGTGCAGGCTTTAGTCCGGCAGCTGGAGAGAAGTGGAG
CTGGGGAAGAGGAAATCATCGAAAGGATTCTCACACTTTTCATCAAGACC
GACAACACAGAGCATGTCCTGATGTGTCTTAGGCGCTACAGCAACATATC
GGAGAGAATGCTGGCCTGGTCACTGCGCTATGCTCTAGATAAATGCAAGC
CTCGTCATGCTATTAATGGCGATTCCAACGCTGTACCAACGGCTAAGAGT
TACTCCAACAAGGAACTGCTAAATGCAGTGCTAGCCTGCAGATTTGATGC
CACCGGCATCGAGGAGCATCTGCGTTACCGACTGGAGCTCTCCCATGTCC
AGCACTTGATGAGCCACCTGTTCGATCTGGTCAATGACCCCAATGTCCAG
TTGGAGGAACGACCCAGCCTGAATTGCTCGCCAATTCAAACGGAAGTACA
GGCCATCCAGTGGTTTGGCTGCATCTTGACCTCCCATTTCACCCTGCTGA
TTATTTCCAAGGACGAGGCATTGCTCGAGACTCTCTCCGAATGGGCCACT
TTCCTCTCCTTCTACGAAGAAAGTTTATTCGATTTAGCCAATTTGCTGCC
GCTGCTCACAAATATTGTGGAGAAACGTCAGGTGAAACCGATGTACTCTA
CAAATTGGTATGGGATTGAGGAGGTGGTGCTCTACGCAAGCTTTCTAGAC
CAT
BO08286.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:29:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9300-RA | 2022 | CG9300-PA | 1..2019 | 17..2035 | 10095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:29:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9300-RA | 2156 | CG9300-RA | 57..2075 | 17..2035 | 10095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:29:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19553329..19554686 | 678..2035 | 6790 | 100 | Plus |
3L | 28110227 | 3L | 19552883..19553249 | 312..678 | 1835 | 100 | Plus |
3L | 28110227 | 3L | 19552666..19552830 | 149..313 | 825 | 100 | Plus |
3L | 28110227 | 3L | 19552476..19552607 | 17..148 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:29:25 has no hits.
BO08286.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:01 Download gff for
BO08286.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9300-RA | 1..2022 | 17..2036 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:19:30 Download gff for
BO08286.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9300-RA | 55..2073 | 17..2035 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:41:55 Download gff for
BO08286.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9300-RA | 57..2075 | 17..2037 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:01 Download gff for
BO08286.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9300-RA | 55..2073 | 17..2035 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:07 Download gff for
BO08286.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9300-RA | 57..2075 | 17..2037 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:07 Download gff for
BO08286.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19552885..19553248 | 314..677 | 100 | -> | Plus |
3L | 19552666..19552830 | 149..313 | 100 | -> | Plus |
3L | 19552476..19552607 | 17..148 | 100 | -> | Plus |
3L | 19553329..19554686 | 678..2037 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:41:55 Download gff for
BO08286.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19545576..19545707 | 17..148 | 100 | -> | Plus |
arm_3L | 19545766..19545930 | 149..313 | 100 | -> | Plus |
arm_3L | 19545985..19546348 | 314..677 | 100 | -> | Plus |
arm_3L | 19546429..19547786 | 678..2037 | 99 | | Plus |
BO08286.pep Sequence
Translation from 16 to 2053
> BO08286.pep
MSKFLSYYNLFPIPDPKEFLGLAADRENGNVVTTLARNVVVVLNISTQKQ
LLSWSLPEKLSSKVIYDPSSQKYVGVFGNHALRLWDVDTSDVSKCKKLKF
QKSIAHVVATEQEALILYSDGECQTLSQALASRKDQKEDTAEQLALAASK
VISKPTVHALAQGQQVLTYFEETKATGEMQLIRLSLDTADRRKYLIKREE
VRLTGYAVVEGDADPQLLTIWSDKRIFMLNLAEATSERSPGQFVSMLAEL
NVESKLSVHGVSRNFAAIYGANYGQEGASLLVYNTQFKVVNAKQYFKVYL
DFSRLWAGNEHILLAMGHNIAAVRYRMNREVLVDMLGSQFSDTHLSPIEL
DHINEEEYLESLIKFDGSTKPLNYRAVKSQLNKQMPNLDYQKADGRELAY
DPPEVVDQEIDEIIKQHVHGEATICENGLEDVSVTLMTNFFDKGPNNTAV
QALVRQLERSGAGEEEIIERILTLFIKTDNTEHVLMCLRRYSNISERMLA
WSLRYALDKCKPRHAINGDSNAVPTAKSYSNKELLNAVLACRFDATGIEE
HLRYRLELSHVQHLMSHLFDLVNDPNVQLEERPSLNCSPIQTEVQAIQWF
GCILTSHFTLLIISKDEALLETLSEWATFLSFYEESLFDLANLLPLLTNI
VEKRQVKPMYSTNWYGIEEVVLYASFLDH
BO08286.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:45:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9300-PA | 673 | CG9300-PA | 1..673 | 1..673 | 3442 | 100 | Plus |