Clone BO08290 Report

Search the DGRC for BO08290

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:82
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptZnT63C-RA
Protein status:BO08290.pep: validated full length
Sequenced Size:1381

Clone Sequence Records

BO08290.3prime Sequence

851 bp (848 high quality bases) assembled on 2006-01-06

> BO08290.3prime
ATGGTCTAGAAAGCTTGCAACCAAATCGCTCTTCGGCGTTGACGTGGCCC
CTATCGCAGCCACGGGCGCTCCTGTGCTGGCCCCACCAGTGGCTCCCTGG
TTGCCACTGGACGTGGCCTCCAGCAGGGAACCCGCCTCCACATCGCCGGC
CTGTCGGGCGGCATTCCGCTGGCGGCACAGATACGGCGAGTTGGTGGGTG
AGGGCAGTTGGTTCAATTTGTTGTTGTTTTGGCAGCACGTGGCCTTGACA
CATCCTTCTTCCGTGGTAGGACAATCCAACGCGCAGCAGTCGGAGCCGCT
GATGTTGATGCTGGAGGTGCCATCGGACATGTTGCAGCCTTCGATCTCGC
TGAACTCTGGCTGAATGGTGGTAGAGTGGATACCCTCGTTGTGGAAGAAC
TCCTTCACCTTTTCGGCAATCTTCATGTACTCCGAAAGGTTACGGCACCT
AATATGGGCAGAGGCGATGATGCGGTCGCCGGCCAGTTGCCACACATGGA
ACTCGTGCACAGCCAGCACGCCATCAACTTTCTCCAGAAGCCTCTTCTGA
ATGGCATCCACCTGGATGTGGGTGGGCACCGTTTGGAGCAGAATTAAAGC
GGACTCGCGCAGCAGCGGCCACACGGAGTGCAGGATCAAAACAACCAAAA
CGATGGACAGAGCGGGATCCATGTAGTACCGGTACTTCCACTCCGTCTTC
CACACCACCACAGCACTGATTACGACAATGATGCTGCCAAGGGCATCGCT
CAAAACGTGCAAGAAGGCGCCGCGCATATTCATCTGGCCGGGATCATGGC
TGTGTCCATGGCTGGATTTCTTGACCGGTGCCTTTTCCTTCTGCTTCTCG
T

BO08290.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG17723-PA 1350 CG17723-RA 515..1347 851..19 4165 100 Minus
CG17723-PB 1350 CG17723-RB 515..1347 851..19 4165 100 Minus
CG17723-PC 1350 CG17723-RC 515..1347 851..19 4165 100 Minus
CG17723-PD 1350 CG17723-RD 515..1347 851..19 4165 100 Minus
CG17723-PE 1350 CG17723-RE 515..1347 851..19 4165 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:56:56
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT63C-RG 1959 CG17723-RG 660..1492 851..19 4165 100 Minus
ZnT63C-RF 2033 CG17723-RF 734..1566 851..19 4165 100 Minus
ZnT63C-RE 1955 CG17723-RE 656..1488 851..19 4165 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:56:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3312000..3312405 851..446 2030 100 Minus
3L 28110227 3L 3312512..3312749 451..214 1190 100 Minus
3L 28110227 3L 3312814..3313009 214..19 980 100 Minus
Blast to na_te.dros performed on 2015-02-12 15:56:56 has no hits.

BO08290.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:43:14 Download gff for BO08290.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17723-PA 515..1350 16..851 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:36:06 Download gff for BO08290.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17723-PE 515..1350 16..851 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:10:43 Download gff for BO08290.3prime
Subject Subject Range Query Range Percent Splice Strand
ZnT63C-RE 656..1488 19..851 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:28:50 Download gff for BO08290.3prime
Subject Subject Range Query Range Percent Splice Strand
ZnT63C-RE 656..1488 19..851 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:28:50 Download gff for BO08290.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3312000..3312402 449..851 100 -> Minus
3L 3312515..3312749 214..448 100 -> Minus
3L 3312815..3313009 19..213 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:10:43 Download gff for BO08290.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3312815..3313009 19..213 100   Minus
arm_3L 3312515..3312749 214..448 100 -> Minus
arm_3L 3312000..3312402 449..851 100 -> Minus

BO08290.5prime Sequence

849 bp (760 high quality bases) assembled on 2006-01-06

> BO08290.5prime
GAAGTTATCAGTCGACATGGCCAAGTACTCGGGCAAAAAATGCCGGCTGC
TCTCGATGATGTGGCTTACGGCGTTCTTCTTCTTCGTGGAGATCATAGTG
GGCTATGTGACCAATTCGATGGCTCTGGTGGCGGATAGTTTCCACATGCT
GGGCGACATTGCGGCCCTGGTCATATCATTCCTGTCTGTGAAGATGTCAC
CGAAAAAGTGGTCAAAGAACACTTTTGGCTGGGCCAGGGCAGAAGTCTTG
GGTGCTTTGGTCAACGCCGTTTTTCTGGTGGCCTTGTGCTTCAGCATCAC
CATCGAGGCTTGCAAAAGATTCATTGAGGAGGAGCCGATTCACGAGCCTG
AACTGCTTGTCATCGTGGGAGCCTTGGGTCTTCTGGTGAATGTTATTGGA
CTTTGTCTGCTTTACGAGCACGGCGGTCACCATGGACACTCACATGGCGG
CGGACTCACCCGTAACCACAGCCGCCTCACTGAGTTGGCCAACATGGACG
AGGGCGAGGATGAGCAAAACGACTTTGCCTACGAGAAGCAGAAGGAAAAG
GCACCGGTCAAGAAATCCAGCCATGGACACAGCCATGATCCCGGCCAGAT
GAATATGCGCGGCGCCTTCTTGCACGTTTTGAGCGATGCCCTTGGCAGCA
TCATTGTCGTAATCAGTGCTGTGGTGGTGTGGAAGACGGAGTGGAAGTAC
CGGTACTACATGGATCCCGCTCTGTCCATCGTTTTGGTTGTTTTGATCCT
GCACTCCGTGTGGCCGCTGCTGCGCGAGTCCGCTTTAATTCTGCTCCAAA
CGGTGCCCACCCACATCCAGGTGGATGCCATTCAGAAGAGGCTTCTGGA

BO08290.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG17723-PA 1350 CG17723-RA 1..833 17..849 4140 99.8 Plus
CG17723-PB 1350 CG17723-RB 1..833 17..849 4140 99.8 Plus
CG17723-PC 1350 CG17723-RC 1..833 17..849 4140 99.8 Plus
CG17723-PD 1350 CG17723-RD 1..833 17..849 4140 99.8 Plus
CG17723-PE 1350 CG17723-RE 1..833 17..849 4140 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT63C-RG 1959 CG17723-RG 146..978 17..849 4150 99.9 Plus
ZnT63C-RF 2033 CG17723-RF 220..1052 17..849 4150 99.9 Plus
ZnT63C-RE 1955 CG17723-RE 142..974 17..849 4150 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:41:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3311885..3312318 416..849 2170 100 Plus
3L 28110227 3L 3310530..3310706 17..193 885 100 Plus
3L 28110227 3L 3310770..3310896 192..318 620 99.2 Plus
3L 28110227 3L 3311728..3311827 317..416 500 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:41:26 has no hits.

BO08290.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:43:15 Download gff for BO08290.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17723-PA 1..832 17..848 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:36:07 Download gff for BO08290.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17723-PE 1..832 17..848 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:39:39 Download gff for BO08290.5prime
Subject Subject Range Query Range Percent Splice Strand
ZnT63C-RE 142..973 17..848 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:16:31 Download gff for BO08290.5prime
Subject Subject Range Query Range Percent Splice Strand
ZnT63C-RE 142..973 17..848 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:16:31 Download gff for BO08290.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3310530..3310706 17..193 100 -> Plus
3L 3310772..3310896 194..318 99 -> Plus
3L 3311730..3311827 319..416 100 -> Plus
3L 3311886..3312317 417..848 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:39:39 Download gff for BO08290.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3310530..3310706 17..193 100 -> Plus
arm_3L 3310772..3310896 194..318 99 -> Plus
arm_3L 3311730..3311827 319..416 100 -> Plus
arm_3L 3311886..3312317 417..848 100   Plus

BO08290.complete Sequence

1381 bp (1381 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ631139

> BO08290.complete
GAAGTTATCAGTCGACATGGCCAAGTACTCGGGCAAAAAATGCCGGCTGC
TCTCGATGATGTGGCTTACGGCGTTCTTCTTCTTCGTGGAGATCATAGTG
GGCTATGTGACCAATTCGATGGCTCTGGTGGCGGATAGTTTCCACATGCT
GGGCGACATTGCGGCCCTGGTCATATCATTCCTGTCTGTGAAGATGTCAC
CGAAAAAGTGGTCAAAGAACACTTTTGGCTGGGCCAGGGCAGAAGTCTTG
GGTGCTTTGGTCAACGCCGTTTTTCTGGTGGCCTTGTGCTTCAGCATCAC
CATCGAGGCTTGCAAAAGATTCATTGAGGAGGAGCCGATTCACGAGCCTG
AACTGCTTGTCATCGTGGGAGCCTTGGGTCTTCTGGTGAATGTTATTGGA
CTTTGTCTGCTTTACGAGCACGGCGGTCACCATGGACACTCACATGGCGG
CGGACTCACCCGTAACCACAGCCGCCTCACTGAGTTGGCCAACATGGACG
AGGGCGAGGATGAGCAAAACGACTTTGCCTACGAGAAGCAGAAGGAAAAG
GCACCGGTCAAGAAATCCAGCCATGGACACAGCCATGATCCCGGCCAGAT
GAATATGCGCGGCGCCTTCTTGCACGTTTTGAGCGATGCCCTTGGCAGCA
TCATTGTCGTAATCAGTGCTGTGGTGGTGTGGAAGACGGAGTGGAAGTAC
CGGTACTACATGGATCCCGCTCTGTCCATCGTTTTGGTTGTTTTGATCCT
GCACTCCGTGTGGCCGCTGCTGCGCGAGTCCGCTTTAATTCTGCTCCAAA
CGGTGCCCACCCACATCCAGGTGGATGCCATTCAGAAGAGGCTTCTGGAG
AAAGTTGATGGCGTGCTGGCTGTGCACGAGTTCCATGTGTGGCAACTGGC
CGGCGACCGCATCATCGCCTCTGCCCATATTAGGTGCCGTAACCTTTCGG
AGTACATGAAGATTGCCGAAAAGGTGAAGGAGTTCTTCCACAACGAGGGT
ATCCACTCTACCACCATTCAGCCAGAGTTCAGCGAGATCGAAGGCTGCAA
CATGTCCGATGGCACCTCCAGCATCAACATCAGCGGCTCCGACTGCTGCG
CGTTGGATTGTCCTACCACGGAAGAAGGATGTGTCAAGGCCACGTGCTGC
CAAAACAACAACAAATTGAACCAACTGCCCTCACCCACCAACTCGCCGTA
TCTGTGCCGCCAGCGGAATGCCGCCCGACAGGCCGGCGATGTGGAGGCGG
GTTCCCTGCTGGAGGCCACGTCCAGTGGCAACCAGGGAGCCACTGGTGGG
GCCAGCACAGGAGCGCCCGTGGCTGCGATAGGGGCCACGTCAACGCCGAA
GAGCGATTTGGTTGCAAGCTTTCTAGACCAT

BO08290.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:30:19
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT63C-RG 1350 CG17723-PG 1..1347 17..1363 6720 99.9 Plus
ZnT63C-RF 1638 CG17723-PF 1..1347 17..1363 6720 99.9 Plus
ZnT63C-RE 1350 CG17723-PE 1..1347 17..1363 6720 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:30:21
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT63C-RG 1959 CG17723-RG 146..1492 17..1363 6720 99.9 Plus
ZnT63C-RF 2033 CG17723-RF 220..1566 17..1363 6720 99.9 Plus
ZnT63C-RE 1955 CG17723-RE 142..1488 17..1363 6720 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3311885..3312405 416..936 2605 100 Plus
3L 28110227 3L 3312512..3312749 931..1168 1190 100 Plus
3L 28110227 3L 3312814..3313009 1168..1363 980 100 Plus
3L 28110227 3L 3310530..3310706 17..193 885 100 Plus
3L 28110227 3L 3310770..3310896 192..318 620 99.2 Plus
3L 28110227 3L 3311728..3311827 317..416 500 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:30:18 has no hits.

BO08290.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:45 Download gff for BO08290.complete
Subject Subject Range Query Range Percent Splice Strand
CG17723-RC 1..1350 17..1366 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:31:23 Download gff for BO08290.complete
Subject Subject Range Query Range Percent Splice Strand
ZnT63C-RC 375..1721 17..1363 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:01:34 Download gff for BO08290.complete
Subject Subject Range Query Range Percent Splice Strand
ZnT63C-RE 142..1488 17..1365 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:46 Download gff for BO08290.complete
Subject Subject Range Query Range Percent Splice Strand
CG17723-RC 375..1721 17..1363 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:42:51 Download gff for BO08290.complete
Subject Subject Range Query Range Percent Splice Strand
ZnT63C-RE 142..1488 17..1365 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:42:51 Download gff for BO08290.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3310772..3310896 194..318 99 -> Plus
3L 3311730..3311827 319..416 100 -> Plus
3L 3310530..3310706 17..193 100 -> Plus
3L 3311886..3312402 417..933 100 -> Plus
3L 3312515..3312749 934..1168 100 -> Plus
3L 3312815..3313009 1169..1365 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:01:34 Download gff for BO08290.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3310530..3310706 17..193 100 -> Plus
arm_3L 3310772..3310896 194..318 99 -> Plus
arm_3L 3311730..3311827 319..416 100 -> Plus
arm_3L 3311886..3312402 417..933 100 -> Plus
arm_3L 3312515..3312749 934..1168 100 -> Plus
arm_3L 3312815..3313009 1169..1365 98   Plus

BO08290.pep Sequence

Translation from 16 to 1381

> BO08290.pep
MAKYSGKKCRLLSMMWLTAFFFFVEIIVGYVTNSMALVADSFHMLGDIAA
LVISFLSVKMSPKKWSKNTFGWARAEVLGALVNAVFLVALCFSITIEACK
RFIEEEPIHEPELLVIVGALGLLVNVIGLCLLYEHGGHHGHSHGGGLTRN
HSRLTELANMDEGEDEQNDFAYEKQKEKAPVKKSSHGHSHDPGQMNMRGA
FLHVLSDALGSIIVVISAVVVWKTEWKYRYYMDPALSIVLVVLILHSVWP
LLRESALILLQTVPTHIQVDAIQKRLLEKVDGVLAVHEFHVWQLAGDRII
ASAHIRCRNLSEYMKIAEKVKEFFHNEGIHSTTIQPEFSEIEGCNMSDGT
SSINISGSDCCALDCPTTEEGCVKATCCQNNNKLNQLPSPTNSPYLCRQR
NAARQAGDVEAGSLLEATSSGNQGATGGASTGAPVAAIGATSTPKSDLVA
SFLDH

BO08290.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:20:09
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT63C-PG 449 CG17723-PG 1..449 1..449 2342 100 Plus
ZnT63C-PF 545 CG17723-PF 1..449 1..449 2342 100 Plus
ZnT63C-PE 449 CG17723-PE 1..449 1..449 2342 100 Plus
ZnT63C-PD 449 CG17723-PD 1..449 1..449 2342 100 Plus
ZnT63C-PC 449 CG17723-PC 1..449 1..449 2342 100 Plus