Clone Sequence Records
BO08290.3prime Sequence
851 bp (848 high quality bases) assembled on 2006-01-06
> BO08290.3prime
ATGGTCTAGAAAGCTTGCAACCAAATCGCTCTTCGGCGTTGACGTGGCCC
CTATCGCAGCCACGGGCGCTCCTGTGCTGGCCCCACCAGTGGCTCCCTGG
TTGCCACTGGACGTGGCCTCCAGCAGGGAACCCGCCTCCACATCGCCGGC
CTGTCGGGCGGCATTCCGCTGGCGGCACAGATACGGCGAGTTGGTGGGTG
AGGGCAGTTGGTTCAATTTGTTGTTGTTTTGGCAGCACGTGGCCTTGACA
CATCCTTCTTCCGTGGTAGGACAATCCAACGCGCAGCAGTCGGAGCCGCT
GATGTTGATGCTGGAGGTGCCATCGGACATGTTGCAGCCTTCGATCTCGC
TGAACTCTGGCTGAATGGTGGTAGAGTGGATACCCTCGTTGTGGAAGAAC
TCCTTCACCTTTTCGGCAATCTTCATGTACTCCGAAAGGTTACGGCACCT
AATATGGGCAGAGGCGATGATGCGGTCGCCGGCCAGTTGCCACACATGGA
ACTCGTGCACAGCCAGCACGCCATCAACTTTCTCCAGAAGCCTCTTCTGA
ATGGCATCCACCTGGATGTGGGTGGGCACCGTTTGGAGCAGAATTAAAGC
GGACTCGCGCAGCAGCGGCCACACGGAGTGCAGGATCAAAACAACCAAAA
CGATGGACAGAGCGGGATCCATGTAGTACCGGTACTTCCACTCCGTCTTC
CACACCACCACAGCACTGATTACGACAATGATGCTGCCAAGGGCATCGCT
CAAAACGTGCAAGAAGGCGCCGCGCATATTCATCTGGCCGGGATCATGGC
TGTGTCCATGGCTGGATTTCTTGACCGGTGCCTTTTCCTTCTGCTTCTCG
T
BO08290.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17723-PA | 1350 | CG17723-RA | 515..1347 | 851..19 | 4165 | 100 | Minus |
CG17723-PB | 1350 | CG17723-RB | 515..1347 | 851..19 | 4165 | 100 | Minus |
CG17723-PC | 1350 | CG17723-RC | 515..1347 | 851..19 | 4165 | 100 | Minus |
CG17723-PD | 1350 | CG17723-RD | 515..1347 | 851..19 | 4165 | 100 | Minus |
CG17723-PE | 1350 | CG17723-RE | 515..1347 | 851..19 | 4165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:56:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZnT63C-RG | 1959 | CG17723-RG | 660..1492 | 851..19 | 4165 | 100 | Minus |
ZnT63C-RF | 2033 | CG17723-RF | 734..1566 | 851..19 | 4165 | 100 | Minus |
ZnT63C-RE | 1955 | CG17723-RE | 656..1488 | 851..19 | 4165 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:56:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3312000..3312405 | 851..446 | 2030 | 100 | Minus |
3L | 28110227 | 3L | 3312512..3312749 | 451..214 | 1190 | 100 | Minus |
3L | 28110227 | 3L | 3312814..3313009 | 214..19 | 980 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 15:56:56 has no hits.
BO08290.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:43:14 Download gff for
BO08290.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17723-PA | 515..1350 | 16..851 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:36:06 Download gff for
BO08290.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17723-PE | 515..1350 | 16..851 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:10:43 Download gff for
BO08290.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ZnT63C-RE | 656..1488 | 19..851 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:28:50 Download gff for
BO08290.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ZnT63C-RE | 656..1488 | 19..851 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:28:50 Download gff for
BO08290.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3312000..3312402 | 449..851 | 100 | -> | Minus |
3L | 3312515..3312749 | 214..448 | 100 | -> | Minus |
3L | 3312815..3313009 | 19..213 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:10:43 Download gff for
BO08290.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3312815..3313009 | 19..213 | 100 | | Minus |
arm_3L | 3312515..3312749 | 214..448 | 100 | -> | Minus |
arm_3L | 3312000..3312402 | 449..851 | 100 | -> | Minus |
BO08290.5prime Sequence
849 bp (760 high quality bases) assembled on 2006-01-06
> BO08290.5prime
GAAGTTATCAGTCGACATGGCCAAGTACTCGGGCAAAAAATGCCGGCTGC
TCTCGATGATGTGGCTTACGGCGTTCTTCTTCTTCGTGGAGATCATAGTG
GGCTATGTGACCAATTCGATGGCTCTGGTGGCGGATAGTTTCCACATGCT
GGGCGACATTGCGGCCCTGGTCATATCATTCCTGTCTGTGAAGATGTCAC
CGAAAAAGTGGTCAAAGAACACTTTTGGCTGGGCCAGGGCAGAAGTCTTG
GGTGCTTTGGTCAACGCCGTTTTTCTGGTGGCCTTGTGCTTCAGCATCAC
CATCGAGGCTTGCAAAAGATTCATTGAGGAGGAGCCGATTCACGAGCCTG
AACTGCTTGTCATCGTGGGAGCCTTGGGTCTTCTGGTGAATGTTATTGGA
CTTTGTCTGCTTTACGAGCACGGCGGTCACCATGGACACTCACATGGCGG
CGGACTCACCCGTAACCACAGCCGCCTCACTGAGTTGGCCAACATGGACG
AGGGCGAGGATGAGCAAAACGACTTTGCCTACGAGAAGCAGAAGGAAAAG
GCACCGGTCAAGAAATCCAGCCATGGACACAGCCATGATCCCGGCCAGAT
GAATATGCGCGGCGCCTTCTTGCACGTTTTGAGCGATGCCCTTGGCAGCA
TCATTGTCGTAATCAGTGCTGTGGTGGTGTGGAAGACGGAGTGGAAGTAC
CGGTACTACATGGATCCCGCTCTGTCCATCGTTTTGGTTGTTTTGATCCT
GCACTCCGTGTGGCCGCTGCTGCGCGAGTCCGCTTTAATTCTGCTCCAAA
CGGTGCCCACCCACATCCAGGTGGATGCCATTCAGAAGAGGCTTCTGGA
BO08290.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17723-PA | 1350 | CG17723-RA | 1..833 | 17..849 | 4140 | 99.8 | Plus |
CG17723-PB | 1350 | CG17723-RB | 1..833 | 17..849 | 4140 | 99.8 | Plus |
CG17723-PC | 1350 | CG17723-RC | 1..833 | 17..849 | 4140 | 99.8 | Plus |
CG17723-PD | 1350 | CG17723-RD | 1..833 | 17..849 | 4140 | 99.8 | Plus |
CG17723-PE | 1350 | CG17723-RE | 1..833 | 17..849 | 4140 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:41:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZnT63C-RG | 1959 | CG17723-RG | 146..978 | 17..849 | 4150 | 99.9 | Plus |
ZnT63C-RF | 2033 | CG17723-RF | 220..1052 | 17..849 | 4150 | 99.9 | Plus |
ZnT63C-RE | 1955 | CG17723-RE | 142..974 | 17..849 | 4150 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:41:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3311885..3312318 | 416..849 | 2170 | 100 | Plus |
3L | 28110227 | 3L | 3310530..3310706 | 17..193 | 885 | 100 | Plus |
3L | 28110227 | 3L | 3310770..3310896 | 192..318 | 620 | 99.2 | Plus |
3L | 28110227 | 3L | 3311728..3311827 | 317..416 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:41:26 has no hits.
BO08290.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:43:15 Download gff for
BO08290.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17723-PA | 1..832 | 17..848 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:36:07 Download gff for
BO08290.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17723-PE | 1..832 | 17..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:39:39 Download gff for
BO08290.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ZnT63C-RE | 142..973 | 17..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:16:31 Download gff for
BO08290.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ZnT63C-RE | 142..973 | 17..848 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:16:31 Download gff for
BO08290.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3310530..3310706 | 17..193 | 100 | -> | Plus |
3L | 3310772..3310896 | 194..318 | 99 | -> | Plus |
3L | 3311730..3311827 | 319..416 | 100 | -> | Plus |
3L | 3311886..3312317 | 417..848 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:39:39 Download gff for
BO08290.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3310530..3310706 | 17..193 | 100 | -> | Plus |
arm_3L | 3310772..3310896 | 194..318 | 99 | -> | Plus |
arm_3L | 3311730..3311827 | 319..416 | 100 | -> | Plus |
arm_3L | 3311886..3312317 | 417..848 | 100 | | Plus |
BO08290.complete Sequence
1381 bp (1381 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631139
> BO08290.complete
GAAGTTATCAGTCGACATGGCCAAGTACTCGGGCAAAAAATGCCGGCTGC
TCTCGATGATGTGGCTTACGGCGTTCTTCTTCTTCGTGGAGATCATAGTG
GGCTATGTGACCAATTCGATGGCTCTGGTGGCGGATAGTTTCCACATGCT
GGGCGACATTGCGGCCCTGGTCATATCATTCCTGTCTGTGAAGATGTCAC
CGAAAAAGTGGTCAAAGAACACTTTTGGCTGGGCCAGGGCAGAAGTCTTG
GGTGCTTTGGTCAACGCCGTTTTTCTGGTGGCCTTGTGCTTCAGCATCAC
CATCGAGGCTTGCAAAAGATTCATTGAGGAGGAGCCGATTCACGAGCCTG
AACTGCTTGTCATCGTGGGAGCCTTGGGTCTTCTGGTGAATGTTATTGGA
CTTTGTCTGCTTTACGAGCACGGCGGTCACCATGGACACTCACATGGCGG
CGGACTCACCCGTAACCACAGCCGCCTCACTGAGTTGGCCAACATGGACG
AGGGCGAGGATGAGCAAAACGACTTTGCCTACGAGAAGCAGAAGGAAAAG
GCACCGGTCAAGAAATCCAGCCATGGACACAGCCATGATCCCGGCCAGAT
GAATATGCGCGGCGCCTTCTTGCACGTTTTGAGCGATGCCCTTGGCAGCA
TCATTGTCGTAATCAGTGCTGTGGTGGTGTGGAAGACGGAGTGGAAGTAC
CGGTACTACATGGATCCCGCTCTGTCCATCGTTTTGGTTGTTTTGATCCT
GCACTCCGTGTGGCCGCTGCTGCGCGAGTCCGCTTTAATTCTGCTCCAAA
CGGTGCCCACCCACATCCAGGTGGATGCCATTCAGAAGAGGCTTCTGGAG
AAAGTTGATGGCGTGCTGGCTGTGCACGAGTTCCATGTGTGGCAACTGGC
CGGCGACCGCATCATCGCCTCTGCCCATATTAGGTGCCGTAACCTTTCGG
AGTACATGAAGATTGCCGAAAAGGTGAAGGAGTTCTTCCACAACGAGGGT
ATCCACTCTACCACCATTCAGCCAGAGTTCAGCGAGATCGAAGGCTGCAA
CATGTCCGATGGCACCTCCAGCATCAACATCAGCGGCTCCGACTGCTGCG
CGTTGGATTGTCCTACCACGGAAGAAGGATGTGTCAAGGCCACGTGCTGC
CAAAACAACAACAAATTGAACCAACTGCCCTCACCCACCAACTCGCCGTA
TCTGTGCCGCCAGCGGAATGCCGCCCGACAGGCCGGCGATGTGGAGGCGG
GTTCCCTGCTGGAGGCCACGTCCAGTGGCAACCAGGGAGCCACTGGTGGG
GCCAGCACAGGAGCGCCCGTGGCTGCGATAGGGGCCACGTCAACGCCGAA
GAGCGATTTGGTTGCAAGCTTTCTAGACCAT
BO08290.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:30:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZnT63C-RG | 1350 | CG17723-PG | 1..1347 | 17..1363 | 6720 | 99.9 | Plus |
ZnT63C-RF | 1638 | CG17723-PF | 1..1347 | 17..1363 | 6720 | 99.9 | Plus |
ZnT63C-RE | 1350 | CG17723-PE | 1..1347 | 17..1363 | 6720 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:30:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZnT63C-RG | 1959 | CG17723-RG | 146..1492 | 17..1363 | 6720 | 99.9 | Plus |
ZnT63C-RF | 2033 | CG17723-RF | 220..1566 | 17..1363 | 6720 | 99.9 | Plus |
ZnT63C-RE | 1955 | CG17723-RE | 142..1488 | 17..1363 | 6720 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:30:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3311885..3312405 | 416..936 | 2605 | 100 | Plus |
3L | 28110227 | 3L | 3312512..3312749 | 931..1168 | 1190 | 100 | Plus |
3L | 28110227 | 3L | 3312814..3313009 | 1168..1363 | 980 | 100 | Plus |
3L | 28110227 | 3L | 3310530..3310706 | 17..193 | 885 | 100 | Plus |
3L | 28110227 | 3L | 3310770..3310896 | 192..318 | 620 | 99.2 | Plus |
3L | 28110227 | 3L | 3311728..3311827 | 317..416 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:30:18 has no hits.
BO08290.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:45 Download gff for
BO08290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17723-RC | 1..1350 | 17..1366 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:31:23 Download gff for
BO08290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ZnT63C-RC | 375..1721 | 17..1363 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:01:34 Download gff for
BO08290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ZnT63C-RE | 142..1488 | 17..1365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:46 Download gff for
BO08290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17723-RC | 375..1721 | 17..1363 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:42:51 Download gff for
BO08290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ZnT63C-RE | 142..1488 | 17..1365 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:42:51 Download gff for
BO08290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3310772..3310896 | 194..318 | 99 | -> | Plus |
3L | 3311730..3311827 | 319..416 | 100 | -> | Plus |
3L | 3310530..3310706 | 17..193 | 100 | -> | Plus |
3L | 3311886..3312402 | 417..933 | 100 | -> | Plus |
3L | 3312515..3312749 | 934..1168 | 100 | -> | Plus |
3L | 3312815..3313009 | 1169..1365 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:01:34 Download gff for
BO08290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3310530..3310706 | 17..193 | 100 | -> | Plus |
arm_3L | 3310772..3310896 | 194..318 | 99 | -> | Plus |
arm_3L | 3311730..3311827 | 319..416 | 100 | -> | Plus |
arm_3L | 3311886..3312402 | 417..933 | 100 | -> | Plus |
arm_3L | 3312515..3312749 | 934..1168 | 100 | -> | Plus |
arm_3L | 3312815..3313009 | 1169..1365 | 98 | | Plus |
BO08290.pep Sequence
Translation from 16 to 1381
> BO08290.pep
MAKYSGKKCRLLSMMWLTAFFFFVEIIVGYVTNSMALVADSFHMLGDIAA
LVISFLSVKMSPKKWSKNTFGWARAEVLGALVNAVFLVALCFSITIEACK
RFIEEEPIHEPELLVIVGALGLLVNVIGLCLLYEHGGHHGHSHGGGLTRN
HSRLTELANMDEGEDEQNDFAYEKQKEKAPVKKSSHGHSHDPGQMNMRGA
FLHVLSDALGSIIVVISAVVVWKTEWKYRYYMDPALSIVLVVLILHSVWP
LLRESALILLQTVPTHIQVDAIQKRLLEKVDGVLAVHEFHVWQLAGDRII
ASAHIRCRNLSEYMKIAEKVKEFFHNEGIHSTTIQPEFSEIEGCNMSDGT
SSINISGSDCCALDCPTTEEGCVKATCCQNNNKLNQLPSPTNSPYLCRQR
NAARQAGDVEAGSLLEATSSGNQGATGGASTGAPVAAIGATSTPKSDLVA
SFLDH
BO08290.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:20:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZnT63C-PG | 449 | CG17723-PG | 1..449 | 1..449 | 2342 | 100 | Plus |
ZnT63C-PF | 545 | CG17723-PF | 1..449 | 1..449 | 2342 | 100 | Plus |
ZnT63C-PE | 449 | CG17723-PE | 1..449 | 1..449 | 2342 | 100 | Plus |
ZnT63C-PD | 449 | CG17723-PD | 1..449 | 1..449 | 2342 | 100 | Plus |
ZnT63C-PC | 449 | CG17723-PC | 1..449 | 1..449 | 2342 | 100 | Plus |