Clone BO08295 Report

Search the DGRC for BO08295

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:82
Well:95
Vector:pDNR-Dual
Associated Gene/TranscriptCG3004-RA
Protein status:BO08295.pep: validated full length
Sequenced Size:973

Clone Sequence Records

BO08295.3prime Sequence

894 bp (850 high quality bases) assembled on 2006-01-06

> BO08295.3prime
ATGGTCTAGAAAGCTTGCTTTGCCCACGATCTCGTCCTTGAAGGACAGGG
CAGTGATGGCCTTGGTGTGACCAGTATAATCCCTAATCGAACTCTTTGTC
TGCAGCTTCCACAGTCGTGCAATGCCGTCGGATGAGGCTGTGAACAGCCA
TTTAGAATCGGCGCTAAAGGCGGCATCCCACACCCAATAGTTCTCGATGC
ACAGCTCGCGCCATTTGCTAAAGTCATCCGTCTTCCAAATGCACACAGTG
CCATCGCCGGATGTCGTCAGCAGTAGCCTGGAATCGGGACTGAATTTGCA
GCGCAGTATGTAGCGAGAGTGGGCCGGAATTTTCCTGTTCGGCCGCAGCG
TGCTCATCTTCTGATCCTGACTGGTCAGCGACCAGATGTAGCAGTTGCCC
TTGTTATTGGCCGCCGCCAAGTATCTGCCATCCGGCGAGATGGCAACATC
CTGAATGGATGCGTCCACCTCGGGCACGATGCGTTCGTGCCGCTCCGACT
TGACGTCCCACAGAAAGACGCTGCCATTTTGTGAGCCCATGGCGATCTCC
ACCTGGTTGGGATGCAAACAGGCGGCATTTACCGGCGCCTCACAATCAAA
GATCCGGGAACAGTGTGGCGGTGCGGCAATCATGTCCCAGATCCGCACGT
GATGATCCTCGCCGGCGGTGAACATCCAATTGCCGTCCTCTTGGAAGCCA
AGTCGCGTCACATTCTTTTGCACGCCATCGAAATTGATCACCGGTGCGGT
GCAGTTGGACTCCAGGTCGTACAGCCGGATGCACTGGTATCCGCACGCCG
CCAGTCGCGTCTTATCCGGTGTCCTGTCTAGCGCATTCACTTGCGAGGTC
TCCACGAATCTCATCGTCTTAATGCAGTTGCCCGTGTGCGCCCT

BO08295.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG3004-PA 942 CG3004-RA 66..939 892..19 4370 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
Lst8-RA 1760 CG3004-RA 160..1033 892..19 4370 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:38:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9604881..9605706 19..844 4130 100 Plus
X 23542271 X 9605762..9605810 844..892 245 100 Plus
Blast to na_te.dros performed on 2015-02-04 20:38:47 has no hits.

BO08295.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:43:22 Download gff for BO08295.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3004-PA 65..942 18..894 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:36:16 Download gff for BO08295.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3004-PA 65..942 18..894 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:28:22 Download gff for BO08295.3prime
Subject Subject Range Query Range Percent Splice Strand
Lst8-RA 159..1037 13..894 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:53:02 Download gff for BO08295.3prime
Subject Subject Range Query Range Percent Splice Strand
Lst8-RA 159..1037 13..894 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:53:02 Download gff for BO08295.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9604877..9605705 13..843 99 <- Plus
X 9605762..9605811 844..894 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:28:22 Download gff for BO08295.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9498910..9499738 13..843 99 <- Plus
arm_X 9499795..9499844 844..894 98   Plus

BO08295.5prime Sequence

819 bp (818 high quality bases) assembled on 2006-01-06

> BO08295.5prime
GAAGTTATCAGTCGACATGGGGGACCAACAGCAGCTGATCCTGGCCACCG
GTGGTTATGACCACACCATTAAGGTGTGGCAGGCGCACACGGGCAACTGC
ATTAAGACGATGAGATTCGTGGAGACCTCGCAAGTGAATGCGCTAGACAG
GACACCGGATAAGACGCGACTGGCGGCGTGCGGATACCAGTGCATCCGGC
TGTACGACCTGGAGTCCAACTGCACCGCACCGGTGATCAATTTCGATGGC
GTGCAAAAGAATGTGACGCGACTTGGCTTCCAAGAGGACGGCAATTGGAT
GTTCACCGCCGGCGAGGATCATCACGTGCGGATCTGGGACATGATTGCCG
CACCGCCACACTGTTCCCGGATCTTTGATTGTGAGGCGCCGGTAAATGCC
GCCTGTTTGCATCCCAACCAGGTGGAGATCGCCATGGGCTCACAAAATGG
CAGCGTCTTTCTGTGGGACGTCAAGTCGGAGCGGCACGAACGCATCGTGC
CCGAGGTGGACGCATCCATTCAGGATGTTGCCATCTCGCCGGATGGCAGA
TACTTGGCGGCGGCCAATAACAAGGGCAACTGCTACATCTGGTCGCTGAC
CAGTCAGGATCAGAAGATGAGCACGCTGCGGCCGAACAGGAAAATTCCGG
CCCACTCTCGCTACATACTGCGCTGCANATTCAGTCCCGATTCCAGGCTA
CTGCTGACGACATCCGGCGATGGCACTGTGTGCATTTGGAAGACGGATGA
CTTTAGCAAATGGCGCGAGCTGTGCATCGAGAACTATTGGGTGTGGGATG
CCGCCTTTAGCGCCGATTC

BO08295.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG3004-PA 942 CG3004-RA 1..803 17..819 3996 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:11:08
Subject Length Description Subject Range Query Range Score Percent Strand
Lst8-RA 1760 CG3004-RA 95..897 17..819 4004 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:11:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9605017..9605706 819..130 3439 99.9 Minus
X 23542271 X 9605762..9605875 130..17 570 100 Minus
Blast to na_te.dros performed 2015-02-11 22:11:07
Subject Length Description Subject Range Query Range Score Percent Strand
G5A 2841 G5A G5A 2841bp 2026..2075 32..81 124 72 Plus

BO08295.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:43:22 Download gff for BO08295.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3004-PA 1..803 17..819 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:36:18 Download gff for BO08295.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3004-PA 1..803 17..819 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:48:13 Download gff for BO08295.5prime
Subject Subject Range Query Range Percent Splice Strand
Lst8-RA 91..897 9..819 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:52:35 Download gff for BO08295.5prime
Subject Subject Range Query Range Percent Splice Strand
Lst8-RA 91..897 9..819 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:52:35 Download gff for BO08295.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9605017..9605705 131..819 99 <- Minus
X 9605762..9605879 9..130 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:48:13 Download gff for BO08295.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9499050..9499738 131..819 99 <- Minus
arm_X 9499795..9499912 9..130 96   Minus

BO08295.complete Sequence

973 bp (973 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ631140

> BO08295.complete
GAAGTTATCAGTCGACATGGGGGACCAACAGCAGCTGATCCTGGCCACCG
GTGGTTATGACCACACCATTAAGGTGTGGCAGGCGCACACGGGCAACTGC
ATTAAGACGATGAGATTCGTGGAGACCTCGCAAGTGAATGCGCTAGACAG
GACACCGGATAAGACGCGACTGGCGGCGTGCGGATACCAGTGCATCCGGC
TGTACGACCTGGAGTCCAACTGCACCGCACCGGTGATCAATTTCGATGGC
GTGCAAAAGAATGTGACGCGACTTGGCTTCCAAGAGGACGGCAATTGGAT
GTTCACCGCCGGCGAGGATCATCACGTGCGGATCTGGGACATGATTGCCG
CACCGCCACACTGTTCCCGGATCTTTGATTGTGAGGCGCCGGTAAATGCC
GCCTGTTTGCATCCCAACCAGGTGGAGATCGCCATGGGCTCACAAAATGG
CAGCGTCTTTCTGTGGGACGTCAAGTCGGAGCGGCACGAACGCATCGTGC
CCGAGGTGGACGCATCCATTCAGGATGTTGCCATCTCGCCGGATGGCAGA
TACTTGGCGGCGGCCAATAACAAGGGCAACTGCTACATCTGGTCGCTGAC
CAGTCAGGATCAGAAGATGAGCACGCTGCGGCCGAACAGGAAAATTCCGG
CCCACTCTCGCTACATACTGCGCTGCAAATTCAGTCCCGATTCCAGGCTA
CTGCTGACGACATCCGGCGATGGCACTGTGTGCATTTGGAAGACGGATGA
CTTTAGCAAATGGCGCGAGCTGTGCATCGAGAACTATTGGGTGTGGGATG
CCGCCTTTAGCGCCGATTCTAAATGGCTGTTCACAGCCTCATCCGACGGC
ATTGCACGACTGTGGAAGCTGCAGACAAAGAGTTCGATTAGGGATTATAC
TGGTCACACCAAGGCCATCACTGCCCTGTCCTTCAAGGACGAGATCGTGG
GCAAAGCAAGCTTTCTAGACCAT

BO08295.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:42:51
Subject Length Description Subject Range Query Range Score Percent Strand
Lst8-RA 942 CG3004-PA 1..939 17..955 4695 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:42:53
Subject Length Description Subject Range Query Range Score Percent Strand
Lst8-RA 1760 CG3004-RA 95..1033 17..955 4695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:42:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9604881..9605706 955..130 4130 100 Minus
X 23542271 X 9605762..9605875 130..17 570 100 Minus
Blast to na_te.dros performed 2014-11-27 13:42:50
Subject Length Description Subject Range Query Range Score Percent Strand
G5A 2841 G5A G5A 2841bp 2026..2075 32..81 124 72 Plus

BO08295.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:31 Download gff for BO08295.complete
Subject Subject Range Query Range Percent Splice Strand
CG3004-RA 1..942 17..956 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:32:37 Download gff for BO08295.complete
Subject Subject Range Query Range Percent Splice Strand
CG3004-RA 88..1034 9..961 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:32:20 Download gff for BO08295.complete
Subject Subject Range Query Range Percent Splice Strand
Lst8-RA 95..1033 17..957 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:31 Download gff for BO08295.complete
Subject Subject Range Query Range Percent Splice Strand
CG3004-RA 88..1034 9..961 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:51 Download gff for BO08295.complete
Subject Subject Range Query Range Percent Splice Strand
Lst8-RA 95..1033 17..957 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:51 Download gff for BO08295.complete
Subject Subject Range Query Range Percent Splice Strand
X 9604877..9605705 131..957 99 <- Minus
X 9605762..9605875 17..130 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:32:20 Download gff for BO08295.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9498910..9499738 131..957 99 <- Minus
arm_X 9499795..9499908 17..130 100   Minus

BO08295.pep Sequence

Translation from 16 to 973

> BO08295.pep
MGDQQQLILATGGYDHTIKVWQAHTGNCIKTMRFVETSQVNALDRTPDKT
RLAACGYQCIRLYDLESNCTAPVINFDGVQKNVTRLGFQEDGNWMFTAGE
DHHVRIWDMIAAPPHCSRIFDCEAPVNAACLHPNQVEIAMGSQNGSVFLW
DVKSERHERIVPEVDASIQDVAISPDGRYLAAANNKGNCYIWSLTSQDQK
MSTLRPNRKIPAHSRYILRCKFSPDSRLLLTTSGDGTVCIWKTDDFSKWR
ELCIENYWVWDAAFSADSKWLFTASSDGIARLWKLQTKSSIRDYTGHTKA
ITALSFKDEIVGKASFLDH

BO08295.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:49
Subject Length Description Subject Range Query Range Score Percent Strand
Lst8-PA 313 CG3004-PA 1..313 1..313 1699 100 Plus
CG7568-PD 467 CG7568-PD 197..467 9..284 211 25.2 Plus
CG7568-PE 482 CG7568-PE 197..467 9..284 211 25.2 Plus
U4-U6-60K-PA 553 CG6322-PA 319..552 3..244 200 25.2 Plus
wds-PB 361 CG17437-PB 112..347 78..315 196 22.8 Plus