Clone Sequence Records
BO08295.3prime Sequence
894 bp (850 high quality bases) assembled on 2006-01-06
> BO08295.3prime
ATGGTCTAGAAAGCTTGCTTTGCCCACGATCTCGTCCTTGAAGGACAGGG
CAGTGATGGCCTTGGTGTGACCAGTATAATCCCTAATCGAACTCTTTGTC
TGCAGCTTCCACAGTCGTGCAATGCCGTCGGATGAGGCTGTGAACAGCCA
TTTAGAATCGGCGCTAAAGGCGGCATCCCACACCCAATAGTTCTCGATGC
ACAGCTCGCGCCATTTGCTAAAGTCATCCGTCTTCCAAATGCACACAGTG
CCATCGCCGGATGTCGTCAGCAGTAGCCTGGAATCGGGACTGAATTTGCA
GCGCAGTATGTAGCGAGAGTGGGCCGGAATTTTCCTGTTCGGCCGCAGCG
TGCTCATCTTCTGATCCTGACTGGTCAGCGACCAGATGTAGCAGTTGCCC
TTGTTATTGGCCGCCGCCAAGTATCTGCCATCCGGCGAGATGGCAACATC
CTGAATGGATGCGTCCACCTCGGGCACGATGCGTTCGTGCCGCTCCGACT
TGACGTCCCACAGAAAGACGCTGCCATTTTGTGAGCCCATGGCGATCTCC
ACCTGGTTGGGATGCAAACAGGCGGCATTTACCGGCGCCTCACAATCAAA
GATCCGGGAACAGTGTGGCGGTGCGGCAATCATGTCCCAGATCCGCACGT
GATGATCCTCGCCGGCGGTGAACATCCAATTGCCGTCCTCTTGGAAGCCA
AGTCGCGTCACATTCTTTTGCACGCCATCGAAATTGATCACCGGTGCGGT
GCAGTTGGACTCCAGGTCGTACAGCCGGATGCACTGGTATCCGCACGCCG
CCAGTCGCGTCTTATCCGGTGTCCTGTCTAGCGCATTCACTTGCGAGGTC
TCCACGAATCTCATCGTCTTAATGCAGTTGCCCGTGTGCGCCCT
BO08295.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3004-PA | 942 | CG3004-RA | 66..939 | 892..19 | 4370 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:38:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lst8-RA | 1760 | CG3004-RA | 160..1033 | 892..19 | 4370 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:38:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9604881..9605706 | 19..844 | 4130 | 100 | Plus |
X | 23542271 | X | 9605762..9605810 | 844..892 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:38:47 has no hits.
BO08295.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:43:22 Download gff for
BO08295.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3004-PA | 65..942 | 18..894 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:36:16 Download gff for
BO08295.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3004-PA | 65..942 | 18..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:28:22 Download gff for
BO08295.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lst8-RA | 159..1037 | 13..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:53:02 Download gff for
BO08295.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lst8-RA | 159..1037 | 13..894 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:53:02 Download gff for
BO08295.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9604877..9605705 | 13..843 | 99 | <- | Plus |
X | 9605762..9605811 | 844..894 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:28:22 Download gff for
BO08295.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9498910..9499738 | 13..843 | 99 | <- | Plus |
arm_X | 9499795..9499844 | 844..894 | 98 | | Plus |
BO08295.5prime Sequence
819 bp (818 high quality bases) assembled on 2006-01-06
> BO08295.5prime
GAAGTTATCAGTCGACATGGGGGACCAACAGCAGCTGATCCTGGCCACCG
GTGGTTATGACCACACCATTAAGGTGTGGCAGGCGCACACGGGCAACTGC
ATTAAGACGATGAGATTCGTGGAGACCTCGCAAGTGAATGCGCTAGACAG
GACACCGGATAAGACGCGACTGGCGGCGTGCGGATACCAGTGCATCCGGC
TGTACGACCTGGAGTCCAACTGCACCGCACCGGTGATCAATTTCGATGGC
GTGCAAAAGAATGTGACGCGACTTGGCTTCCAAGAGGACGGCAATTGGAT
GTTCACCGCCGGCGAGGATCATCACGTGCGGATCTGGGACATGATTGCCG
CACCGCCACACTGTTCCCGGATCTTTGATTGTGAGGCGCCGGTAAATGCC
GCCTGTTTGCATCCCAACCAGGTGGAGATCGCCATGGGCTCACAAAATGG
CAGCGTCTTTCTGTGGGACGTCAAGTCGGAGCGGCACGAACGCATCGTGC
CCGAGGTGGACGCATCCATTCAGGATGTTGCCATCTCGCCGGATGGCAGA
TACTTGGCGGCGGCCAATAACAAGGGCAACTGCTACATCTGGTCGCTGAC
CAGTCAGGATCAGAAGATGAGCACGCTGCGGCCGAACAGGAAAATTCCGG
CCCACTCTCGCTACATACTGCGCTGCANATTCAGTCCCGATTCCAGGCTA
CTGCTGACGACATCCGGCGATGGCACTGTGTGCATTTGGAAGACGGATGA
CTTTAGCAAATGGCGCGAGCTGTGCATCGAGAACTATTGGGTGTGGGATG
CCGCCTTTAGCGCCGATTC
BO08295.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3004-PA | 942 | CG3004-RA | 1..803 | 17..819 | 3996 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:11:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lst8-RA | 1760 | CG3004-RA | 95..897 | 17..819 | 4004 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:11:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9605017..9605706 | 819..130 | 3439 | 99.9 | Minus |
X | 23542271 | X | 9605762..9605875 | 130..17 | 570 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 22:11:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G5A | 2841 | G5A G5A 2841bp | 2026..2075 | 32..81 | 124 | 72 | Plus |
BO08295.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:43:22 Download gff for
BO08295.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3004-PA | 1..803 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:36:18 Download gff for
BO08295.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3004-PA | 1..803 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:48:13 Download gff for
BO08295.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lst8-RA | 91..897 | 9..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:52:35 Download gff for
BO08295.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lst8-RA | 91..897 | 9..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:52:35 Download gff for
BO08295.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9605017..9605705 | 131..819 | 99 | <- | Minus |
X | 9605762..9605879 | 9..130 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:48:13 Download gff for
BO08295.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9499050..9499738 | 131..819 | 99 | <- | Minus |
arm_X | 9499795..9499912 | 9..130 | 96 | | Minus |
BO08295.complete Sequence
973 bp (973 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631140
> BO08295.complete
GAAGTTATCAGTCGACATGGGGGACCAACAGCAGCTGATCCTGGCCACCG
GTGGTTATGACCACACCATTAAGGTGTGGCAGGCGCACACGGGCAACTGC
ATTAAGACGATGAGATTCGTGGAGACCTCGCAAGTGAATGCGCTAGACAG
GACACCGGATAAGACGCGACTGGCGGCGTGCGGATACCAGTGCATCCGGC
TGTACGACCTGGAGTCCAACTGCACCGCACCGGTGATCAATTTCGATGGC
GTGCAAAAGAATGTGACGCGACTTGGCTTCCAAGAGGACGGCAATTGGAT
GTTCACCGCCGGCGAGGATCATCACGTGCGGATCTGGGACATGATTGCCG
CACCGCCACACTGTTCCCGGATCTTTGATTGTGAGGCGCCGGTAAATGCC
GCCTGTTTGCATCCCAACCAGGTGGAGATCGCCATGGGCTCACAAAATGG
CAGCGTCTTTCTGTGGGACGTCAAGTCGGAGCGGCACGAACGCATCGTGC
CCGAGGTGGACGCATCCATTCAGGATGTTGCCATCTCGCCGGATGGCAGA
TACTTGGCGGCGGCCAATAACAAGGGCAACTGCTACATCTGGTCGCTGAC
CAGTCAGGATCAGAAGATGAGCACGCTGCGGCCGAACAGGAAAATTCCGG
CCCACTCTCGCTACATACTGCGCTGCAAATTCAGTCCCGATTCCAGGCTA
CTGCTGACGACATCCGGCGATGGCACTGTGTGCATTTGGAAGACGGATGA
CTTTAGCAAATGGCGCGAGCTGTGCATCGAGAACTATTGGGTGTGGGATG
CCGCCTTTAGCGCCGATTCTAAATGGCTGTTCACAGCCTCATCCGACGGC
ATTGCACGACTGTGGAAGCTGCAGACAAAGAGTTCGATTAGGGATTATAC
TGGTCACACCAAGGCCATCACTGCCCTGTCCTTCAAGGACGAGATCGTGG
GCAAAGCAAGCTTTCTAGACCAT
BO08295.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:42:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lst8-RA | 942 | CG3004-PA | 1..939 | 17..955 | 4695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:42:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lst8-RA | 1760 | CG3004-RA | 95..1033 | 17..955 | 4695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:42:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9604881..9605706 | 955..130 | 4130 | 100 | Minus |
X | 23542271 | X | 9605762..9605875 | 130..17 | 570 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 13:42:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G5A | 2841 | G5A G5A 2841bp | 2026..2075 | 32..81 | 124 | 72 | Plus |
BO08295.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:31 Download gff for
BO08295.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3004-RA | 1..942 | 17..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:32:37 Download gff for
BO08295.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3004-RA | 88..1034 | 9..961 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:32:20 Download gff for
BO08295.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lst8-RA | 95..1033 | 17..957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:31 Download gff for
BO08295.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3004-RA | 88..1034 | 9..961 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:51 Download gff for
BO08295.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lst8-RA | 95..1033 | 17..957 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:51 Download gff for
BO08295.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9604877..9605705 | 131..957 | 99 | <- | Minus |
X | 9605762..9605875 | 17..130 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:32:20 Download gff for
BO08295.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9498910..9499738 | 131..957 | 99 | <- | Minus |
arm_X | 9499795..9499908 | 17..130 | 100 | | Minus |
BO08295.pep Sequence
Translation from 16 to 973
> BO08295.pep
MGDQQQLILATGGYDHTIKVWQAHTGNCIKTMRFVETSQVNALDRTPDKT
RLAACGYQCIRLYDLESNCTAPVINFDGVQKNVTRLGFQEDGNWMFTAGE
DHHVRIWDMIAAPPHCSRIFDCEAPVNAACLHPNQVEIAMGSQNGSVFLW
DVKSERHERIVPEVDASIQDVAISPDGRYLAAANNKGNCYIWSLTSQDQK
MSTLRPNRKIPAHSRYILRCKFSPDSRLLLTTSGDGTVCIWKTDDFSKWR
ELCIENYWVWDAAFSADSKWLFTASSDGIARLWKLQTKSSIRDYTGHTKA
ITALSFKDEIVGKASFLDH
BO08295.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lst8-PA | 313 | CG3004-PA | 1..313 | 1..313 | 1699 | 100 | Plus |
CG7568-PD | 467 | CG7568-PD | 197..467 | 9..284 | 211 | 25.2 | Plus |
CG7568-PE | 482 | CG7568-PE | 197..467 | 9..284 | 211 | 25.2 | Plus |
U4-U6-60K-PA | 553 | CG6322-PA | 319..552 | 3..244 | 200 | 25.2 | Plus |
wds-PB | 361 | CG17437-PB | 112..347 | 78..315 | 196 | 22.8 | Plus |