Clone Sequence Records
BO08304.3prime Sequence
947 bp (891 high quality bases) assembled on 2006-01-06
> BO08304.3prime
ATGGTCTAGAAAGCTTGCGGTCTGCTCGGCCACACTGCGTCCGCCGCTCA
GTTTTAAATCGAAGGCTTGCGGATTGGCTAAGGGATCCAAGTCGGCGAAA
AGATCCAGCCAGGGATTGTTGGTGGTCTGCGATTTGCTGGGAACCGGGGT
GGCGCCACCTGCACTTGCCTTCGAGTCCGTGGCTACTTGGCTCGGTATGG
GTTGCTGATTCTGCTGGCTAAACAAGCGGGACCATAGCTTGTTAGTGCTA
TTTTGGGCAGGTATATCTTCATCCAGCGGCGCATCTATTAGAGGACTGTC
CTCCAGCTGCTTGGAAAGCTCAATAAGCAAGGATTCATTGTCGCCGCAGG
CATTGGGAGGTGCACTTGGTTTGTCCTCTTCGGACTCCTTGATTTCCGGC
TGGGTTTCCAGCTTGTCCTGGTACTCGTTAGCAAAGAATAACGACTGGTC
CTTATCCACGGCTTCGATTGGCGGCACTTCCTCTGTGGATCCTTCATTTT
GAGACAGTTCCTTTAGCACACAGAAGTCGTACTTGGGCTTTATAATCAAG
GCCTTAGATATGGTCTGGAATGTGGAGGCGGCCTTCTGGGCAAAGTTCTT
CAACTCGGTAACGTAGGCCACCAGAGCATGGGAGTACATGTTGCATCGGG
CAGCTGCTAGTAAATCAATCTTCTGAATGGAATCCATTGAGTAACCATCG
AAATTATGCTTGGCCACCCGCACGTGGGCCTGTGCCGTGCGAAACTTGTC
CAGACCCTTGCCCGTATCGGGATCCAGTTCCTGGCTGGCGGACTTCATCC
AGGAGAGAGCGGCGCGGTATTCCGTGCGCTCCTTCTCCATCGTCTGGAGG
GTCTGCTCCGTGTCCTTTATCGCCCGGCAGCGGAACACATCGACTTCGTG
CTGGAGCCGCANGAGCGGCACCCGCACGCACATCCTCTGTTTGTCAG
BO08304.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10566-PA | 1236 | CG10566-RA | 311..1233 | 941..19 | 4596 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:57:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10566-RB | 1462 | CG10566-RB | 389..1311 | 941..19 | 4604 | 99.9 | Minus |
CG10566-RA | 1735 | CG10566-RA | 662..1584 | 941..19 | 4604 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 14:57:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21132749..21133159 | 429..19 | 2055 | 100 | Minus |
3L | 28110227 | 3L | 21132107..21132378 | 941..670 | 1349 | 99.6 | Minus |
3L | 28110227 | 3L | 21132446..21132687 | 671..430 | 1210 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 14:57:09 has no hits.
BO08304.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:43:27 Download gff for
BO08304.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10566-PA | 305..1236 | 16..947 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:36:25 Download gff for
BO08304.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10566-PA | 305..1236 | 16..947 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:14:42 Download gff for
BO08304.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10566-RA | 656..1589 | 13..947 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:41:37 Download gff for
BO08304.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10566-RA | 656..1589 | 13..947 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:41:37 Download gff for
BO08304.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21132101..21132378 | 670..947 | 98 | -> | Minus |
3L | 21132448..21132687 | 430..669 | 100 | -> | Minus |
3L | 21132749..21133164 | 13..429 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:14:42 Download gff for
BO08304.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21125201..21125478 | 670..947 | 98 | -> | Minus |
arm_3L | 21125548..21125787 | 430..669 | 100 | -> | Minus |
arm_3L | 21125849..21126264 | 13..429 | 99 | | Minus |
BO08304.5prime Sequence
885 bp (858 high quality bases) assembled on 2006-01-06
> BO08304.5prime
GAAGTTATCAGTCGACATGCTCAAGTCGGAGGTTCAGCACCAGTTCTGGA
TTACCAAAAAGGTGGTGCAGCGCAAGCTCGGAACGAAGGAGGACAAGCAC
ATAATATCCTCGGACGCGGAGCTGGATTCCAAGATCGAGGTGTTCAAATC
GATATCGGACACCAGCTTGAACCTGTGCAAAATCATTGACCAATACCAGG
AGCGCCTATGCATCCTGTCGCAGGAGGAGTGTGTGTTCGGCAGGTTCCTC
AAGGAGGCGGGAAAGCGGAGCAGAACCACGGGCGGTAGTATCGCCCACAC
GGCCAAGGCCGTATCCTTCGCTGGACAACAGAGGATGTGCGTGCGGGTGC
CGCTCCTGCGGCTCCAGCACGAAGTCGATGTGTTCCGCTGCCGGGCGATA
AAGGACACGGAGCAGACCCTCCAGACGATGGAGAAGGAGCGCACGGAATA
CCGCGCCGCTCTCTCCTGGATGAAGTCCGCCAGCCAGGAACTGGATCCCG
ATACGGGCAAGGGTCTGGACAAGTTTCGCACGGCACAGGCCCACGTGCGG
GTGGCCAAGCATAATTTCGATGGTTACTCAATGGATTCCATTCAGAAGAT
TGATTTACTAGCAGCTGCCCGATGCAACATGTACTCCCATGCTCTGGTGG
CCTACGTTACCGAGTTGAAGAACTTTGCCCAGAAGGCCGCCTCCACATTC
CAGACCATATCTAAGGCCTTGATTATAAAGCCCAAGTACGACTTCTGTGT
GCTAAAGGAACTGTCTCAAAATGAAGGATCCACAGAGGAAGTGCCGCCAA
TCGAAGCCGTGGATAAGGACCAGTCGTTATTCTTTGCTAACGAGTACCAG
GACAAGCTGGAAACCCAGCCGGAAATCAAGGAGTC
BO08304.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10566-PA | 1236 | CG10566-RA | 1..869 | 17..885 | 4345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:07:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10566-RB | 1462 | CG10566-RB | 79..947 | 17..885 | 4345 | 100 | Plus |
CG10566-RA | 1735 | CG10566-RA | 352..1220 | 17..885 | 4345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:07:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21131797..21132378 | 17..598 | 2910 | 100 | Plus |
3L | 28110227 | 3L | 21132446..21132687 | 597..838 | 1210 | 100 | Plus |
3L | 28110227 | 3L | 21132749..21132795 | 839..885 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:07:57 has no hits.
BO08304.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:43:28 Download gff for
BO08304.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10566-PA | 1..869 | 17..885 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:36:26 Download gff for
BO08304.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10566-PA | 1..869 | 17..885 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:11:36 Download gff for
BO08304.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10566-RA | 352..1220 | 17..885 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:27:37 Download gff for
BO08304.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10566-RA | 352..1220 | 17..885 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:27:37 Download gff for
BO08304.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21131797..21132378 | 17..598 | 100 | -> | Plus |
3L | 21132448..21132687 | 599..838 | 100 | -> | Plus |
3L | 21132749..21132795 | 839..885 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:11:36 Download gff for
BO08304.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21124897..21125478 | 17..598 | 100 | -> | Plus |
arm_3L | 21125548..21125787 | 599..838 | 100 | -> | Plus |
arm_3L | 21125849..21125895 | 839..885 | 100 | | Plus |
BO08304.complete Sequence
1267 bp (1267 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631143
> BO08304.complete
GAAGTTATCAGTCGACATGCTCAAGTCGGAGGTTCAGCACCAGTTCTGGA
TTACCAAAAAGGTGGTGCAGCGCAAGCTCGGAACGAAGGAGGACAAGCAC
ATAATATCCTCGGACGCGGAGCTGGATTCCAAGATCGAGGTGTTCAAATC
GATATCGGACACCAGCTTGAACCTGTGCAAAATCATTGACCAATACCAGG
AGCGCCTATGCATCCTGTCGCAGGAGGAGTGTGTGTTCGGCAGGTTCCTC
AAGGAGGCGGGAAAGCGGAGCAGAACCACGGGCGGTAGTATCGCCCACAC
GGCCAAGGCCGTATCCTTCGCTGGACAACAGAGGATGTGCGTGCGGGTGC
CGCTCCTGCGGCTCCAGCACGAAGTCGATGTGTTCCGCTGCCGGGCGATA
AAGGACACGGAGCAGACCCTCCAGACGATGGAGAAGGAGCGCACGGAATA
CCGCGCCGCTCTCTCCTGGATGAAGTCCGCCAGCCAGGAACTGGATCCCG
ATACGGGCAAGGGTCTGGACAAGTTTCGCACGGCACAGGCCCACGTGCGG
GTGGCCAAGCATAATTTCGATGGTTACTCAATGGATTCCATTCAGAAGAT
TGATTTACTAGCAGCTGCCCGATGCAACATGTACTCCCATGCTCTGGTGG
CCTACGTTACCGAGTTGAAGAACTTTGCCCAGAAGGCCGCCTCCACATTC
CAGACCATATCTAAGGCCTTGATTATAAAGCCCAAGTACGACTTCTGTGT
GCTAAAGGAACTGTCTCAAAATGAAGGATCCACAGAGGAAGTGCCGCCAA
TCGAAGCCGTGGATAAGGACCAGTCGTTATTCTTTGCTAACGAGTACCAG
GACAAGCTGGAAACCCAGCCGGAAATCAAGGAGTCCGAAGAGGACAAACC
AAGTGCACCTCCCAATGCCTGCGGCGACAATGAATCCTTGCTTATTGAGC
TTTCCAAGCAGCTGGAGGACAGTCCTCTAATAGATGCGCCGCTGGATGAA
GATATACCTGCCCAAAATAGCACTAACAAGCTATGGTCCCGCTTGTTTAG
CCAGCAGAATCAGCAACCCATACCGAGCCAAGTAGCCACGGACTCGAAGG
CAAGTGCAGGTGGCGCCACCCCGGTTCCCAGCAAATCGCAGACCACCAAC
AATCCCTGGCTGGATCTTTTCGCCGACTTGGATCCCTTAGCCAATCCGCA
AGCCTTCGATTTAAAACTGAGCGGCGGACGCAGTGTGGCCGAGCAGACCG
CAAGCTTTCTAGACCAT
BO08304.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:10:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10566-RB | 1236 | CG10566-PB | 1..1233 | 17..1249 | 6165 | 100 | Plus |
CG10566-RA | 1236 | CG10566-PA | 1..1233 | 17..1249 | 6165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:11:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10566-RB | 1462 | CG10566-RB | 79..1311 | 17..1249 | 6165 | 100 | Plus |
CG10566-RA | 1735 | CG10566-RA | 352..1584 | 17..1249 | 6165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:10:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21131797..21132378 | 17..598 | 2910 | 100 | Plus |
3L | 28110227 | 3L | 21132749..21133159 | 839..1249 | 2055 | 100 | Plus |
3L | 28110227 | 3L | 21132446..21132687 | 597..838 | 1210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:10:57 has no hits.
BO08304.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:36 Download gff for
BO08304.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10566-RA | 1..1236 | 17..1252 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:31:11 Download gff for
BO08304.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10566-RA | 352..1589 | 17..1255 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:47:02 Download gff for
BO08304.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10566-RA | 352..1584 | 17..1251 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:37 Download gff for
BO08304.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10566-RA | 352..1589 | 17..1255 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:53 Download gff for
BO08304.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10566-RA | 352..1584 | 17..1251 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:53 Download gff for
BO08304.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21131797..21132378 | 17..598 | 100 | -> | Plus |
3L | 21132448..21132687 | 599..838 | 100 | -> | Plus |
3L | 21132749..21133159 | 839..1251 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:47:02 Download gff for
BO08304.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21124897..21125478 | 17..598 | 100 | -> | Plus |
arm_3L | 21125548..21125787 | 599..838 | 100 | -> | Plus |
arm_3L | 21125849..21126259 | 839..1251 | 99 | | Plus |
BO08304.pep Sequence
Translation from 16 to 1267
> BO08304.pep
MLKSEVQHQFWITKKVVQRKLGTKEDKHIISSDAELDSKIEVFKSISDTS
LNLCKIIDQYQERLCILSQEECVFGRFLKEAGKRSRTTGGSIAHTAKAVS
FAGQQRMCVRVPLLRLQHEVDVFRCRAIKDTEQTLQTMEKERTEYRAALS
WMKSASQELDPDTGKGLDKFRTAQAHVRVAKHNFDGYSMDSIQKIDLLAA
ARCNMYSHALVAYVTELKNFAQKAASTFQTISKALIIKPKYDFCVLKELS
QNEGSTEEVPPIEAVDKDQSLFFANEYQDKLETQPEIKESEEDKPSAPPN
ACGDNESLLIELSKQLEDSPLIDAPLDEDIPAQNSTNKLWSRLFSQQNQQ
PIPSQVATDSKASAGGATPVPSKSQTTNNPWLDLFADLDPLANPQAFDLK
LSGGRSVAEQTASFLDH
BO08304.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:20:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10566-PB | 411 | CG10566-PB | 1..411 | 1..411 | 2105 | 100 | Plus |
CG10566-PA | 411 | CG10566-PA | 1..411 | 1..411 | 2105 | 100 | Plus |