Clone BO08304 Report

Search the DGRC for BO08304

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:83
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptCG10566-RA
Protein status:BO08304.pep: validated full length
Sequenced Size:1267

Clone Sequence Records

BO08304.3prime Sequence

947 bp (891 high quality bases) assembled on 2006-01-06

> BO08304.3prime
ATGGTCTAGAAAGCTTGCGGTCTGCTCGGCCACACTGCGTCCGCCGCTCA
GTTTTAAATCGAAGGCTTGCGGATTGGCTAAGGGATCCAAGTCGGCGAAA
AGATCCAGCCAGGGATTGTTGGTGGTCTGCGATTTGCTGGGAACCGGGGT
GGCGCCACCTGCACTTGCCTTCGAGTCCGTGGCTACTTGGCTCGGTATGG
GTTGCTGATTCTGCTGGCTAAACAAGCGGGACCATAGCTTGTTAGTGCTA
TTTTGGGCAGGTATATCTTCATCCAGCGGCGCATCTATTAGAGGACTGTC
CTCCAGCTGCTTGGAAAGCTCAATAAGCAAGGATTCATTGTCGCCGCAGG
CATTGGGAGGTGCACTTGGTTTGTCCTCTTCGGACTCCTTGATTTCCGGC
TGGGTTTCCAGCTTGTCCTGGTACTCGTTAGCAAAGAATAACGACTGGTC
CTTATCCACGGCTTCGATTGGCGGCACTTCCTCTGTGGATCCTTCATTTT
GAGACAGTTCCTTTAGCACACAGAAGTCGTACTTGGGCTTTATAATCAAG
GCCTTAGATATGGTCTGGAATGTGGAGGCGGCCTTCTGGGCAAAGTTCTT
CAACTCGGTAACGTAGGCCACCAGAGCATGGGAGTACATGTTGCATCGGG
CAGCTGCTAGTAAATCAATCTTCTGAATGGAATCCATTGAGTAACCATCG
AAATTATGCTTGGCCACCCGCACGTGGGCCTGTGCCGTGCGAAACTTGTC
CAGACCCTTGCCCGTATCGGGATCCAGTTCCTGGCTGGCGGACTTCATCC
AGGAGAGAGCGGCGCGGTATTCCGTGCGCTCCTTCTCCATCGTCTGGAGG
GTCTGCTCCGTGTCCTTTATCGCCCGGCAGCGGAACACATCGACTTCGTG
CTGGAGCCGCANGAGCGGCACCCGCACGCACATCCTCTGTTTGTCAG

BO08304.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG10566-PA 1236 CG10566-RA 311..1233 941..19 4596 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:57:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG10566-RB 1462 CG10566-RB 389..1311 941..19 4604 99.9 Minus
CG10566-RA 1735 CG10566-RA 662..1584 941..19 4604 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 14:57:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21132749..21133159 429..19 2055 100 Minus
3L 28110227 3L 21132107..21132378 941..670 1349 99.6 Minus
3L 28110227 3L 21132446..21132687 671..430 1210 100 Minus
Blast to na_te.dros performed on 2015-02-13 14:57:09 has no hits.

BO08304.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:43:27 Download gff for BO08304.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10566-PA 305..1236 16..947 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:36:25 Download gff for BO08304.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10566-PA 305..1236 16..947 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:14:42 Download gff for BO08304.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10566-RA 656..1589 13..947 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:41:37 Download gff for BO08304.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10566-RA 656..1589 13..947 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:41:37 Download gff for BO08304.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21132101..21132378 670..947 98 -> Minus
3L 21132448..21132687 430..669 100 -> Minus
3L 21132749..21133164 13..429 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:14:42 Download gff for BO08304.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21125201..21125478 670..947 98 -> Minus
arm_3L 21125548..21125787 430..669 100 -> Minus
arm_3L 21125849..21126264 13..429 99   Minus

BO08304.5prime Sequence

885 bp (858 high quality bases) assembled on 2006-01-06

> BO08304.5prime
GAAGTTATCAGTCGACATGCTCAAGTCGGAGGTTCAGCACCAGTTCTGGA
TTACCAAAAAGGTGGTGCAGCGCAAGCTCGGAACGAAGGAGGACAAGCAC
ATAATATCCTCGGACGCGGAGCTGGATTCCAAGATCGAGGTGTTCAAATC
GATATCGGACACCAGCTTGAACCTGTGCAAAATCATTGACCAATACCAGG
AGCGCCTATGCATCCTGTCGCAGGAGGAGTGTGTGTTCGGCAGGTTCCTC
AAGGAGGCGGGAAAGCGGAGCAGAACCACGGGCGGTAGTATCGCCCACAC
GGCCAAGGCCGTATCCTTCGCTGGACAACAGAGGATGTGCGTGCGGGTGC
CGCTCCTGCGGCTCCAGCACGAAGTCGATGTGTTCCGCTGCCGGGCGATA
AAGGACACGGAGCAGACCCTCCAGACGATGGAGAAGGAGCGCACGGAATA
CCGCGCCGCTCTCTCCTGGATGAAGTCCGCCAGCCAGGAACTGGATCCCG
ATACGGGCAAGGGTCTGGACAAGTTTCGCACGGCACAGGCCCACGTGCGG
GTGGCCAAGCATAATTTCGATGGTTACTCAATGGATTCCATTCAGAAGAT
TGATTTACTAGCAGCTGCCCGATGCAACATGTACTCCCATGCTCTGGTGG
CCTACGTTACCGAGTTGAAGAACTTTGCCCAGAAGGCCGCCTCCACATTC
CAGACCATATCTAAGGCCTTGATTATAAAGCCCAAGTACGACTTCTGTGT
GCTAAAGGAACTGTCTCAAAATGAAGGATCCACAGAGGAAGTGCCGCCAA
TCGAAGCCGTGGATAAGGACCAGTCGTTATTCTTTGCTAACGAGTACCAG
GACAAGCTGGAAACCCAGCCGGAAATCAAGGAGTC

BO08304.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG10566-PA 1236 CG10566-RA 1..869 17..885 4345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:07:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG10566-RB 1462 CG10566-RB 79..947 17..885 4345 100 Plus
CG10566-RA 1735 CG10566-RA 352..1220 17..885 4345 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21131797..21132378 17..598 2910 100 Plus
3L 28110227 3L 21132446..21132687 597..838 1210 100 Plus
3L 28110227 3L 21132749..21132795 839..885 235 100 Plus
Blast to na_te.dros performed on 2015-02-13 07:07:57 has no hits.

BO08304.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:43:28 Download gff for BO08304.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10566-PA 1..869 17..885 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:36:26 Download gff for BO08304.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10566-PA 1..869 17..885 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:11:36 Download gff for BO08304.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10566-RA 352..1220 17..885 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:27:37 Download gff for BO08304.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10566-RA 352..1220 17..885 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:27:37 Download gff for BO08304.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21131797..21132378 17..598 100 -> Plus
3L 21132448..21132687 599..838 100 -> Plus
3L 21132749..21132795 839..885 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:11:36 Download gff for BO08304.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21124897..21125478 17..598 100 -> Plus
arm_3L 21125548..21125787 599..838 100 -> Plus
arm_3L 21125849..21125895 839..885 100   Plus

BO08304.complete Sequence

1267 bp (1267 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ631143

> BO08304.complete
GAAGTTATCAGTCGACATGCTCAAGTCGGAGGTTCAGCACCAGTTCTGGA
TTACCAAAAAGGTGGTGCAGCGCAAGCTCGGAACGAAGGAGGACAAGCAC
ATAATATCCTCGGACGCGGAGCTGGATTCCAAGATCGAGGTGTTCAAATC
GATATCGGACACCAGCTTGAACCTGTGCAAAATCATTGACCAATACCAGG
AGCGCCTATGCATCCTGTCGCAGGAGGAGTGTGTGTTCGGCAGGTTCCTC
AAGGAGGCGGGAAAGCGGAGCAGAACCACGGGCGGTAGTATCGCCCACAC
GGCCAAGGCCGTATCCTTCGCTGGACAACAGAGGATGTGCGTGCGGGTGC
CGCTCCTGCGGCTCCAGCACGAAGTCGATGTGTTCCGCTGCCGGGCGATA
AAGGACACGGAGCAGACCCTCCAGACGATGGAGAAGGAGCGCACGGAATA
CCGCGCCGCTCTCTCCTGGATGAAGTCCGCCAGCCAGGAACTGGATCCCG
ATACGGGCAAGGGTCTGGACAAGTTTCGCACGGCACAGGCCCACGTGCGG
GTGGCCAAGCATAATTTCGATGGTTACTCAATGGATTCCATTCAGAAGAT
TGATTTACTAGCAGCTGCCCGATGCAACATGTACTCCCATGCTCTGGTGG
CCTACGTTACCGAGTTGAAGAACTTTGCCCAGAAGGCCGCCTCCACATTC
CAGACCATATCTAAGGCCTTGATTATAAAGCCCAAGTACGACTTCTGTGT
GCTAAAGGAACTGTCTCAAAATGAAGGATCCACAGAGGAAGTGCCGCCAA
TCGAAGCCGTGGATAAGGACCAGTCGTTATTCTTTGCTAACGAGTACCAG
GACAAGCTGGAAACCCAGCCGGAAATCAAGGAGTCCGAAGAGGACAAACC
AAGTGCACCTCCCAATGCCTGCGGCGACAATGAATCCTTGCTTATTGAGC
TTTCCAAGCAGCTGGAGGACAGTCCTCTAATAGATGCGCCGCTGGATGAA
GATATACCTGCCCAAAATAGCACTAACAAGCTATGGTCCCGCTTGTTTAG
CCAGCAGAATCAGCAACCCATACCGAGCCAAGTAGCCACGGACTCGAAGG
CAAGTGCAGGTGGCGCCACCCCGGTTCCCAGCAAATCGCAGACCACCAAC
AATCCCTGGCTGGATCTTTTCGCCGACTTGGATCCCTTAGCCAATCCGCA
AGCCTTCGATTTAAAACTGAGCGGCGGACGCAGTGTGGCCGAGCAGACCG
CAAGCTTTCTAGACCAT

BO08304.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:10:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG10566-RB 1236 CG10566-PB 1..1233 17..1249 6165 100 Plus
CG10566-RA 1236 CG10566-PA 1..1233 17..1249 6165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:11:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG10566-RB 1462 CG10566-RB 79..1311 17..1249 6165 100 Plus
CG10566-RA 1735 CG10566-RA 352..1584 17..1249 6165 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:10:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21131797..21132378 17..598 2910 100 Plus
3L 28110227 3L 21132749..21133159 839..1249 2055 100 Plus
3L 28110227 3L 21132446..21132687 597..838 1210 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:10:57 has no hits.

BO08304.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:36 Download gff for BO08304.complete
Subject Subject Range Query Range Percent Splice Strand
CG10566-RA 1..1236 17..1252 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:31:11 Download gff for BO08304.complete
Subject Subject Range Query Range Percent Splice Strand
CG10566-RA 352..1589 17..1255 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:47:02 Download gff for BO08304.complete
Subject Subject Range Query Range Percent Splice Strand
CG10566-RA 352..1584 17..1251 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:37 Download gff for BO08304.complete
Subject Subject Range Query Range Percent Splice Strand
CG10566-RA 352..1589 17..1255 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:53 Download gff for BO08304.complete
Subject Subject Range Query Range Percent Splice Strand
CG10566-RA 352..1584 17..1251 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:53 Download gff for BO08304.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21131797..21132378 17..598 100 -> Plus
3L 21132448..21132687 599..838 100 -> Plus
3L 21132749..21133159 839..1251 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:47:02 Download gff for BO08304.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21124897..21125478 17..598 100 -> Plus
arm_3L 21125548..21125787 599..838 100 -> Plus
arm_3L 21125849..21126259 839..1251 99   Plus

BO08304.pep Sequence

Translation from 16 to 1267

> BO08304.pep
MLKSEVQHQFWITKKVVQRKLGTKEDKHIISSDAELDSKIEVFKSISDTS
LNLCKIIDQYQERLCILSQEECVFGRFLKEAGKRSRTTGGSIAHTAKAVS
FAGQQRMCVRVPLLRLQHEVDVFRCRAIKDTEQTLQTMEKERTEYRAALS
WMKSASQELDPDTGKGLDKFRTAQAHVRVAKHNFDGYSMDSIQKIDLLAA
ARCNMYSHALVAYVTELKNFAQKAASTFQTISKALIIKPKYDFCVLKELS
QNEGSTEEVPPIEAVDKDQSLFFANEYQDKLETQPEIKESEEDKPSAPPN
ACGDNESLLIELSKQLEDSPLIDAPLDEDIPAQNSTNKLWSRLFSQQNQQ
PIPSQVATDSKASAGGATPVPSKSQTTNNPWLDLFADLDPLANPQAFDLK
LSGGRSVAEQTASFLDH

BO08304.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:20:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG10566-PB 411 CG10566-PB 1..411 1..411 2105 100 Plus
CG10566-PA 411 CG10566-PA 1..411 1..411 2105 100 Plus