Clone Sequence Records
BO08307.3prime Sequence
927 bp (888 high quality bases) assembled on 2006-01-06
> BO08307.3prime
ATGGTCTAGAAAGCTTGCGCTGCCAATGGCCTGGTAGACACTGCTACTAC
CCATCGACTTCTGGATGCCGAAGATCACGGCTATCAGAATGTAACACACA
AAGTAGAGAGCGGCGCTAATAAAGTTGAAAGCTCCGGGATAATTTTCCAA
AGTTGCCTTGTAGACGGTTGTGTACAGAGGTGCAGCGCCCAGTGGCGAAA
CCGATTCCATGGAGGTGGTCAGAGCAAAGATCTTGCCAACTTCAGTCGCG
GGTGCAACGTGCGAGAGAATCGCGCGGCACATAGGTCCCATGACGCCACG
CATCATACCCAGCGTCATGCCCAGATACAGCTCTTGCCAGTAGACTGCTG
TGGCTCGAACCGTGCTCTCCAGAACACAGCAAGCCAGGGAGAGCATTGCC
ATGGTTACGATAGACATCTTTAGAACGCGGCGCAATACCAACATGCCAAC
GATGCTGCCCACAATCTGGATCACGATGCGGGATGCGTTGAATAGACTGA
AGTCCTTAATGGTCCAGTTGAATTTATCCTGCACGAACATGTAATTTACA
GTGCTCTCTCCCTCCATGTCGAAAATGGCTATCGTAAGGGCAATCATTGT
AAGCCAGATGATTGTGCGATCAAAGTTGGGGCGCCTCTTAAAGCAGGTGC
GAATCAGGTCCGTGACCAAATCGAAACGGAAGAACTCACGGACTCGCGAT
CCGGTGTGAATGTCACCTGGATTTAGGCTTTCAGGTACAAACAGAAGCAC
GTACATCAAGGCAAACATCATCAGGCTACCAGCAATGGAAAACAACACCA
GAGCATTTGTGGCAGCATAGATATAACCGCTGGCCACATTGCCCACCATT
ATGCCAGCACAGAGGGAGGCTTCATTGAGGACCATTCTCAGAGCCTTCTT
TCGCTCCTTGGGCACATCGGATATGTA
BO08307.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30344-PA | 1524 | CG30344-RA | 613..1521 | 927..19 | 4520 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:57:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30344-RA | 2147 | CG30344-RA | 940..1848 | 927..19 | 4530 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:57:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9147549..9147877 | 564..236 | 1645 | 100 | Minus |
2R | 25286936 | 2R | 9147113..9147301 | 888..700 | 945 | 100 | Minus |
2R | 25286936 | 2R | 9147938..9148095 | 237..80 | 790 | 100 | Minus |
2R | 25286936 | 2R | 9147363..9147498 | 699..564 | 680 | 100 | Minus |
2R | 25286936 | 2R | 9148153..9148213 | 79..19 | 305 | 100 | Minus |
2R | 25286936 | 2R | 9147006..9147046 | 927..887 | 190 | 97.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 15:57:21 has no hits.
BO08307.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:43:31 Download gff for
BO08307.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30344-PA | 614..1524 | 15..926 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:36:32 Download gff for
BO08307.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30344-PA | 614..1524 | 15..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:10:47 Download gff for
BO08307.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30344-RA | 941..1851 | 15..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:29:36 Download gff for
BO08307.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30344-RA | 941..1851 | 15..926 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:29:36 Download gff for
BO08307.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9147939..9148095 | 80..236 | 100 | -> | Minus |
2R | 9148153..9148216 | 15..79 | 96 | | Minus |
2R | 9147007..9147046 | 887..926 | 97 | -> | Minus |
2R | 9147115..9147301 | 700..886 | 100 | -> | Minus |
2R | 9147363..9147498 | 564..699 | 100 | -> | Minus |
2R | 9147550..9147876 | 237..563 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:10:47 Download gff for
BO08307.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5035055..5035381 | 237..563 | 100 | -> | Minus |
arm_2R | 5034512..5034551 | 887..926 | 97 | -> | Minus |
arm_2R | 5034620..5034806 | 700..886 | 100 | -> | Minus |
arm_2R | 5034868..5035003 | 564..699 | 100 | -> | Minus |
arm_2R | 5035444..5035600 | 80..236 | 100 | -> | Minus |
arm_2R | 5035658..5035721 | 15..79 | 96 | | Minus |
BO08307.5prime Sequence
917 bp (822 high quality bases) assembled on 2006-01-06
> BO08307.5prime
GAAGTTATCAGTCGACATGCCTCGCTCTGATACGGAGGCTTTGGTGGCCG
ATGTGGAGACTGGCGAAGATTCGGCACCACGCATACTGGACGCATCATCT
GCGGCCAGCAGTGAGCAGGTGGACCCGCCTCCGGTACCGCCGCCTCATGA
CTACAGCAGCTATCGCTGGTTCATCCTGGAGCCCGCAGTTTTTTTAATCT
TCTTCGCCAGAAATTTAATTGGGGCGGTTTATCAGAACCAAATTCTCTAC
CAAACCTGCATCACCATCGAGAAATTCAATGCCACGCAATGTGAACCGCT
GCTGGGCATTGATCGCGGATCGGACGCGGATAAAGAAGTCGAGGTGATAG
TACAGACGTATTCTGCAAATATTATGATGACAACCTCTCTGCTAGAGAGC
ATTATTCCTGCCTTCGCGAGTCTGTTCCTGGGTCCCTGGTCCGACAAGTT
CGGAAGGCGGCCAATCCTGCTGACAACTTTTACGGGCTACCTCACTGGCG
CACTCATACTGATAGTAATCACTTACATAACGAGGTCCACGAATATAAGT
CCATGGTGGTTCCTCCTTTCCTCGGTTCCTTCCGTCGTAAGCGGCGGAAC
TTGCGCCTTGATTACTGGAATCTATTGCTACATATCCGATGTGGCCAAGG
AGCGAAAGAAGGCTCTGAGAATGGTCCTCAATGAAGCCTCCCTCTGTGCT
GGCATAATGGTGGGCAATGTGGCCAGCGGTTATATCTATGCTGCCACAAA
TGCTCTGGTGTTGTTTTCCATTGCTGGTAGCCTGATGATGTTTGCCTTGA
TGTACGTGCTTCTGTTTGTACCTGAAAGCCTAAATCCAGGTGACATTCAC
ACCGGATCGCGAGTCCGTGAGTTCTTCCGTTTCGATTTGGTCACGGACCT
GATTCGCACCTGCTTTA
BO08307.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30344-PA | 1524 | CG30344-RA | 1..901 | 17..917 | 4505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:41:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30344-RA | 2147 | CG30344-RA | 328..1228 | 17..917 | 4505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:41:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9145587..9145792 | 17..222 | 1030 | 100 | Plus |
2R | 25286936 | 2R | 9147113..9147301 | 668..856 | 945 | 100 | Plus |
2R | 25286936 | 2R | 9146862..9147046 | 485..669 | 925 | 100 | Plus |
2R | 25286936 | 2R | 9146646..9146797 | 335..486 | 760 | 100 | Plus |
2R | 25286936 | 2R | 9145859..9145973 | 221..335 | 575 | 100 | Plus |
2R | 25286936 | 2R | 9147363..9147423 | 857..917 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:41:49 has no hits.
BO08307.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:43:32 Download gff for
BO08307.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30344-PA | 1..900 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:36:33 Download gff for
BO08307.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30344-PA | 1..900 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:39:45 Download gff for
BO08307.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30344-RA | 324..1227 | 9..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:17:36 Download gff for
BO08307.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30344-RA | 324..1227 | 9..916 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:17:36 Download gff for
BO08307.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9145583..9145791 | 9..221 | 98 | -> | Plus |
2R | 9145860..9145972 | 222..334 | 100 | -> | Plus |
2R | 9146646..9146796 | 335..485 | 100 | -> | Plus |
2R | 9146863..9147046 | 486..669 | 100 | -> | Plus |
2R | 9147115..9147301 | 670..856 | 100 | -> | Plus |
2R | 9147363..9147422 | 857..916 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:39:45 Download gff for
BO08307.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5033365..5033477 | 222..334 | 100 | -> | Plus |
arm_2R | 5034151..5034301 | 335..485 | 100 | -> | Plus |
arm_2R | 5033088..5033296 | 9..221 | 98 | -> | Plus |
arm_2R | 5034368..5034551 | 486..669 | 100 | -> | Plus |
arm_2R | 5034620..5034806 | 670..856 | 100 | -> | Plus |
arm_2R | 5034868..5034927 | 857..916 | 100 | | Plus |
BO08307.complete Sequence
1555 bp (1555 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631144
> BO08307.complete
GAAGTTATCAGTCGACATGCCTCGCTCTGATACGGAGGCTTTGGTGGCCG
ATGTGGAGACTGGCGAAGATTCGGCACCACGCATACTGGACGCATCATCT
GCGGCCAGCAGTGAGCAGGTGGACCCGCCTCCGGTACCGCCGCCTCATGA
CTACAGCAGCTATCGCTGGTTCATCCTGGAGCCCGCAGTTTTTTTAATCT
TCTTCGCCAGAAATTTAATTGGGGCGGTTTATCAGAACCAAATTCTCTAC
CAAACCTGCATCACCATCGAGAAATTCAATGCCACGCAATGTGAACCGCT
GCTGGGCATTGATCGCGGATCGGACGCGGATAAAGAAGTCGAGGTGATAG
TACAGACGTATTCTGCAAATATTATGATGACAACCTCTCTGCTAGAGAGC
ATTATTCCTGCCTTCGCGAGTCTGTTCCTGGGTCCCTGGTCCGACAAGTT
CGGAAGGCGGCCAATCCTGCTGACAACTTTTACGGGCTACCTCACTGGCG
CACTCATACTGATAGTAATCACTTACATAACGAGGTCCACGAATATAAGT
CCATGGTGGTTCCTCCTTTCCTCGGTTCCTTCCGTCGTAAGCGGCGGAAC
TTGCGCCTTGATTACTGGAATCTATTGCTACATATCCGATGTGGCCAAGG
AGCGAAAGAAGGCTCTGAGAATGGTCCTCAATGAAGCCTCCCTCTGTGCT
GGCATAATGGTGGGCAATGTGGCCAGCGGTTATATCTATGCTGCCACAAA
TGCTCTGGTGTTGTTTTCCATTGCTGGTAGCCTGATGATGTTTGCCTTGA
TGTACGTGCTTCTGTTTGTACCTGAAAGCCTAAATCCAGGTGACATTCAC
ACCGGATCGCGAGTCCGTGAGTTCTTCCGTTTCGATTTGGTCACGGACCT
GATTCGCACCTGCTTTAAGAGGCGCCCCAACTTTGATCGCACAATCATCT
GGCTTACAATGATTGCCCTTACGATAGCCATTTTCGACATGGAGGGAGAG
AGCACTGTAAATTACATGTTCGTGCAGGATAAATTCAACTGGACCATTAA
GGACTTCAGTCTATTCAACGCATCCCGCATCGTGATCCAGATTGTGGGCA
GCATCGTTGGCATGTTGGTATTGCGCCGCGTTCTAAAGATGTCTATCGTA
ACCATGGCAATGCTCTCCCTGGCTTGCTGTGTTCTGGAGAGCACGGTTCG
AGCCACAGCAGTCTACTGGCAAGAGCTGTATCTGGGCATGACGCTGGGTA
TGATGCGTGGCGTCATGGGACCTATGTGCCGCGCGATTCTCTCGCACGTT
GCACCCGCGACTGAAGTTGGCAAGATCTTTGCTCTGACCACCTCCATGGA
ATCGGTTTCGCCACTGGGCGCTGCACCTCTGTACACAACCGTCTACAAGG
CAACTTTGGAAAATTATCCCGGAGCTTTCAACTTTATTAGCGCCGCTCTC
TACTTTGTGTGTTACATTCTGATAGCCGTGATCTTCGGCATCCAGAAGTC
GATGGGTAGTAGCAGTGTCTACCAGGCCATTGGCAGCGCAAGCTTTCTAG
ACCAT
BO08307.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:34:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30344-RA | 1524 | CG30344-PA | 1..1521 | 17..1537 | 7605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:34:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30344-RA | 2147 | CG30344-RA | 328..1848 | 17..1537 | 7605 | 100 | Plus |
CG30345-RB | 2217 | CG30345-RB | 466..764 | 377..675 | 250 | 72.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:34:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9147549..9147877 | 992..1320 | 1645 | 100 | Plus |
2R | 25286936 | 2R | 9145587..9145792 | 17..222 | 1030 | 100 | Plus |
2R | 25286936 | 2R | 9147113..9147301 | 668..856 | 945 | 100 | Plus |
2R | 25286936 | 2R | 9146862..9147046 | 485..669 | 925 | 100 | Plus |
2R | 25286936 | 2R | 9147938..9148095 | 1319..1476 | 790 | 100 | Plus |
2R | 25286936 | 2R | 9146646..9146797 | 335..486 | 760 | 100 | Plus |
2R | 25286936 | 2R | 9147363..9147498 | 857..992 | 680 | 100 | Plus |
2R | 25286936 | 2R | 9145859..9145973 | 221..335 | 575 | 100 | Plus |
2R | 25286936 | 2R | 9148153..9148213 | 1477..1537 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:34:39 has no hits.
BO08307.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:38 Download gff for
BO08307.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30344-RA | 1..1524 | 17..1541 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:31:12 Download gff for
BO08307.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30344-RA | 335..1862 | 9..1541 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:13 Download gff for
BO08307.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30344-RA | 328..1848 | 17..1539 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:38 Download gff for
BO08307.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30344-RA | 335..1862 | 9..1541 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:18 Download gff for
BO08307.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30344-RA | 328..1848 | 17..1539 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:18 Download gff for
BO08307.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9145860..9145972 | 222..334 | 100 | -> | Plus |
2R | 9146646..9146796 | 335..485 | 100 | -> | Plus |
2R | 9147550..9147876 | 993..1319 | 100 | -> | Plus |
2R | 9146863..9147046 | 486..669 | 100 | -> | Plus |
2R | 9147115..9147301 | 670..856 | 100 | -> | Plus |
2R | 9147939..9148095 | 1320..1476 | 100 | -> | Plus |
2R | 9148153..9148213 | 1477..1539 | 96 | | Plus |
2R | 9147363..9147498 | 857..992 | 100 | -> | Plus |
2R | 9145587..9145791 | 17..221 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:13 Download gff for
BO08307.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5035055..5035381 | 993..1319 | 100 | -> | Plus |
arm_2R | 5033092..5033296 | 17..221 | 100 | -> | Plus |
arm_2R | 5033365..5033477 | 222..334 | 100 | -> | Plus |
arm_2R | 5034151..5034301 | 335..485 | 100 | -> | Plus |
arm_2R | 5034368..5034551 | 486..669 | 100 | -> | Plus |
arm_2R | 5034620..5034806 | 670..856 | 100 | -> | Plus |
arm_2R | 5034868..5035003 | 857..992 | 100 | -> | Plus |
arm_2R | 5035444..5035600 | 1320..1476 | 100 | -> | Plus |
arm_2R | 5035658..5035718 | 1477..1539 | 96 | | Plus |
BO08307.pep Sequence
Translation from 16 to 1555
> BO08307.pep
MPRSDTEALVADVETGEDSAPRILDASSAASSEQVDPPPVPPPHDYSSYR
WFILEPAVFLIFFARNLIGAVYQNQILYQTCITIEKFNATQCEPLLGIDR
GSDADKEVEVIVQTYSANIMMTTSLLESIIPAFASLFLGPWSDKFGRRPI
LLTTFTGYLTGALILIVITYITRSTNISPWWFLLSSVPSVVSGGTCALIT
GIYCYISDVAKERKKALRMVLNEASLCAGIMVGNVASGYIYAATNALVLF
SIAGSLMMFALMYVLLFVPESLNPGDIHTGSRVREFFRFDLVTDLIRTCF
KRRPNFDRTIIWLTMIALTIAIFDMEGESTVNYMFVQDKFNWTIKDFSLF
NASRIVIQIVGSIVGMLVLRRVLKMSIVTMAMLSLACCVLESTVRATAVY
WQELYLGMTLGMMRGVMGPMCRAILSHVAPATEVGKIFALTTSMESVSPL
GAAPLYTTVYKATLENYPGAFNFISAALYFVCYILIAVIFGIQKSMGSSS
VYQAIGSASFLDH
BO08307.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:20:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30344-PA | 507 | CG30344-PA | 1..507 | 1..507 | 2579 | 100 | Plus |
CG30345-PB | 496 | CG30345-PB | 1..496 | 1..507 | 1638 | 61.1 | Plus |
CG15553-PC | 521 | CG15553-PC | 18..509 | 49..493 | 808 | 32.5 | Plus |
CG8046-PA | 519 | CG8046-PA | 9..504 | 7..490 | 699 | 31.6 | Plus |
CG8046-PB | 388 | CG8046-PB | 3..373 | 125..490 | 584 | 32.9 | Plus |