Clone BO08307 Report

Search the DGRC for BO08307

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:83
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptCG30344-RA
Protein status:BO08307.pep: validated full length
Sequenced Size:1555

Clone Sequence Records

BO08307.3prime Sequence

927 bp (888 high quality bases) assembled on 2006-01-06

> BO08307.3prime
ATGGTCTAGAAAGCTTGCGCTGCCAATGGCCTGGTAGACACTGCTACTAC
CCATCGACTTCTGGATGCCGAAGATCACGGCTATCAGAATGTAACACACA
AAGTAGAGAGCGGCGCTAATAAAGTTGAAAGCTCCGGGATAATTTTCCAA
AGTTGCCTTGTAGACGGTTGTGTACAGAGGTGCAGCGCCCAGTGGCGAAA
CCGATTCCATGGAGGTGGTCAGAGCAAAGATCTTGCCAACTTCAGTCGCG
GGTGCAACGTGCGAGAGAATCGCGCGGCACATAGGTCCCATGACGCCACG
CATCATACCCAGCGTCATGCCCAGATACAGCTCTTGCCAGTAGACTGCTG
TGGCTCGAACCGTGCTCTCCAGAACACAGCAAGCCAGGGAGAGCATTGCC
ATGGTTACGATAGACATCTTTAGAACGCGGCGCAATACCAACATGCCAAC
GATGCTGCCCACAATCTGGATCACGATGCGGGATGCGTTGAATAGACTGA
AGTCCTTAATGGTCCAGTTGAATTTATCCTGCACGAACATGTAATTTACA
GTGCTCTCTCCCTCCATGTCGAAAATGGCTATCGTAAGGGCAATCATTGT
AAGCCAGATGATTGTGCGATCAAAGTTGGGGCGCCTCTTAAAGCAGGTGC
GAATCAGGTCCGTGACCAAATCGAAACGGAAGAACTCACGGACTCGCGAT
CCGGTGTGAATGTCACCTGGATTTAGGCTTTCAGGTACAAACAGAAGCAC
GTACATCAAGGCAAACATCATCAGGCTACCAGCAATGGAAAACAACACCA
GAGCATTTGTGGCAGCATAGATATAACCGCTGGCCACATTGCCCACCATT
ATGCCAGCACAGAGGGAGGCTTCATTGAGGACCATTCTCAGAGCCTTCTT
TCGCTCCTTGGGCACATCGGATATGTA

BO08307.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG30344-PA 1524 CG30344-RA 613..1521 927..19 4520 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:57:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG30344-RA 2147 CG30344-RA 940..1848 927..19 4530 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9147549..9147877 564..236 1645 100 Minus
2R 25286936 2R 9147113..9147301 888..700 945 100 Minus
2R 25286936 2R 9147938..9148095 237..80 790 100 Minus
2R 25286936 2R 9147363..9147498 699..564 680 100 Minus
2R 25286936 2R 9148153..9148213 79..19 305 100 Minus
2R 25286936 2R 9147006..9147046 927..887 190 97.6 Minus
Blast to na_te.dros performed on 2015-02-12 15:57:21 has no hits.

BO08307.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:43:31 Download gff for BO08307.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30344-PA 614..1524 15..926 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:36:32 Download gff for BO08307.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30344-PA 614..1524 15..926 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:10:47 Download gff for BO08307.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30344-RA 941..1851 15..926 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:29:36 Download gff for BO08307.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30344-RA 941..1851 15..926 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:29:36 Download gff for BO08307.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9147939..9148095 80..236 100 -> Minus
2R 9148153..9148216 15..79 96   Minus
2R 9147007..9147046 887..926 97 -> Minus
2R 9147115..9147301 700..886 100 -> Minus
2R 9147363..9147498 564..699 100 -> Minus
2R 9147550..9147876 237..563 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:10:47 Download gff for BO08307.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5035055..5035381 237..563 100 -> Minus
arm_2R 5034512..5034551 887..926 97 -> Minus
arm_2R 5034620..5034806 700..886 100 -> Minus
arm_2R 5034868..5035003 564..699 100 -> Minus
arm_2R 5035444..5035600 80..236 100 -> Minus
arm_2R 5035658..5035721 15..79 96   Minus

BO08307.5prime Sequence

917 bp (822 high quality bases) assembled on 2006-01-06

> BO08307.5prime
GAAGTTATCAGTCGACATGCCTCGCTCTGATACGGAGGCTTTGGTGGCCG
ATGTGGAGACTGGCGAAGATTCGGCACCACGCATACTGGACGCATCATCT
GCGGCCAGCAGTGAGCAGGTGGACCCGCCTCCGGTACCGCCGCCTCATGA
CTACAGCAGCTATCGCTGGTTCATCCTGGAGCCCGCAGTTTTTTTAATCT
TCTTCGCCAGAAATTTAATTGGGGCGGTTTATCAGAACCAAATTCTCTAC
CAAACCTGCATCACCATCGAGAAATTCAATGCCACGCAATGTGAACCGCT
GCTGGGCATTGATCGCGGATCGGACGCGGATAAAGAAGTCGAGGTGATAG
TACAGACGTATTCTGCAAATATTATGATGACAACCTCTCTGCTAGAGAGC
ATTATTCCTGCCTTCGCGAGTCTGTTCCTGGGTCCCTGGTCCGACAAGTT
CGGAAGGCGGCCAATCCTGCTGACAACTTTTACGGGCTACCTCACTGGCG
CACTCATACTGATAGTAATCACTTACATAACGAGGTCCACGAATATAAGT
CCATGGTGGTTCCTCCTTTCCTCGGTTCCTTCCGTCGTAAGCGGCGGAAC
TTGCGCCTTGATTACTGGAATCTATTGCTACATATCCGATGTGGCCAAGG
AGCGAAAGAAGGCTCTGAGAATGGTCCTCAATGAAGCCTCCCTCTGTGCT
GGCATAATGGTGGGCAATGTGGCCAGCGGTTATATCTATGCTGCCACAAA
TGCTCTGGTGTTGTTTTCCATTGCTGGTAGCCTGATGATGTTTGCCTTGA
TGTACGTGCTTCTGTTTGTACCTGAAAGCCTAAATCCAGGTGACATTCAC
ACCGGATCGCGAGTCCGTGAGTTCTTCCGTTTCGATTTGGTCACGGACCT
GATTCGCACCTGCTTTA

BO08307.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG30344-PA 1524 CG30344-RA 1..901 17..917 4505 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:41:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG30344-RA 2147 CG30344-RA 328..1228 17..917 4505 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:41:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9145587..9145792 17..222 1030 100 Plus
2R 25286936 2R 9147113..9147301 668..856 945 100 Plus
2R 25286936 2R 9146862..9147046 485..669 925 100 Plus
2R 25286936 2R 9146646..9146797 335..486 760 100 Plus
2R 25286936 2R 9145859..9145973 221..335 575 100 Plus
2R 25286936 2R 9147363..9147423 857..917 305 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:41:49 has no hits.

BO08307.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:43:32 Download gff for BO08307.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30344-PA 1..900 17..916 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:36:33 Download gff for BO08307.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30344-PA 1..900 17..916 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:39:45 Download gff for BO08307.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30344-RA 324..1227 9..916 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:17:36 Download gff for BO08307.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30344-RA 324..1227 9..916 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:17:36 Download gff for BO08307.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9145583..9145791 9..221 98 -> Plus
2R 9145860..9145972 222..334 100 -> Plus
2R 9146646..9146796 335..485 100 -> Plus
2R 9146863..9147046 486..669 100 -> Plus
2R 9147115..9147301 670..856 100 -> Plus
2R 9147363..9147422 857..916 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:39:45 Download gff for BO08307.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5033365..5033477 222..334 100 -> Plus
arm_2R 5034151..5034301 335..485 100 -> Plus
arm_2R 5033088..5033296 9..221 98 -> Plus
arm_2R 5034368..5034551 486..669 100 -> Plus
arm_2R 5034620..5034806 670..856 100 -> Plus
arm_2R 5034868..5034927 857..916 100   Plus

BO08307.complete Sequence

1555 bp (1555 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ631144

> BO08307.complete
GAAGTTATCAGTCGACATGCCTCGCTCTGATACGGAGGCTTTGGTGGCCG
ATGTGGAGACTGGCGAAGATTCGGCACCACGCATACTGGACGCATCATCT
GCGGCCAGCAGTGAGCAGGTGGACCCGCCTCCGGTACCGCCGCCTCATGA
CTACAGCAGCTATCGCTGGTTCATCCTGGAGCCCGCAGTTTTTTTAATCT
TCTTCGCCAGAAATTTAATTGGGGCGGTTTATCAGAACCAAATTCTCTAC
CAAACCTGCATCACCATCGAGAAATTCAATGCCACGCAATGTGAACCGCT
GCTGGGCATTGATCGCGGATCGGACGCGGATAAAGAAGTCGAGGTGATAG
TACAGACGTATTCTGCAAATATTATGATGACAACCTCTCTGCTAGAGAGC
ATTATTCCTGCCTTCGCGAGTCTGTTCCTGGGTCCCTGGTCCGACAAGTT
CGGAAGGCGGCCAATCCTGCTGACAACTTTTACGGGCTACCTCACTGGCG
CACTCATACTGATAGTAATCACTTACATAACGAGGTCCACGAATATAAGT
CCATGGTGGTTCCTCCTTTCCTCGGTTCCTTCCGTCGTAAGCGGCGGAAC
TTGCGCCTTGATTACTGGAATCTATTGCTACATATCCGATGTGGCCAAGG
AGCGAAAGAAGGCTCTGAGAATGGTCCTCAATGAAGCCTCCCTCTGTGCT
GGCATAATGGTGGGCAATGTGGCCAGCGGTTATATCTATGCTGCCACAAA
TGCTCTGGTGTTGTTTTCCATTGCTGGTAGCCTGATGATGTTTGCCTTGA
TGTACGTGCTTCTGTTTGTACCTGAAAGCCTAAATCCAGGTGACATTCAC
ACCGGATCGCGAGTCCGTGAGTTCTTCCGTTTCGATTTGGTCACGGACCT
GATTCGCACCTGCTTTAAGAGGCGCCCCAACTTTGATCGCACAATCATCT
GGCTTACAATGATTGCCCTTACGATAGCCATTTTCGACATGGAGGGAGAG
AGCACTGTAAATTACATGTTCGTGCAGGATAAATTCAACTGGACCATTAA
GGACTTCAGTCTATTCAACGCATCCCGCATCGTGATCCAGATTGTGGGCA
GCATCGTTGGCATGTTGGTATTGCGCCGCGTTCTAAAGATGTCTATCGTA
ACCATGGCAATGCTCTCCCTGGCTTGCTGTGTTCTGGAGAGCACGGTTCG
AGCCACAGCAGTCTACTGGCAAGAGCTGTATCTGGGCATGACGCTGGGTA
TGATGCGTGGCGTCATGGGACCTATGTGCCGCGCGATTCTCTCGCACGTT
GCACCCGCGACTGAAGTTGGCAAGATCTTTGCTCTGACCACCTCCATGGA
ATCGGTTTCGCCACTGGGCGCTGCACCTCTGTACACAACCGTCTACAAGG
CAACTTTGGAAAATTATCCCGGAGCTTTCAACTTTATTAGCGCCGCTCTC
TACTTTGTGTGTTACATTCTGATAGCCGTGATCTTCGGCATCCAGAAGTC
GATGGGTAGTAGCAGTGTCTACCAGGCCATTGGCAGCGCAAGCTTTCTAG
ACCAT

BO08307.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG30344-RA 1524 CG30344-PA 1..1521 17..1537 7605 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:34:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG30344-RA 2147 CG30344-RA 328..1848 17..1537 7605 100 Plus
CG30345-RB 2217 CG30345-RB 466..764 377..675 250 72.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9147549..9147877 992..1320 1645 100 Plus
2R 25286936 2R 9145587..9145792 17..222 1030 100 Plus
2R 25286936 2R 9147113..9147301 668..856 945 100 Plus
2R 25286936 2R 9146862..9147046 485..669 925 100 Plus
2R 25286936 2R 9147938..9148095 1319..1476 790 100 Plus
2R 25286936 2R 9146646..9146797 335..486 760 100 Plus
2R 25286936 2R 9147363..9147498 857..992 680 100 Plus
2R 25286936 2R 9145859..9145973 221..335 575 100 Plus
2R 25286936 2R 9148153..9148213 1477..1537 305 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:34:39 has no hits.

BO08307.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:38 Download gff for BO08307.complete
Subject Subject Range Query Range Percent Splice Strand
CG30344-RA 1..1524 17..1541 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:31:12 Download gff for BO08307.complete
Subject Subject Range Query Range Percent Splice Strand
CG30344-RA 335..1862 9..1541 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:13 Download gff for BO08307.complete
Subject Subject Range Query Range Percent Splice Strand
CG30344-RA 328..1848 17..1539 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:38 Download gff for BO08307.complete
Subject Subject Range Query Range Percent Splice Strand
CG30344-RA 335..1862 9..1541 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:18 Download gff for BO08307.complete
Subject Subject Range Query Range Percent Splice Strand
CG30344-RA 328..1848 17..1539 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:18 Download gff for BO08307.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9145860..9145972 222..334 100 -> Plus
2R 9146646..9146796 335..485 100 -> Plus
2R 9147550..9147876 993..1319 100 -> Plus
2R 9146863..9147046 486..669 100 -> Plus
2R 9147115..9147301 670..856 100 -> Plus
2R 9147939..9148095 1320..1476 100 -> Plus
2R 9148153..9148213 1477..1539 96   Plus
2R 9147363..9147498 857..992 100 -> Plus
2R 9145587..9145791 17..221 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:13 Download gff for BO08307.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5035055..5035381 993..1319 100 -> Plus
arm_2R 5033092..5033296 17..221 100 -> Plus
arm_2R 5033365..5033477 222..334 100 -> Plus
arm_2R 5034151..5034301 335..485 100 -> Plus
arm_2R 5034368..5034551 486..669 100 -> Plus
arm_2R 5034620..5034806 670..856 100 -> Plus
arm_2R 5034868..5035003 857..992 100 -> Plus
arm_2R 5035444..5035600 1320..1476 100 -> Plus
arm_2R 5035658..5035718 1477..1539 96   Plus

BO08307.pep Sequence

Translation from 16 to 1555

> BO08307.pep
MPRSDTEALVADVETGEDSAPRILDASSAASSEQVDPPPVPPPHDYSSYR
WFILEPAVFLIFFARNLIGAVYQNQILYQTCITIEKFNATQCEPLLGIDR
GSDADKEVEVIVQTYSANIMMTTSLLESIIPAFASLFLGPWSDKFGRRPI
LLTTFTGYLTGALILIVITYITRSTNISPWWFLLSSVPSVVSGGTCALIT
GIYCYISDVAKERKKALRMVLNEASLCAGIMVGNVASGYIYAATNALVLF
SIAGSLMMFALMYVLLFVPESLNPGDIHTGSRVREFFRFDLVTDLIRTCF
KRRPNFDRTIIWLTMIALTIAIFDMEGESTVNYMFVQDKFNWTIKDFSLF
NASRIVIQIVGSIVGMLVLRRVLKMSIVTMAMLSLACCVLESTVRATAVY
WQELYLGMTLGMMRGVMGPMCRAILSHVAPATEVGKIFALTTSMESVSPL
GAAPLYTTVYKATLENYPGAFNFISAALYFVCYILIAVIFGIQKSMGSSS
VYQAIGSASFLDH

BO08307.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:20:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG30344-PA 507 CG30344-PA 1..507 1..507 2579 100 Plus
CG30345-PB 496 CG30345-PB 1..496 1..507 1638 61.1 Plus
CG15553-PC 521 CG15553-PC 18..509 49..493 808 32.5 Plus
CG8046-PA 519 CG8046-PA 9..504 7..490 699 31.6 Plus
CG8046-PB 388 CG8046-PB 3..373 125..490 584 32.9 Plus